Chy8G153150.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy8G153150.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	glycine-rich cell wall structural protein 1.0-like
Location	chrH08: 14932242 .. 14933387 (+)
Sequence length	537
RNA-Seq Expression	Chy8G153150.1
Synteny	Chy8G153150.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGGGAAAAGATAAAATTGAAATCTATGTTGAAGGTGGAAATACGAGTACAACAGACAGCAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGCTGGAGATACAGTCAACGGCGAAGGTGGCTGGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGGAGCAAGTATTCATAAGACAGATTGTGGTGATGGTGATGGCGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTTCCAGTTATGGAGGTGGAGGAACAAGTTCTAATGATCAGGGCGTAGGTGGTGGTGGTGGTGGTGATGGAGGTGGGGGGTTTTCTGATTTTGGAGGAGGGGGAGGATCATCTATTTGGTGAACTCCAAAGATTGTTTAGTACAAATAAGAATCATTATGTTATCTTTGTAAGACCATATACCAAATTTTTTTTTTTTCTCATTACAGTGGGAATGTAAATGGTTGATTATAATAACAAAAAGACCATATACCAAAACTGCCGTAGAAATCAAACTTCTTGAATATCAAACCAACAAAATTATGATAATCATAAGCGCGTATATTATTACTACAAACCAAGTCAGGTTTTTCTCCAAAAGCACAAACTTGGAATGGGTCTAATCTCATCTCATTATGTAAAAAACAGAGCAAAACACTCAAATCGCTCAATGTTAAAACACAGTCAAAGGTTGTAGCCAAAAGGTATAAACTTTTGAAAGGTCAAACCATGTGGCTTCTCAATTTAACAATTCAAATATTTCTAAAATTTCTCGTCCCTATAAATCACAATTACAACCAACAGTTGATGTTAAACTAGAGATATTCCATAATTCAGAGACAATAATACAATATGGTTCAACCAGCATTCATCATCTTACCCCTTGTCTCGGGTTCCATCTTTATTGCTATGGTTGTGTTAAGTATTATTATCCTGAGAAGAGCTTATAATAGCAAAATTAAGATCCAGGGACACATCTACAATGGTGAGGGCCAAATTGACATAGTAGTCATTAATGATAGGAACAATATGAATACAAGCAGAGCTGTTGATGCAGGTGGTGATTAA

mRNA sequence

ATGTCTAAGGGAAAAGATAAAATTGAAATCTATGTTGAAGGTGGAAATACGAGTACAACAGACAGCAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGCTGGAGATACAGTCAACGGCGAAGGTGGCTGGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGGAGCAAGTATTCATAAGACAGATTGTGGTGATGGTGATGGCGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTTCCAGTTATGGAGCATTCATCATCTTACCCCTTGTCTCGGGTTCCATCTTTATTGCTATGGTTGTGTTAAGTATTATTATCCTGAGAAGAGCTTATAATAGCAAAATTAAGATCCAGGGACACATCTACAATGGTGAGGGCCAAATTGACATAGTAGTCATTAATGATAGGAACAATATGAATACAAGCAGAGCTGTTGATGCAGGTGGTGATTAA

Coding sequence (CDS)

ATGTCTAAGGGAAAAGATAAAATTGAAATCTATGTTGAAGGTGGAAATACGAGTACAACAGACAGCAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGCTGGAGATACAGTCAACGGCGAAGGTGGCTGGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGGAGCAAGTATTCATAAGACAGATTGTGGTGATGGTGATGGCGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTTCCAGTTATGGAGCATTCATCATCTTACCCCTTGTCTCGGGTTCCATCTTTATTGCTATGGTTGTGTTAAGTATTATTATCCTGAGAAGAGCTTATAATAGCAAAATTAAGATCCAGGGACACATCTACAATGGTGAGGGCCAAATTGACATAGTAGTCATTAATGATAGGAACAATATGAATACAAGCAGAGCTGTTGATGCAGGTGGTGATTAA

Protein sequence

MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDGNGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYGAFIILPLVSGSIFIAMVVLSIIILRRAYNSKIKIQGHIYNGEGQIDIVVINDRNNMNTSRAVDAGGD*

Homology

[Close]

BLAST of Chy8G153150.1 vs. ExPASy TrEMBL
Match: A0A0A0KXB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 100/111 (90.09%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
           MS GKDK  IYVEGGNTSTTDSNMFSGSSYGGWGWDWTFST GDTVNG  G NSLEVGDG
Sbjct: 1   MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60

Query: 61  NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYG 112
           NGGLTGGGGGGGS ASIH+TDCGDGD GGGGVSDHGVGVSSHVDGGG SYG
Sbjct: 61  NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYG 111

[Close]

BLAST of Chy8G153150.1 vs. ExPASy TrEMBL
Match: A0A5A7TNP5 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00930 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
           MSK KDKI IY+EGGNTSTTDSNMF+G+SYGGWGWDWTFST GDTVNGEGG NSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYG 112
           NGG+TGG GGGGSG SIH+T CG GD GG GVS+HGVGVSSHVD GG SYG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYG 110

[Close]

BLAST of Chy8G153150.1 vs. ExPASy TrEMBL
Match: A0A1S3BNC1 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491739 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
           MSK KDKI IY+EGGNTSTTDSNMF+G+SYGGWGWDWTFST GDTVNGEGG NSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYG 112
           NGG+TGG GGGGSG SIH+T CG GD GG GVS+HGVGVSSHVD GG SYG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYG 110

[Close]

BLAST of Chy8G153150.1 vs. ExPASy TrEMBL
Match: A0A6J1HSN5 (loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.1e-08
Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGE--------GGWNS 62
           +G ++I I V+ G+   T + MF+G  YGGWGWDWTFS+ GDT NG         GG   
Sbjct: 28  EGGNRIGIVVDDGSYVGT-TPMFNG-GYGGWGWDWTFSSVGDTGNGNDGGGCDVGGGGGD 87

