Chy8G153150 (gene) Cucumber (hystrix) v1

Overview
NameChy8G153150
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionglycine-rich cell wall structural protein 1.0-like
LocationchrH08: 14932242 .. 14933387 (+)
RNA-Seq ExpressionChy8G153150
SyntenyChy8G153150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAAGGGAAAAGATAAAATTGAAATCTATGTTGAAGGTGGAAATACGAGTACAACAGACAGCAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGCTGGAGATACAGTCAACGGCGAAGGTGGCTGGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGGAGCAAGTATTCATAAGACAGATTGTGGTGATGGTGATGGCGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTTCCAGTTATGGAGGTGGAGGAACAAGTTCTAATGATCAGGGCGTAGGTGGTGGTGGTGGTGGTGATGGAGGTGGGGGGTTTTCTGATTTTGGAGGAGGGGGAGGATCATCTATTTGGTGAACTCCAAAGATTGTTTAGTACAAATAAGAATCATTATGTTATCTTTGTAAGACCATATACCAAATTTTTTTTTTTTCTCATTACAGTGGGAATGTAAATGGTTGATTATAATAACAAAAAGACCATATACCAAAACTGCCGTAGAAATCAAACTTCTTGAATATCAAACCAACAAAATTATGATAATCATAAGCGCGTATATTATTACTACAAACCAAGTCAGGTTTTTCTCCAAAAGCACAAACTTGGAATGGGTCTAATCTCATCTCATTATGTAAAAAACAGAGCAAAACACTCAAATCGCTCAATGTTAAAACACAGTCAAAGGTTGTAGCCAAAAGGTATAAACTTTTGAAAGGTCAAACCATGTGGCTTCTCAATTTAACAATTCAAATATTTCTAAAATTTCTCGTCCCTATAAATCACAATTACAACCAACAGTTGATGTTAAACTAGAGATATTCCATAATTCAGAGACAATAATACAATATGGTTCAACCAGCATTCATCATCTTACCCCTTGTCTCGGGTTCCATCTTTATTGCTATGGTTGTGTTAAGTATTATTATCCTGAGAAGAGCTTATAATAGCAAAATTAAGATCCAGGGACACATCTACAATGGTGAGGGCCAAATTGACATAGTAGTCATTAATGATAGGAACAATATGAATACAAGCAGAGCTGTTGATGCAGGTGGTGATTAA

mRNA sequence

ATGTCTAAGGGAAAAGATAAAATTGAAATCTATGTTGAAGGTGGAAATACGAGTACAACAGACAGCAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGCTGGAGATACAGTCAACGGCGAAGGTGGCTGGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGGAGCAAGTATTCATAAGACAGATTGTGGTGATGGTGATGGCGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTTCCAGTTATGGAGCATTCATCATCTTACCCCTTGTCTCGGGTTCCATCTTTATTGCTATGGTTGTGTTAAGTATTATTATCCTGAGAAGAGCTTATAATAGCAAAATTAAGATCCAGGGACACATCTACAATGGTGAGGGCCAAATTGACATAGTAGTCATTAATGATAGGAACAATATGAATACAAGCAGAGCTGTTGATGCAGGTGGTGATTAA

Coding sequence (CDS)

ATGTCTAAGGGAAAAGATAAAATTGAAATCTATGTTGAAGGTGGAAATACGAGTACAACAGACAGCAATATGTTTTCCGGCAGTAGTTATGGAGGTTGGGGTTGGGATTGGACTTTTAGCACTGCTGGAGATACAGTCAACGGCGAAGGTGGCTGGAATAGTCTTGAGGTTGGAGATGGAAATGGTGGCCTTACTGGAGGCGGCGGAGGAGGTGGCAGTGGAGCAAGTATTCATAAGACAGATTGTGGTGATGGTGATGGCGGAGGTGGAGGGGTTTCTGATCATGGAGTTGGTGTGAGTTCTCATGTGGATGGAGGAGGTTCCAGTTATGGAGCATTCATCATCTTACCCCTTGTCTCGGGTTCCATCTTTATTGCTATGGTTGTGTTAAGTATTATTATCCTGAGAAGAGCTTATAATAGCAAAATTAAGATCCAGGGACACATCTACAATGGTGAGGGCCAAATTGACATAGTAGTCATTAATGATAGGAACAATATGAATACAAGCAGAGCTGTTGATGCAGGTGGTGATTAA

Protein sequence

MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDGNGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYGAFIILPLVSGSIFIAMVVLSIIILRRAYNSKIKIQGHIYNGEGQIDIVVINDRNNMNTSRAVDAGGD*
Homology
BLAST of Chy8G153150 vs. ExPASy TrEMBL
Match: A0A0A0KXB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 100/111 (90.09%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 1   MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
           MS GKDK  IYVEGGNTSTTDSNMFSGSSYGGWGWDWTFST GDTVNG  G NSLEVGDG
Sbjct: 1   MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60

Query: 61  NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYG 112
           NGGLTGGGGGGGS ASIH+TDCGDGD GGGGVSDHGVGVSSHVDGGG SYG
Sbjct: 61  NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVGVSSHVDGGGFSYG 111

BLAST of Chy8G153150 vs. ExPASy TrEMBL
Match: A0A5A7TNP5 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00930 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0

Query: 1   MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
           MSK KDKI IY+EGGNTSTTDSNMF+G+SYGGWGWDWTFST GDTVNGEGG NSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYG 112
           NGG+TGG GGGGSG SIH+T CG GD GG GVS+HGVGVSSHVD GG SYG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYG 110

BLAST of Chy8G153150 vs. ExPASy TrEMBL
Match: A0A1S3BNC1 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491739 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0

Query: 1   MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
           MSK KDKI IY+EGGNTSTTDSNMF+G+SYGGWGWDWTFST GDTVNGEGG NSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYG 112
           NGG+TGG GGGGSG SIH+T CG GD GG GVS+HGVGVSSHVD GG SYG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVD-GGHSYG 110

BLAST of Chy8G153150 vs. ExPASy TrEMBL
Match: A0A6J1HSN5 (loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.1e-08
Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 0

Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGE--------GGWNS 62
           +G ++I I V+ G+   T + MF+G  YGGWGWDWTFS+ GDT NG         GG   
Sbjct: 28  EGGNRIGIVVDDGSYVGT-TPMFNG-GYGGWGWDWTFSSVGDTGNGNDGGGCDVGGGGGD 87

Query: 63  LEVGD-----GNGGLTGGGGGGGSGASIHKTDCGDG---------DGGGGGVSDHGVGVS 112
            EVG      G G   G G G G+GAS H+   GDG          GGGG VSDHG G S
Sbjct: 88  SEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGTVSDHGGGGS 147

BLAST of Chy8G153150 vs. ExPASy TrEMBL
Match: A0A6J1EUX9 (glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 59/133 (44.36%), Postives = 72/133 (54.14%), Query Frame = 0

Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGE----------GGW 62
           +G ++I I V+ G+   T + MF+G  YGGWGWDWTFS+ GDT NG           GG 
Sbjct: 48  EGGNRIGIVVDDGSYVGT-TPMFNG-GYGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGG 107

Query: 63  NSLEVGD-----GNGGLTGGGGGGGSGASIHKTDCGDG---------DGGGGGVSDHGVG 112
              EVG      G G   G G G G+GAS H+   GDG          GGGG VSD G G
Sbjct: 108 GDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGDGGIASSFDECGGGGGTVSDRGGG 167

BLAST of Chy8G153150 vs. NCBI nr
Match: XP_008450026.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KAA0045153.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa] >TYK23585.1 glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 3.03e-51
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0

Query: 1   MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
           MSK KDKI IY+EGGNTSTTDSNMF+G+SYGGWGWDWTFST GDTVNGEGG NSLEVGDG
Sbjct: 1   MSKRKDKIGIYLEGGNTSTTDSNMFTGTSYGGWGWDWTFSTVGDTVNGEGGENSLEVGDG 60

Query: 61  NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVGVSSHVDGGGSSYG 111
           NGG+TGG GGGGSG SIH+T CG GD GG GVS+HGVGVSSHVDGG  SYG
Sbjct: 61  NGGITGGNGGGGSGVSIHETGCGGGDSGGRGVSEHGVGVSSHVDGG-HSYG 110

BLAST of Chy8G153150 vs. NCBI nr
Match: KAE8649549.1 (hypothetical protein Csa_018168, partial [Cucumis sativus])

