Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTCTACGTGAGTGTGAAAACCAGTGTTAGGCCCTAGGATTACTTCGGAATTGGCCTCTTATCTATCCCTTCGGGGCCATCTAATAAGATTGGAATTGGCCTCTTATCTCTTTTTTTTATTCTCAAAATCGGAGTTTGGACGTTCGGGGTATTGCCCCTTAATCGAGGAGTTGGACCATCTGTCTTTCCCCTCAAGGTGGAATGTGGAGGCTCCTGGTAACTGGGAGGGGTACAAGTTAGAAAAGTGGAAGGCTCTTAACCGATGCCAAAATCCAGAAATCAAAGAAACCTTTGGAGATATAAGGATAAAAAAGTAGGAGGTGTTAGGTAAAATTATTGTTATTGATGGTTTTGAAGAGGAGGACCGTTGGATGAGATACTCAAGCAAGAGCATCTCTTGTTAAAAGTGGAGTTTGTGGAGCTGGTAAGGAGAGAGACCATAAGTTGGAGAAAAAATGTGAAAGTAAGGTGGGCCAAGGATGGCGACTGTAATTCTGCATTTTTCCATAGAATGGTGACGGGTAGAAGAAGCAAGAACTTACTTGGCTCTTTAGAGAAAGATGGGGGAGTTGGTAAAAAGGGATACGGAAATCAAAAAGGAAAGGAAATATTATCTTTCATGCCCCAGAGGTGAACCCTAAACCCTTCATGGATGGCCTTAATTGAAGCCACCATCTTTGCAGGTGAACAGGCTGAGTTGGATTCCCCTTTTACCGTAGATGAAATCAAGAAAGTTGTTTTTGAGTGCAATACAAACAAAGCCCATGCGCATGATAGTTTCTCTGTTGCTTTCTTTCAAGATAATTGGGAGGAAATTAAGGAGGATTTTGCATGGGCGGAAATTAAGGAGGATCTCTGCACATGA
mRNA sequence
ATGGAGGTCTACGTGAGTGTGAAAACCAGTTTTGGACGTTCGGGGTATTGCCCCTTAATCGAGGAGTTGGACCATCTGTCTTTCCCCTCAAGGTGGAATGTGGAGGCTCCTGGTAACTGGGAGGGGTACAAGTTAGAAAAGTGGAAGGCTCTTAACCGATGCCAAAATCCAGAAATCAAAGAAACCTTTGGAGATATAAGGATAAAAAAAGGAGGACCGTTGGATGAGATACTCAAGCAAGAGCATCTCTTGTTAAAAGTGGAGTTTGTGGAGCTGGTAAGGAGAGAGACCATAAGTTGGAGAAAAAATGTGAAAGTAAGGTGGGCCAAGGATGGCGACTGTAATTCTGCATTTTTCCATAGAATGGTGACGGGTAGAAGAAGCAAGAACTTACTTGGCTCTTTAGAGAAAGATGGGGGAGTTGGTGAACAGGCTGAGTTGGATTCCCCTTTTACCGTAGATGAAATCAAGAAAGTTGTTTTTGAGTGCAATACAAACAAAGCCCATGCGCATGATAGTTTCTCTGTTGCTTTCTTTCAAGATAATTGGGAGGAAATTAAGGAGGATTTTGCATGGGCGGAAATTAAGGAGGATCTCTGCACATGA
Coding sequence (CDS)
ATGGAGGTCTACGTGAGTGTGAAAACCAGTTTTGGACGTTCGGGGTATTGCCCCTTAATCGAGGAGTTGGACCATCTGTCTTTCCCCTCAAGGTGGAATGTGGAGGCTCCTGGTAACTGGGAGGGGTACAAGTTAGAAAAGTGGAAGGCTCTTAACCGATGCCAAAATCCAGAAATCAAAGAAACCTTTGGAGATATAAGGATAAAAAAAGGAGGACCGTTGGATGAGATACTCAAGCAAGAGCATCTCTTGTTAAAAGTGGAGTTTGTGGAGCTGGTAAGGAGAGAGACCATAAGTTGGAGAAAAAATGTGAAAGTAAGGTGGGCCAAGGATGGCGACTGTAATTCTGCATTTTTCCATAGAATGGTGACGGGTAGAAGAAGCAAGAACTTACTTGGCTCTTTAGAGAAAGATGGGGGAGTTGGTGAACAGGCTGAGTTGGATTCCCCTTTTACCGTAGATGAAATCAAGAAAGTTGTTTTTGAGTGCAATACAAACAAAGCCCATGCGCATGATAGTTTCTCTGTTGCTTTCTTTCAAGATAATTGGGAGGAAATTAAGGAGGATTTTGCATGGGCGGAAATTAAGGAGGATCTCTGCACATGA
Protein sequence
MEVYVSVKTSFGRSGYCPLIEELDHLSFPSRWNVEAPGNWEGYKLEKWKALNRCQNPEIKETFGDIRIKKGGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKNLLGSLEKDGGVGEQAELDSPFTVDEIKKVVFECNTNKAHAHDSFSVAFFQDNWEEIKEDFAWAEIKEDLCT
Homology
BLAST of ClCG01G011670.1 vs. NCBI nr
Match:
TYK03178.1 (hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa])
HSP 1 Score: 122.5 bits (306), Expect = 4.2e-24
Identity = 73/208 (35.10%), Postives = 99/208 (47.60%), Query Frame = 0
Query: 38 GNWEGYK-LEKWKALNRCQNPEIKETFGDIRIKK---------------GGPLDEILKQE 97
G W+GY+ ++K +ALN ++ FGDI+IKK GPLD LK+E
Sbjct: 401 GRWQGYRFMDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDALELEGPLDSALKEE 460
Query: 98 HLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKNLLGSLEKDGG- 157
+ K + E++R+E +SW + K++W K+GDCN++FFHR RR+KN LG L D G
Sbjct: 461 RVSSKGDLAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAANDRRNKNHLGLLLLDNGK 520