Query: 63  LEVGD-----GNGGLTGGGGGGGSGASIHKTDCGDG---------DGGGGGVSDHGVGVS 112
            EVG      G G   G G G G+GAS H+   GDG          GGGG VSDHG G S
Sbjct: 88  SEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGTVSDHGGGGS 147

[Close]

BLAST of Chy8G153150.1 vs. ExPASy TrEMBL
Match: A0A6J1EUX9 (glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 59/133 (44.36%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGE----------GGW 62
           +G ++I I V+ G+   T + MF+G  YGGWGWDWTFS+ GDT NG           GG 
Sbjct: 48  EGGNRIGIVVDDGSYVGT-TPMFNG-GYGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGG 107

Query: 63  NSLEVGD-----GNGGLTGGGGGGGSGASIHKTDCGDG---------DGGGGGVSDHGVG 112
              EVG      G G   G G G G+GAS H+   GDG          GGGG VSD G G
Sbjct: 108 GDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGGGTVSDRGGG 167

[Close]

BLAST of Chy8G153150.1 vs. NCBI nr
Match: XP_008450026.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KAA0045153.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa] >TYK23585.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 3.03e-51
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
           MSK KDKI IY+EGGNTSTTDSNMF+G+SYGGWGWDWTFST GDTVNGEGG NSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYG 111
           NGG+TGG GGGGSG SIH+T CG GD GG GVS+HGVGVSSHVDGG  SYG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGG-HSYG 110

[Close]

BLAST of Chy8G153150.1 vs. NCBI nr
Match: KAE8649549.1 (hypothetical protein Csa_018168, partial [Cucumis sativus])

HSP 1 Score: 162 bits (411), Expect = 1.78e-48
Identity = 88/98 (89.80%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
          MS GKDK  IYVEGGNTSTTDSNMFSGSSYGGWGWDWTFST GDTVNG  G NSLEVGDG
Sbjct: 1  MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60

Query: 61 NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVG 98
          NGGLTGGGGGGGS ASIH+TDCGDGD GGGGVSDHGVG
Sbjct: 61 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVG 98

[Close]

BLAST of Chy8G153150.1 vs. NCBI nr
Match: XP_022966633.1 (loricrin-like [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 1.73e-10
Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGE--------GGWNS 62
           +G ++I I V+ G+   T + MF+G  YGGWGWDWTFS+ GDT NG         GG   
Sbjct: 28  EGGNRIGIVVDDGSYVGT-TPMFNGG-YGGWGWDWTFSSVGDTGNGNDGGGCDVGGGGGD 87

Query: 63  LEVGD-----GNGGLTGGGGGGGSGASIHKTDCGDGD---------GGGGGVSDHGVGVS 111
            EVG      G G   G G G G+GAS H+   GDG          GGGG VSDHG G S
Sbjct: 88  SEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGTVSDHGGGGS 147

[Close]

BLAST of Chy8G153150.1 vs. NCBI nr
Match: KAG6595345.1 (hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 3.90e-09
Identity = 58/133 (43.61%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEG-GWNSLEVGDGN 62
           +G ++I I V+ G+   T + MF+G  YGGWGWDWTFS+ GDT NG G G    +VG G 
Sbjct: 48  EGGNRIGIVVDDGSYVGT-TPMFNGG-YGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGG 107

Query: 63  GGL--------------TGGGGGGGSGASIHKTDCGDGD---------GGGGGVSDHGVG 111
           G                 G G G G+GAS H+   G G          GGGG VSDHG G
Sbjct: 108 GDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGGGGIASSFDECGGGGGTVSDHGGG 167

[Close]

BLAST of Chy8G153150.1 vs. NCBI nr
Match: XP_023518097.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 4.78e-09
Identity = 57/133 (42.86%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEG-GWNSLEVGDGN 62
           +G +++ I V+ G+   T + MF+G  YGGWGWDWTFS+ GD+ NG G G    +VG G 
Sbjct: 28  EGGNRLGIVVDDGSYVGT-TPMFNGG-YGGWGWDWTFSSVGDSGNGNGNGRGGCDVGGGG 87

Query: 63  GGLTGGG--------------GGGGSGASIHKTDCGDGD---------GGGGGVSDHGVG 111
           G    GG               G G+GAS H+   GDG          GGGG VSDHG G
Sbjct: 88  GDSEVGGRGCDVGRGDGVRCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGTVSDHGGG 147

The following BLAST results are available for this feature:

BLAST of Chy8G153150.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy8G153150.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXB6	1.9e-42	90.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1	[more]
A0A5A7TNP5	1.7e-38	83.78	Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BNC1	1.7e-38	83.78	glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1HSN5	9.1e-08	45.80	loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1	[more]
A0A6J1EUX9	1.3e-06	44.36	glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 ...	[more]

BLAST of Chy8G153150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450026.1	3.03e-51	83.78	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KA...	[more]
KAE8649549.1	1.78e-48	89.80	hypothetical protein Csa_018168, partial [Cucumis sativus]	[more]
XP_022966633.1	1.73e-10	45.80	loricrin-like [Cucurbita maxima]	[more]
KAG6595345.1	3.90e-09	43.61	hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023518097.1	4.78e-09	42.86	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy8G153150.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy8G153150	Chy8G153150	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy8G153150.1.exon1	Chy8G153150.1.exon1	exon
Chy8G153150.1.exon2	Chy8G153150.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy8G153150.1.cds1	Chy8G153150.1.cds1	CDS
Chy8G153150.1.cds2	Chy8G153150.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy8G153150.1	Chy8G153150.1-protein	polypeptide