ClCG01G013075 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G013075
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPhotosystem II protein D1
LocationCG_Chr01: 26186696 .. 26189838 (+)
RNA-Seq ExpressionClCG01G013075
SyntenyClCG01G013075
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACGTCGTTTTATCCTGCCCGCGTTTTCCTCTCACCGACCACTTTTCTACTTCTTCCTCTCTCCTTTTTCTTTTTGTCTTTTTTTTTTTTTTTATCCGATTATCCAATCCCGACTTTAGTTTTTTTTTTTTTTCTTCCTATTTTTAAATTGCTTATTTTATTCTTTCTTACTCTTGATTTTAGTTCCTTTTAGTATATATACTTTTAAAAAGTGACCGTTTTGGATCATTTCACTCTATTTTTGTTTAAACTTTAAGGAGACGTTTGAGGCTAAGTTGGTTATTATAGTTTATGGGGTATAATAATCAATATGTTTGAGATGTAGACTATTTTAGTATAGGTAAGAAATGATAAACACAGTAATAAATTAAAAAAAAAGAGAGAGAGAATGAGTGAAAAATAGTAAATAAATAGAAAAGAAGGGTTTTGAAATAGTATTTATTATACTTAATTGTAGGTTACAAAATAGTTGTTAAAATGAACCAAAATCGAAATTATACAATGACCAAAATGAACCAAAAATAAAGTACAATAACCTTAATGTACCAATATTGGAAAGCATAAATACCAAAAATAACATTTTGAAAGTCTTAAAACTAAAATGAATCAAAGTCGAAATTACAACAATCAAAATAGAAATTCTAAAAGTATATGAACCAAAATTAAAGTAAAATCACCGAAATGAACATTTTGAAAGAACAAGAATCAAAATGAACCAAAAGTAGAATGTACGTGCATTTGTCCTGCGGATAATCCTCGATTAGAGGGAGGGAGCAAGGAGAATTTTCTCCCCTTTGGCTAAATGGGGATGGGGACGGGGATTATATTCCCCATCCCCGACTCCAAACATGCCCGCCCCACCTTATTTAATTTTTTAAATATATATTTATTTATTTATTTAAAAAGAATTAAAAACTTCATACCATTCATCTTTTTCTTCTGAGTGTGTTAAAATTAAAAAAACTTAAAATATTAAACTCAATTTACCTGCTCTTTGTGAATTTAAAAACGTTCGATTTAGTTCTCTTTTTTGTTTAGGTTTAGTTTGATTTTTGGTATATCTTAGGTTTGAGATTAGGTAGTTTGATTTTTATAATTTTATAAATCTTAATTTATGCGATTTTGAAAGGTCTCTACATGATTGGAGAATTTCAATTTAATTTATAATATAGTTCAGTCAAATTTCATAAATAGTTTTTAAAGCTACTATATTCACGCGTTGTGTTTTTAACTTAGACAGAAATTGGATTTCTTAAATTAGATAATTGTCTCAATTTGTTGTGTTAAATATTTGAGGTTCAAATTACAAATTGGGATTATTTTTAAAAACTAATGTTATTTTAATATTTATTGATAAAAATGGAGTTAAGGGGAAACTATTGACAATTTTGGGATAGTAAAATTGTGGATGGGATCCACAAGTATGGATAATCAAGGACTGGGTCCACGATTTAGGGCATTATTGTGGATTAGGTCCACAATTTAGGGCATTATTGTGGATTAGGTCCACAATTAAGATGCCACGCGATTGCCGAAGTAGGAATTTCTCTACTAACTTCCCGAACCAGATGACGAGACTGCCACATGTTGAGTTGACTAGCAAATTGTGGACGGAGTCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTTCCCTCTCCCAGCCAATCGCCGCCCACCGTCTACTGAACGCCGTCATCTTCTCCCTGTCATCCACCTATGGCATATGTATATACATTTTTTCCAATCATATGATAAATATCTATAGATCTAATGTTTTATTTTGTATGGATGAATGGGCTTGTAGTTCTAGAGTTTGTTTTTACCAAACAATTTGTTTTGTTTAAAATTTGGAGGATCTAGCTTGTTTTTTTACCATTAGTTTGAGTTTGAGTTTTTTTATCGTTAGTTTGGACTTCAAATTTTATTTTTGAATTGTTTGAGTGTTTGGACTTGAAAGTTTTTATTGTTGTTTGGACTGATGATGGATTGGGTTGTAGGGTTTTTTTTTTTTTTTTTGAAAATTTGGACTCATCTCTAAAACGTAGTAACTTAGACTAATGTTTTTGGACTAATAGATTTAACATTGTAGCATCACAAGTCCAATTACAACCTTTAGATCACATTATGGGATATCCACTCAATGTCAGGTATTACTTTTTGTATATATTCATTCTCTTGTCAATTTAAGTAATAAAATATTTTAATTGTTTTATATTCATGTGTTAGATGAAGCGGTGGCTTAGCTATATCTCAACAATCAGCAAACATGTTGCTGGTATATCGACTATTATTTGATCAATTGATGCAGAATTAGGTAATAATATATTTATTGCATATACAAATGAATATTACATATTATTTTGGTTCCTAATATTAGTGTATGAGATTTCAGATCAATTGGGCGACATACACACCACATATTATGTCGTTATTGTCTGATTATTGTTAGCCCACTTATATGCTTTTATATCGTAGAGTGGCATCAGCTACATCGGGTGTTGAGACAGTTTGATCTTCGACAAACGGTACCAACGTTGTGTTGTACACTCCTGCAACTACACCAGATTTATTTAAGAGGTAAACATGTCCAAAACTAGCGTCAAATTCATGCAAAATATATGTCCTTGTGGCATGCCCGTCATGATCGTTGTCATAAAGAGAAACTTCTAGTTTATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