Query: 158 ---------------------------------------VGEQAELDSPFTVDEIKKVVF 190
E +L FT+DE+KKVVF
Sbjct: 521 STRDGMEIDEEIIRSFSNFYSSKVWDKPLLEGIDWSPILTREDGDLVVSFTLDELKKVVF 580
BLAST of ClCG01G011670.1 vs. NCBI nr
Match:
RVW39477.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 120.2 bits (300), Expect = 2.1e-23
Identity = 74/197 (37.56%), Postives = 103/197 (52.28%), Query Frame = 0
Query: 23 LDHLSFP---SRWNVEAPGN-WEGYKLEKWKALNRCQNPEIKET-FGDIRIKK------- 82
L H SF RW E GN WEG+K + + + E +T FG++ KK
Sbjct: 20 LQHSSFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDILAVL 79
Query: 83 ---------GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHR 142
GG E+L Q L K E EL+ RE I WR+ +V+W K+GDCNS FFH+
Sbjct: 80 ANFDSLEQEGGLSHELLVQ-RALSKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHK 139
Query: 143 MVTGRRSKNLLGSLEKDGGV---------GEQAELDSPFTVDEIKKVVFECNTNKAHAHD 190
+ GRR++ + LE + G+ E L+SPFT +EI K +F+ + +KA D
Sbjct: 140 VANGRRNRKFIKELENESGLMLNNPESIKEEILRLESPFTEEEIYKAIFQMDRDKAPGPD 199
BLAST of ClCG01G011670.1 vs. NCBI nr
Match:
RVW16109.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 111.7 bits (278), Expect = 7.4e-21
Identity = 66/193 (34.20%), Postives = 99/193 (51.30%), Query Frame = 0
Query: 27 SFPSRWNVEAPGNWEGYKL--------EKWKALNRCQNPEIKETFGDI--------RIKK 86
+F W+ WEG+K K K N+ E+KE I I++
Sbjct: 812 NFRDWWSGFQGIGWEGHKFMRRLQYVKAKLKEWNKSSFGELKEKKKSILNDLANFDAIEQ 871
Query: 87 GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 146
G L+ L + + K E EL+ RE I WR+ KV+W K+GDCNS F+H++ GRR++
Sbjct: 872 EGGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRK 931
Query: 147 LLGSLEKDGG------------VGEQA--ELDSPFTVDEIKKVVFECNTNKAHAHDSFSV 190
+ LE + G + E++ L+SPFT +EI K +F+ + NKA D F++
Sbjct: 932 YIKELENERGESWGVEGLDWSPISEESALRLESPFTEEEISKAIFQLDRNKAPGPDGFTI 991
BLAST of ClCG01G011670.1 vs. NCBI nr
Match:
RVW17671.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 111.3 bits (277), Expect = 9.7e-21
Identity = 68/194 (35.05%), Postives = 98/194 (50.52%), Query Frame = 0
Query: 27 SFPSRWNVEAPGNWEGYKL--------EKWKALNRCQNPEIKETFGDI--------RIKK 86
+F W+ WEG+K K K N+ E+KE I I++
Sbjct: 106 NFRDWWSGFQGNGWEGHKFMRRLQYVKAKLKEWNKFSFGELKEKKKSILNDLANFDAIEQ 165
Query: 87 GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 146
G L+ L + K E EL+ RE I WR+ KV+W K+GDCNS F+H++ GRR++
Sbjct: 166 EGGLNPDLLSQRASRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRK 225
Query: 147 LLGSLEKDGG-VGEQAE--------------LDSPFTVDEIKKVVFECNTNKAHAHDSFS 190
+ LE + G V + AE LDSPFT +EI K +F+ + +KA D F+
Sbjct: 226 YIKELENERGLVLKNAERLDWSPISEEIALRLDSPFTEEEISKAIFQLDRDKAPGPDGFT 285
BLAST of ClCG01G011670.1 vs. NCBI nr
Match:
CAN65484.1 (hypothetical protein VITISV_029474 [Vitis vinifera])
HSP 1 Score: 110.9 bits (276), Expect = 1.3e-20
Identity = 75/227 (33.04%), Postives = 103/227 (45.37%), Query Frame = 0
Query: 23 LDHLSFP---SRWNVEAPGN-WEGYKL--------EKWKALNRCQNPEIKETFGDI---- 82
L H SF RW E GN WEG+K K K N+ E+ + DI
Sbjct: 911 LQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSDL 970
Query: 83 ----RIKKGGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRM 142
+++ G L L + L K E EL+ RE I WR+ +V+W K+GDCNS FFH++
