Chy6G119340.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy6G119340.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 14732641 .. 14736903 (+)
Sequence length	229
RNA-Seq Expression	Chy6G119340.1
Synteny	Chy6G119340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGTATGTTGTTTTTTACTTTTATCCTTTTTTTCTTATTATTGAAACATTGAATTTACAGGTTTGAAATACAAAAACCTCCTCACACATCCTTTTCTACTAGTTGCCTACAAAAAAGAACTAGAACTCTGTCTAATAGAAACACCAAGATGACCTATGTTTGCCCCAAACTATCAGAATTCCTCTTTTTTTTGGTAGAGCTTAAAGCGGCGGGGCTACTTTTACTGATTCGTTAGAAGTATTGTACAATCTGAAACTCAGAATTTTTAAGCTTTTGAATGCATAGGTATAATAATTTTACTTCATCTTATCAGAATTTAGTTTTGGCTTTTGGGGACTGGGAACAGTTTCCGTTATCCATCTTATTAAATTTTACTTCAACTAACTCTTACAAAAATTACTTTTATATCACGGAAGGATGAGCCTACCAATCACTTCATCAAAGTGGAATTTATGTCTTTTAGGATTTCTTTTGATAATTTATTAAGGGGAAGAGTGATAATTGAGGAAAGAGGGAGAATTGTGGTTCTATTTCGTTTCAACTGGTTTCAGCTATCTAGAATGAGGACTGTCTATAGTGTGTGCTAGATAACTCCAAACATAACTTATTTTCAAAACGAACAAGGTATAATAATTATATATTTTCATCAGGTTACATATTATTGTTGGAGAAATCCTTTTCAGAGTTGTTGAAATTTTCTTTCACGATTTTAACTGGAGTGAAAATTAGTATTCTCTAAGGTGAGCGAATGAAGATTTTATGATCCTTCTTAAAAAATTTCCCACTAAATGGACACTGCTTTTCTTTAACAAGAAGCAATAAATAAAAAAAGTCAGTTTCAAAATGTTGAGAGAATAAAAGAGACTAATGCTCAAAGATACAAATTTCAGGAGAGAATGAGAAAAGAACTGAACAAAATACAAAAAGAACCATTACAAACCCATCAAAGCACAAATTACAGAGTTGAGTTGAGACACTTTAATCAAACAAGAAGTTGCTAGGAAGGAAGGATCAAAATTTTACTGTGATTTATCCTTGTGGACACCATAGAGATTAAGAAAATGTTCCCTTTTTTTGTGTGTGTGTTGAGAGGGGGGGGGGGGGGAGAGATAATGTACCAGATACTGAGGATTGAGAAGTGGTTAATAAAGTTATTGACGATAGGAGTAAGGCTTGGAAAGACAACTAGAGAAGAAAAATTGGAGACGTGGTGATCAGTAAAATTATGAAGAAATTTGTGAGATGCGGAGAATAGAAAAACAATGGAGCAGAAAAATTGGAAAACTGATTAAAGGAAACACTGCAAGTCTTTCCATTAATGATTTCAAGTGGGAAATGGCTAATATTCTTACTAACACTCTGTTTTATAGTGCTTGGTACAACATTTGGTAACCTTTGAAGAACATGATTGATGAGGATAACATGCTGAATCTAGTTCGTCTTGATATGGTATTTCATAAATTTGTGACCAAAGCCTGCCCCACGTGGCCCTCTCTCCCCATAGTTGTCTCATTTGCGAGTTTGGATTTGACTAATCTAGTCACCTCTTCATTCACTGTCACTTTGCAAAGAGGTTTTGGAAGGAGATCTTCCTTTCTTTTGGTTGGTTCACTGCCCTCCCAAAAGACACTTATCACGCTCTCACTTATACTCATCAGTTATCCCTTTACAAAGCAAAAGAAAATCATGTGGATGCATATGATTCGTGCTTTCTTATGGATCACATGGAAGGAGAGAAACAAGTGCCTCTTCAAAGATAAGGGAAGCTCTTTTGATTGATATTTTGGAGTCTGATTCTATGTTCTCAATATCTTTCATGCTATGAGTTGGTGTAATTGCACACCTTTCTTTAATACATACACCCTTTTTTCCCTTTTTGACTAATTGGAGAAATCTATCGTAACTCCTCTGGCTTTGTCTTCAGCCCTTTTTTGTTCAAGGCAGACTATGAAATATTTGGGAAGAAAATTTCTATTGAGCTCTCTTTTTTTTCTTATTTAATTAAGTAGATTCTCACCTTTTTCACTTTTTTTTTTATATCAGTGAGTACCGATGTCAACCTATGCAAACCTCGACTGATCTCACAGTGCGACCTGTCTGATTCTATAACATTTGGGTGTTAAAACATACTCATAGGATATTAATTCCTAAGTAAATGACCACCATGGATTCAATGACCTCTACGCTCTTTATTGAAATAATGTCTCTTTTTTACCACTAGGTTAACCCATAATTGTTTATCCCATTTCTTTTATGAAAGACCGTCAAGTTGCTGATATTCTTATGCATTCAGGGAGCTCTCTATCTCGTTCATTTGGGTTCATCTAGTACGACAGAGAAACAAAGGTTTTGACACTTTGTTCTTTACTAGAAGAGGTTTTTCTTGTAGATCATTGTTCCATTTTTTTTACTGGATTCCTCTCCTAAGGATTTGGTTTTCTTGCTCATTTGGAAAGTGGATCCTAAACTAAGTTGAAGTTCTTGTTTCGGGATAAAAGGGAGAGTTTTGTGATGATTTTCCCCCCTCAATTTGTTGATAATGTGGTGAGAAGGGGCTGAGATACTTAACTTCAGAAGGTTATGTGGTTGGTTATATACTCATGTGGTCACTATACCCTTACATGTACCATTTATTCTTGTTCAAGAACCATTGATCAATACGGAACAGAATACAATGCTGAATGTCTTAGCTGTTTTATCATTGCTCTCCCATTTTCACCTTAGGCTCGAGAGGGGGATGTCCACCTTTGGACTTGTTCGTCCAAAAGTTTTCTGTGTATCTTTTTTCTAGTGTTTAGACAACCCACCCTTCTCGGGAGTCTGATTCTATGTTCTCTATATGGAATGTAAAAATTCTGAATAACGTAAAGTTCTTTGGGTGACAAATTTTACATGGATTAGTTGGATTGGATCTTGACCAGAGAACCATAGGGAACCTAGATCCGATCATGTGAATTTGTGAGTATACTCTGCAGTCTGGCATAAGTTCTTTGAGGTGTTCAATTTTGAGCTTTGTTTGCTATTAAAGTTGCAGGGAGTCAGGCGAGGAGCTTATCCTCCAACTGCCATTTTGTGAAAAGATATGGCTGTTTTTGTGGCAGGCTTGGATGTTTGCTATTTTATGGGGGTTGTGGGGTGAAGAAACAACAGAATTTTCATTGGATGTGAGGATTCTTATAGTGCGAATTTTGTTCTCTTGCTAGATTCTCTAGGATTTGATTTTCAAGTTTCTATTCTTTTTTTTTTTTCCTCCTTCGTTAGGTCTTATTTCTCTTATTGGAACCCTTTTTTGTAGTTTGACTCCCTTTCCTGAGTTTTAAATTTTGTAAGTTCGTGTGTTCTTTCTTTTATCTTTTTCTCCTCTTAATGAAAGTTAAGTTGATTATTTTGGGTTTTCTTTTCCCCTTCTACCATAAAGATTTAAGATTTGTGGCGGGTTAGTTTTTCTATTTTGTGGGTAGTGTGGCTCAAGCCGAATAGAAGGATTTTGAAAGGGGCTGGGAGAGGTCTTTGGTTGAGGTGTATCAGGTGAGGTTTAATGCGTCGTTAGGTGTGGGTGTCCATTAGTCCTTTTTTTTCTTGTCATTATCACTGTGTGGATTGAAGAACTTTTTTGTAGTTGAAGTCTCATGTTGAGGGGTTTATTTATTTTTTGGTATGCTCTTGTATATTTTTCATGTTTCTCAATGAAAGTTGGATTTCTTATCCAACAAAATGTCTCTACTGTAATACCCTTTTCTCTATTTTCTTCTTTTTCACTTTTTGCATCGCAATTTACTTGGAAAGCTTATTGGAACTTTATTTGTTTTATTTCCATATTATTTTTGGTTTTGGAATATGTTATGTACGGGTGTCGTGAATGTTCTCGCTCAGTATCCTTTGAAGGAGTAGATCTAATTTGCTTTGAGAGATGCAAATTTGTATCCAAATTAACTAACTTTTGCTCCAATATAAGTTTCTAAGCTCCCTGACTTCATCGCAAAAGGATTATGTAATATTGTTGTTTGTGCATTGAGATTTGTGGTATATGCCATAGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATAAAGCTACCGCCTTGTTGTGTTGCCTTGACCTTGCATCCATGAGCTGCAAGACAAGTTTGGGGGTCAAGGAACGAGCATACTAGCTGTTGGTTTGTCTGTTTTGTCGCATCGTTGGTTCAACTTGCATAA