mRNA sequence

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

Coding sequence (CDS)

ATGACTTGTACGGGCAGGTTGGATTCCATGCAACAGTCTCACTTACCAGTTGGCCATTTTGACTTTCCGACATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAG

Protein sequence

MTCTGRLDSMQQSHLPVGHFDFPTFGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSGSPL
Homology
[Close]
BLAST of ClCG01G013075 vs. NCBI nr
Match: VDD65979.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISS 62
           FGQEEET +IVAAHGYFGRLIFQYA+ + +   YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275

[Close]
BLAST of ClCG01G013075 vs. NCBI nr
Match: KAG5122340.1 (hypothetical protein JHK84_040680 [Glycine max])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELL 65
           FGQEEET +IVAAHGYFGRLIFQYA+ S + I+ +SS  L
Sbjct: 71  FGQEEETYNIVAAHGYFGRLIFQYASSSHSHIIPLSSSNL 110

[Close]
BLAST of ClCG01G013075 vs. NCBI nr
Match: ADG03116.1 (photosystem II protein D1, partial [uncultured eukaryote])

HSP 1 Score: 54.3 bits (129), Expect = 5.2e-04
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+
Sbjct: 146 FGQEEETYNIVAAHGYFGRLIFQYASFNNSLALH 179

[Close]
BLAST of ClCG01G013075 vs. NCBI nr
Match: QGR10201.1 (photosystem II D1 protein, partial [Hapalidiales sp. YA_Twist-2019])

HSP 1 Score: 54.3 bits (129), Expect = 5.2e-04
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSG 72
           FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+     LGL  V G
Sbjct: 213 FGQEEETYNIVAAHGYFGRLIFQYASFNNSLALHF---FLGLWPVVG 256

[Close]
BLAST of ClCG01G013075 vs. NCBI nr
Match: ACF23897.1 (photosystem II protein D1, partial [uncultured bacterium])

HSP 1 Score: 53.9 bits (128), Expect = 6.8e-04
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + + IL+
Sbjct: 146 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRILH 179

[Close]
BLAST of ClCG01G013075 vs. ExPASy Swiss-Prot
Match: A5A8K9 (Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=psbA2 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-06
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ S +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFSNSRSLH 272

[Close]
BLAST of ClCG01G013075 vs. ExPASy Swiss-Prot
Match: P07826 (Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psbA1 PE=1 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]
BLAST of ClCG01G013075 vs. ExPASy Swiss-Prot
Match: B1XIP3 (Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=psbA3 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]
BLAST of ClCG01G013075 vs. ExPASy Swiss-Prot
Match: Q8DIV4 (Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=psbA3 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]
BLAST of ClCG01G013075 vs. ExPASy Swiss-Prot
Match: P48265 (Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-06
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRALH 272