Sbjct: 971 VNFDSLEQEGGLSHELLAQRALKKGELEELILREEIHWRQKARVKWVKEGDCNSRFFHKV 1030
Query: 143 VTGRRSKNLLGSLEKDGGV---------------------------------------GE 190
GRR++ + LE + G+ GE
Sbjct: 1031 ANGRRNRKFIKELENENGLMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGE 1090
BLAST of ClCG01G011670.1 vs. ExPASy TrEMBL
Match:
A0A5D3BW32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00830 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 73/208 (35.10%), Postives = 99/208 (47.60%), Query Frame = 0
Query: 38 GNWEGYK-LEKWKALNRCQNPEIKETFGDIRIKK---------------GGPLDEILKQE 97
G W+GY+ ++K +ALN ++ FGDI+IKK GPLD LK+E
Sbjct: 401 GRWQGYRFMDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDALELEGPLDSALKEE 460
Query: 98 HLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKNLLGSLEKDGG- 157
+ K + E++R+E +SW + K++W K+GDCN++FFHR RR+KN LG L D G
Sbjct: 461 RVSSKGDLAEMIRKENVSWSQKSKIKWTKEGDCNNSFFHRAANDRRNKNHLGLLLLDNGK 520
Query: 158 ---------------------------------------VGEQAELDSPFTVDEIKKVVF 190
E +L FT+DE+KKVVF
Sbjct: 521 STRDGMEIDEEIIRSFSNFYSSKVWDKPLLEGIDWSPILTREDGDLVVSFTLDELKKVVF 580
BLAST of ClCG01G011670.1 vs. ExPASy TrEMBL
Match:
A0A438DVH3 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_414 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 74/197 (37.56%), Postives = 103/197 (52.28%), Query Frame = 0
Query: 23 LDHLSFP---SRWNVEAPGN-WEGYKLEKWKALNRCQNPEIKET-FGDIRIKK------- 82
L H SF RW E GN WEG+K + + + E +T FG++ KK
Sbjct: 20 LQHSSFKENFGRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDILAVL 79
Query: 83 ---------GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHR 142
GG E+L Q L K E EL+ RE I WR+ +V+W K+GDCNS FFH+
Sbjct: 80 ANFDSLEQEGGLSHELLVQ-RALSKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHK 139
Query: 143 MVTGRRSKNLLGSLEKDGGV---------GEQAELDSPFTVDEIKKVVFECNTNKAHAHD 190
+ GRR++ + LE + G+ E L+SPFT +EI K +F+ + +KA D
Sbjct: 140 VANGRRNRKFIKELENESGLMLNNPESIKEEILRLESPFTEEEIYKAIFQMDRDKAPGPD 199
BLAST of ClCG01G011670.1 vs. ExPASy TrEMBL
Match:
A0A438BYN0 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_318 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 3.6e-21
Identity = 66/193 (34.20%), Postives = 99/193 (51.30%), Query Frame = 0
Query: 27 SFPSRWNVEAPGNWEGYKL--------EKWKALNRCQNPEIKETFGDI--------RIKK 86
+F W+ WEG+K K K N+ E+KE I I++
Sbjct: 812 NFRDWWSGFQGIGWEGHKFMRRLQYVKAKLKEWNKSSFGELKEKKKSILNDLANFDAIEQ 871
Query: 87 GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 146
G L+ L + + K E EL+ RE I WR+ KV+W K+GDCNS F+H++ GRR++
Sbjct: 872 EGGLNPDLISQRVSRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRK 931
Query: 147 LLGSLEKDGG------------VGEQA--ELDSPFTVDEIKKVVFECNTNKAHAHDSFSV 190
+ LE + G + E++ L+SPFT +EI K +F+ + NKA D F++
Sbjct: 932 YIKELENERGESWGVEGLDWSPISEESALRLESPFTEEEISKAIFQLDRNKAPGPDGFTI 991
BLAST of ClCG01G011670.1 vs. ExPASy TrEMBL
Match:
A0A438C362 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_819 PE=4 SV=1)
HSP 1 Score: 111.3 bits (277), Expect = 4.7e-21
Identity = 68/194 (35.05%), Postives = 98/194 (50.52%), Query Frame = 0
Query: 27 SFPSRWNVEAPGNWEGYKL--------EKWKALNRCQNPEIKETFGDI--------RIKK 86
+F W+ WEG+K K K N+ E+KE I I++