mRNA sequence

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATAAAGCTACCGCCTTGTTGTGTTGCCTTGACCTTGCATCCATGAGCTGCAAGACAAGTTTGGGGGTCAAGGAACGAGCATACTAGCTGTTGGTTTGTCTGTTTTGTCGCATCGTTGGTTCAACTTGCATAA

Coding sequence (CDS)

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATAAAGCTACCGCCTTGTTGTGTTGCCTTGACCTTGCATCCATGAGCTGCAAGACAAGTTTGGGGGTCAAGGAACGAGCATACTAGCTGTTGGTTTGTCTGTTTTGTCGCATCGTTGGTTCAACTTGCATAA

Protein sequence

MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYKATALLCCLDLASMSCKTSLGVKERAY*LLVCLFCRIVGSTCIX

Homology

[Close]

BLAST of Chy6G119340.1 vs. ExPASy TrEMBL
Match: A0A0A0LCD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G259710 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYKATALLCCLDLASMSCKTSLGVK-ERA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQY+ATALLCCLDLASMSCKTSLG + E A
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 Y*LLVCLFCRIV 72
              +CL   +V
Sbjct: 61 SCWFICLVASLV 72

[Close]

BLAST of Chy6G119340.1 vs. NCBI nr
Match: KGN57721.1 (hypothetical protein Csa_009912 [Cucumis sativus])

HSP 1 Score: 113 bits (282), Expect = 7.93e-31
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYKATALLCCLDLASMSCKTSLGVK-ERA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQY+ATALLCCLDLASMSCKTSLG + E A
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 Y*LLVCLFCRIV 71
              +CL   +V
Sbjct: 61 SCWFICLVASLV 72

The following BLAST results are available for this feature:

BLAST of Chy6G119340.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G119340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCD7	1.1e-21	80.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G259710 PE=4 SV=1	[more]

BLAST of Chy6G119340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57721.1	7.93e-31	80.56	hypothetical protein Csa_009912 [Cucumis sativus]	[more]

BLAST of Chy6G119340.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy6G119340	Chy6G119340	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G119340.1.exon1	Chy6G119340.1.exon1	exon
Chy6G119340.1.exon2	Chy6G119340.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G119340.1.cds1	Chy6G119340.1.cds1	CDS
Chy6G119340.1.cds2	Chy6G119340.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy6G119340.1	Chy6G119340.1-protein	polypeptide