[Close]
BLAST of ClCG01G013075 vs. ExPASy TrEMBL
Match: A0A3P6HJ61 (Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISS 62
           FGQEEET +IVAAHGYFGRLIFQYA+ + +   YISS
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSFYISS 275

[Close]
BLAST of ClCG01G013075 vs. ExPASy TrEMBL
Match: A0A287U321 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-05
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 25 FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGL 67
          FGQEEET +IV AHGYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 57 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 97

[Close]
BLAST of ClCG01G013075 vs. ExPASy TrEMBL
Match: A0A287U3B3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-05
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGL 67
           FGQEEET +IV AHGYFGRLI QYA++ TTL+L+ SS LL L
Sbjct: 157 FGQEEETYNIVDAHGYFGRLILQYASL-TTLVLHTSSWLLSL 197

[Close]
BLAST of ClCG01G013075 vs. ExPASy TrEMBL
Match: D6BK85 (Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+
Sbjct: 146 FGQEEETYNIVAAHGYFGRLIFQYASFNNSLALH 179

[Close]
BLAST of ClCG01G013075 vs. ExPASy TrEMBL
Match: A0A650CAX4 (Photosystem II protein D1 (Fragment) OS=Hapalidiales sp. YA_Twist-2019 OX=2492742 GN=psbA PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILYISSELLGLKYVSG 72
           FGQEEET +IVAAHGYFGRLIFQYA+ + +L L+     LGL  V G
Sbjct: 213 FGQEEETYNIVAAHGYFGRLIFQYASFNNSLALHF---FLGLWPVVG 256

[Close]
BLAST of ClCG01G013075 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 51.6 bits (122), Expect = 3.1e-07
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 25  FGQEEETSHIVAAHGYFGRLIFQYANVSTTLILY 59
           FGQEEET +IVAAHGYFGRLIFQYA+ + +  L+
Sbjct: 239 FGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLH 272

The following BLAST results are available for this feature:
BLAST of ClCG01G013075 vs. NCBI nr
Match NameE-valueIdentityDescription
VDD65979.11.0e-0472.97unnamed protein product [Brassica oleracea][more]
KAG5122340.14.0e-0470.00hypothetical protein JHK84_040680 [Glycine max][more]
ADG03116.15.2e-0473.53photosystem II protein D1, partial [uncultured eukaryote][more]
QGR10201.15.2e-0463.83photosystem II D1 protein, partial [Hapalidiales sp. YA_Twist-2019][more]
ACF23897.16.8e-0473.53photosystem II protein D1, partial [uncultured bacterium][more]
BLAST of ClCG01G013075 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A5A8K92.0e-0673.53Photosystem II protein D1 2 OS=Acaryochloris marina (strain MBIC 11017) OX=32972... [more]
P078263.4e-0670.59Photosystem II protein D1 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1... [more]
B1XIP33.4e-0670.59Photosystem II protein D1 3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /... [more]
Q8DIV43.4e-0670.59Photosystem II protein D1 3 OS=Thermosynechococcus elongatus (strain BP-1) OX=19... [more]
P482653.4e-0670.59Photosystem II protein D1 OS=Bumilleriopsis filiformis OX=2835 GN=psbA PE=3 SV=1[more]
BLAST of ClCG01G013075 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3P6HJ615.1e-0572.97Photosystem II protein D1 OS=Brassica oleracea OX=3712 GN=BOLSC49T61207H PE=3 SV... [more]
A0A287U3216.6e-0571.43Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1[more]
A0A287U3B36.6e-0571.43Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1[more]
D6BK852.5e-0473.53Photosystem II protein D1 (Fragment) OS=uncultured eukaryote OX=100272 GN=psbA P... [more]
A0A650CAX42.5e-0463.83Photosystem II protein D1 (Fragment) OS=Hapalidiales sp. YA_Twist-2019 OX=249274... [more]
BLAST of ClCG01G013075 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00020.13.1e-0770.59photosystem II reaction center protein A [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036854Photosystem II protein D1/D2 superfamilySUPERFAMILY81483Bacterial photosystem II reaction centre, L and M subunitscoord: 23..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G013075.1ClCG01G013075.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009635 response to herbicide
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function GO:0010242 oxygen evolving activity