Sbjct: 106 NFRDWWSGFQGNGWEGHKFMRRLQYVKAKLKEWNKFSFGELKEKKKSILNDLANFDAIEQ 165
Query: 87 GGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 146
G L+ L + K E EL+ RE I WR+ KV+W K+GDCNS F+H++ GRR++
Sbjct: 166 EGGLNPDLLSQRASRKGELEELILREEIHWRQKAKVKWVKEGDCNSKFYHKVANGRRNRK 225
Query: 147 LLGSLEKDGG-VGEQAE--------------LDSPFTVDEIKKVVFECNTNKAHAHDSFS 190
+ LE + G V + AE LDSPFT +EI K +F+ + +KA D F+
Sbjct: 226 YIKELENERGLVLKNAERLDWSPISEEIALRLDSPFTEEEISKAIFQLDRDKAPGPDGFT 285
BLAST of ClCG01G011670.1 vs. ExPASy TrEMBL
Match:
A5BCI7 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_029474 PE=4 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 6.1e-21
Identity = 75/227 (33.04%), Postives = 103/227 (45.37%), Query Frame = 0
Query: 23 LDHLSFP---SRWNVEAPGN-WEGYKL--------EKWKALNRCQNPEIKETFGDI---- 82
L H SF RW E GN WEG+K K K N+ E+ + DI
Sbjct: 911 LQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSDL 970
Query: 83 ----RIKKGGPLDEILKQEHLLLKVEFVELVRRETISWRKNVKVRWAKDGDCNSAFFHRM 142
+++ G L L + L K E EL+ RE I WR+ +V+W K+GDCNS FFH++
Sbjct: 971 VNFDSLEQEGGLSHELLAQRALKKGELEELILREEIHWRQKARVKWVKEGDCNSRFFHKV 1030
Query: 143 VTGRRSKNLLGSLEKDGGV---------------------------------------GE 190
GRR++ + LE + G+ GE
Sbjct: 1031 ANGRRNRKFIKELENENGLMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGE 1090
BLAST of ClCG01G011670.1 vs. TAIR 10
Match:
AT1G43760.1 (DNAse I-like superfamily protein )
HSP 1 Score: 62.0 bits (149), Expect = 6.3e-10
Identity = 56/232 (24.14%), Postives = 92/232 (39.66%), Query Frame = 0
Query: 26 LSFPSRWNVEAPGNWEGYKL-EKWKALNRCQNPEIKETFGDIRIKKGGPLDEILKQEHLL 85
+S W + P + L E KA +C ++ FG+I+ K LD + + L
Sbjct: 346 VSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQL 405
Query: 86 LKVEFVELVRRETIS--------------WRKNVKVRWAKDGDCNSAFFHRMVTGRRSKN 145
L L R E ++ +R+ +++W +DGD N+ FFH+++ ++KN
Sbjct: 406 LTNPSDSLFRVEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKN 465
Query: 146 LLGSLEKDGGV--------------------GEQAELDSPFTVDEIKKV-VFECN----- 198
L+ L D V G +++ +P +V IK + F CN
Sbjct: 466 LIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLAS 525
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK03178.1 | 4.2e-24 | 35.10 | hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa] | [more] |
| RVW39477.1 | 2.1e-23 | 37.56 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
| RVW16109.1 | 7.4e-21 | 34.20 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
| RVW17671.1 | 9.7e-21 | 35.05 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
| CAN65484.1 | 1.3e-20 | 33.04 | hypothetical protein VITISV_029474 [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BW32 | 2.0e-24 | 35.10 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A438DVH3 | 1.0e-23 | 37.56 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
| A0A438BYN0 | 3.6e-21 | 34.20 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
| A0A438C362 | 4.7e-21 | 35.05 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
| A5BCI7 | 6.1e-21 | 33.04 | Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G43760.1 | 6.3e-10 | 24.14 | DNAse I-like superfamily protein | [more] |