HSP 1 Score: 162 bits (411), Expect = 1.78e-48
Identity = 88/98 (89.80%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 1  MSKGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEGGWNSLEVGDG 60
          MS GKDK  IYVEGGNTSTTDSNMFSGSSYGGWGWDWTFST GDTVNG  G NSLEVGDG
Sbjct: 1  MSTGKDKNGIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTVGDTVNGGSGRNSLEVGDG 60

Query: 61 NGGLTGGGGGGGSGASIHKTDCGDGDGGGGGVSDHGVG 98
          NGGLTGGGGGGGS ASIH+TDCGDGD GGGGVSDHGVG
Sbjct: 61 NGGLTGGGGGGGSEASIHETDCGDGDRGGGGVSDHGVG 98

BLAST of Chy8G153150 vs. NCBI nr
Match: XP_022966633.1 (loricrin-like [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 1.73e-10
Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 0

Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGE--------GGWNS 62
           +G ++I I V+ G+   T + MF+G  YGGWGWDWTFS+ GDT NG         GG   
Sbjct: 28  EGGNRIGIVVDDGSYVGT-TPMFNGG-YGGWGWDWTFSSVGDTGNGNDGGGCDVGGGGGD 87

Query: 63  LEVGD-----GNGGLTGGGGGGGSGASIHKTDCGDGD---------GGGGGVSDHGVGVS 111
            EVG      G G   G G G G+GAS H+   GDG          GGGG VSDHG G S
Sbjct: 88  SEVGGRGSDVGRGDGVGCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGTVSDHGGGGS 147

BLAST of Chy8G153150 vs. NCBI nr
Match: KAG6595345.1 (hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 3.90e-09
Identity = 58/133 (43.61%), Postives = 72/133 (54.14%), Query Frame = 0

Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEG-GWNSLEVGDGN 62
           +G ++I I V+ G+   T + MF+G  YGGWGWDWTFS+ GDT NG G G    +VG G 
Sbjct: 48  EGGNRIGIVVDDGSYVGT-TPMFNGG-YGGWGWDWTFSSVGDTGNGNGNGGGGCDVGGGG 107

Query: 63  GGL--------------TGGGGGGGSGASIHKTDCGDGD---------GGGGGVSDHGVG 111
           G                 G G G G+GAS H+   G G          GGGG VSDHG G
Sbjct: 108 GDSEVGGRGSDIGRGDGVGCGNGDGNGASFHEAGGGGGGIASSFDECGGGGGTVSDHGGG 167

BLAST of Chy8G153150 vs. NCBI nr
Match: XP_023518097.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 4.78e-09
Identity = 57/133 (42.86%), Postives = 73/133 (54.89%), Query Frame = 0

Query: 3   KGKDKIEIYVEGGNTSTTDSNMFSGSSYGGWGWDWTFSTAGDTVNGEG-GWNSLEVGDGN 62
           +G +++ I V+ G+   T + MF+G  YGGWGWDWTFS+ GD+ NG G G    +VG G 
Sbjct: 28  EGGNRLGIVVDDGSYVGT-TPMFNGG-YGGWGWDWTFSSVGDSGNGNGNGRGGCDVGGGG 87

Query: 63  GGLTGGG--------------GGGGSGASIHKTDCGDGD---------GGGGGVSDHGVG 111
           G    GG               G G+GAS H+   GDG          GGGG VSDHG G
Sbjct: 88  GDSEVGGRGCDVGRGDGVRCGNGDGNGASFHEAGGGDGGVASSFDECGGGGGTVSDHGGG 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXB61.9e-4290.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297450 PE=4 SV=1[more]
A0A5A7TNP51.7e-3883.78Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3BNC11.7e-3883.78glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1HSN59.1e-0845.80loricrin-like OS=Cucurbita maxima OX=3661 GN=LOC111466258 PE=4 SV=1[more]
A0A6J1EUX91.3e-0644.36glycine-rich protein 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438150 PE=4 ... [more]
Match NameE-valueIdentityDescription
XP_008450026.13.03e-5183.78PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo] >KA... [more]
KAE8649549.11.78e-4889.80hypothetical protein Csa_018168, partial [Cucumis sativus][more]
XP_022966633.11.73e-1045.80loricrin-like [Cucurbita maxima][more]
KAG6595345.13.90e-0943.61hypothetical protein SDJN03_11898, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023518097.14.78e-0942.86glycine-rich protein 5-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G153150.1Chy8G153150.1mRNA