Chy6G119340 (gene) Cucumber (hystrix) v1

Overview
NameChy6G119340
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 14732641 .. 14736903 (+)
RNA-Seq ExpressionChy6G119340
SyntenyChy6G119340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGTATGTTGTTTTTTACTTTTATCCTTTTTTTCTTATTATTGAAACATTGAATTTACAGGTTTGAAATACAAAAACCTCCTCACACATCCTTTTCTACTAGTTGCCTACAAAAAAGAACTAGAACTCTGTCTAATAGAAACACCAAGATGACCTATGTTTGCCCCAAACTATCAGAATTCCTCTTTTTTTTGGTAGAGCTTAAAGCGGCGGGGCTACTTTTACTGATTCGTTAGAAGTATTGTACAATCTGAAACTCAGAATTTTTAAGCTTTTGAATGCATAGGTATAATAATTTTACTTCATCTTATCAGAATTTAGTTTTGGCTTTTGGGGACTGGGAACAGTTTCCGTTATCCATCTTATTAAATTTTACTTCAACTAACTCTTACAAAAATTACTTTTATATCACGGAAGGATGAGCCTACCAATCACTTCATCAAAGTGGAATTTATGTCTTTTAGGATTTCTTTTGATAATTTATTAAGGGGAAGAGTGATAATTGAGGAAAGAGGGAGAATTGTGGTTCTATTTCGTTTCAACTGGTTTCAGCTATCTAGAATGAGGACTGTCTATAGTGTGTGCTAGATAACTCCAAACATAACTTATTTTCAAAACGAACAAGGTATAATAATTATATATTTTCATCAGGTTACATATTATTGTTGGAGAAATCCTTTTCAGAGTTGTTGAAATTTTCTTTCACGATTTTAACTGGAGTGAAAATTAGTATTCTCTAAGGTGAGCGAATGAAGATTTTATGATCCTTCTTAAAAAATTTCCCACTAAATGGACACTGCTTTTCTTTAACAAGAAGCAATAAATAAAAAAAGTCAGTTTCAAAATGTTGAGAGAATAAAAGAGACTAATGCTCAAAGATACAAATTTCAGGAGAGAATGAGAAAAGAACTGAACAAAATACAAAAAGAACCATTACAAACCCATCAAAGCACAAATTACAGAGTTGAGTTGAGACACTTTAATCAAACAAGAAGTTGCTAGGAAGGAAGGATCAAAATTTTACTGTGATTTATCCTTGTGGACACCATAGAGATTAAGAAAATGTTCCCTTTTTTTGTGTGTGTGTTGAGAGGGGGGGGGGGGGGAGAGATAATGTACCAGATACTGAGGATTGAGAAGTGGTTAATAAAGTTATTGACGATAGGAGTAAGGCTTGGAAAGACAACTAGAGAAGAAAAATTGGAGACGTGGTGATCAGTAAAATTATGAAGAAATTTGTGAGATGCGGAGAATAGAAAAACAATGGAGCAGAAAAATTGGAAAACTGATTAAAGGAAACACTGCAAGTCTTTCCATTAATGATTTCAAGTGGGAAATGGCTAATATTCTTACTAACACTCTGTTTTATAGTGCTTGGTACAACATTTGGTAACCTTTGAAGAACATGATTGATGAGGATAACATGCTGAATCTAGTTCGTCTTGATATGGTATTTCATAAATTTGTGACCAAAGCCTGCCCCACGTGGCCCTCTCTCCCCATAGTTGTCTCATTTGCGAGTTTGGATTTGACTAATCTAGTCACCTCTTCATTCACTGTCACTTTGCAAAGAGGTTTTGGAAGGAGATCTTCCTTTCTTTTGGTTGGTTCACTGCCCTCCCAAAAGACACTTATCACGCTCTCACTTATACTCATCAGTTATCCCTTTACAAAGCAAAAGAAAATCATGTGGATGCATATGATTCGTGCTTTCTTATGGATCACATGGAAGGAGAGAAACAAGTGCCTCTTCAAAGATAAGGGAAGCTCTTTTGATTGATATTTTGGAGTCTGATTCTATGTTCTCAATATCTTTCATGCTATGAGTTGGTGTAATTGCACACCTTTCTTTAATACATACACCCTTTTTTCCCTTTTTGACTAATTGGAGAAATCTATCGTAACTCCTCTGGCTTTGTCTTCAGCCCTTTTTTGTTCAAGGCAGACTATGAAATATTTGGGAAGAAAATTTCTATTGAGCTCTCTTTTTTTTCTTATTTAATTAAGTAGATTCTCACCTTTTTCACTTTTTTTTTTATATCAGTGAGTACCGATGTCAACCTATGCAAACCTCGACTGATCTCACAGTGCGACCTGTCTGATTCTATAACATTTGGGTGTTAAAACATACTCATAGGATATTAATTCCTAAGTAAATGACCACCATGGATTCAATGACCTCTACGCTCTTTATTGAAATAATGTCTCTTTTTTACCACTAGGTTAACCCATAATTGTTTATCCCATTTCTTTTATGAAAGACCGTCAAGTTGCTGATATTCTTATGCATTCAGGGAGCTCTCTATCTCGTTCATTTGGGTTCATCTAGTACGACAGAGAAACAAAGGTTTTGACACTTTGTTCTTTACTAGAAGAGGTTTTTCTTGTAGATCATTGTTCCATTTTTTTTACTGGATTCCTCTCCTAAGGATTTGGTTTTCTTGCTCATTTGGAAAGTGGATCCTAAACTAAGTTGAAGTTCTTGTTTCGGGATAAAAGGGAGAGTTTTGTGATGATTTTCCCCCCTCAATTTGTTGATAATGTGGTGAGAAGGGGCTGAGATACTTAACTTCAGAAGGTTATGTGGTTGGTTATATACTCATGTGGTCACTATACCCTTACATGTACCATTTATTCTTGTTCAAGAACCATTGATCAATACGGAACAGAATACAATGCTGAATGTCTTAGCTGTTTTATCATTGCTCTCCCATTTTCACCTTAGGCTCGAGAGGGGGATGTCCACCTTTGGACTTGTTCGTCCAAAAGTTTTCTGTGTATCTTTTTTCTAGTGTTTAGACAACCCACCCTTCTCGGGAGTCTGATTCTATGTTCTCTATATGGAATGTAAAAATTCTGAATAACGTAAAGTTCTTTGGGTGACAAATTTTACATGGATTAGTTGGATTGGATCTTGACCAGAGAACCATAGGGAACCTAGATCCGATCATGTGAATTTGTGAGTATACTCTGCAGTCTGGCATAAGTTCTTTGAGGTGTTCAATTTTGAGCTTTGTTTGCTATTAAAGTTGCAGGGAGTCAGGCGAGGAGCTTATCCTCCAACTGCCATTTTGTGAAAAGATATGGCTGTTTTTGTGGCAGGCTTGGATGTTTGCTATTTTATGGGGGTTGTGGGGTGAAGAAACAACAGAATTTTCATTGGATGTGAGGATTCTTATAGTGCGAATTTTGTTCTCTTGCTAGATTCTCTAGGATTTGATTTTCAAGTTTCTATTCTTTTTTTTTTTTCCTCCTTCGTTAGGTCTTATTTCTCTTATTGGAACCCTTTTTTGTAGTTTGACTCCCTTTCCTGAGTTTTAAATTTTGTAAGTTCGTGTGTTCTTTCTTTTATCTTTTTCTCCTCTTAATGAAAGTTAAGTTGATTATTTTGGGTTTTCTTTTCCCCTTCTACCATAAAGATTTAAGATTTGTGGCGGGTTAGTTTTTCTATTTTGTGGGTAGTGTGGCTCAAGCCGAATAGAAGGATTTTGAAAGGGGCTGGGAGAGGTCTTTGGTTGAGGTGTATCAGGTGAGGTTTAATGCGTCGTTAGGTGTGGGTGTCCATTAGTCCTTTTTTTTCTTGTCATTATCACTGTGTGGATTGAAGAACTTTTTTGTAGTTGAAGTCTCATGTTGAGGGGTTTATTTATTTTTTGGTATGCTCTTGTATATTTTTCATGTTTCTCAATGAAAGTTGGATTTCTTATCCAACAAAATGTCTCTACTGTAATACCCTTTTCTCTATTTTCTTCTTTTTCACTTTTTGCATCGCAATTTACTTGGAAAGCTTATTGGAACTTTATTTGTTTTATTTCCATATTATTTTTGGTTTTGGAATATGTTATGTACGGGTGTCGTGAATGTTCTCGCTCAGTATCCTTTGAAGGAGTAGATCTAATTTGCTTTGAGAGATGCAAATTTGTATCCAAATTAACTAACTTTTGCTCCAATATAAGTTTCTAAGCTCCCTGACTTCATCGCAAAAGGATTATGTAATATTGTTGTTTGTGCATTGAGATTTGTGGTATATGCCATAGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATAAAGCTACCGCCTTGTTGTGTTGCCTTGACCTTGCATCCATGAGCTGCAAGACAAGTTTGGGGGTCAAGGAACGAGCATACTAGCTGTTGGTTTGTCTGTTTTGTCGCATCGTTGGTTCAACTTGCATAA

mRNA sequence

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATAAAGCTACCGCCTTGTTGTGTTGCCTTGACCTTGCATCCATGAGCTGCAAGACAAGTTTGGGGGTCAAGGAACGAGCATACTAGCTGTTGGTTTGTCTGTTTTGTCGCATCGTTGGTTCAACTTGCATAA

Coding sequence (CDS)

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATAAAGCTACCGCCTTGTTGTGTTGCCTTGACCTTGCATCCATGAGCTGCAAGACAAGTTTGGGGGTCAAGGAACGAGCATACTAGCTGTTGGTTTGTCTGTTTTGTCGCATCGTTGGTTCAACTTGCATAA

Protein sequence

MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYKATALLCCLDLASMSCKTSLGVKERAY*LLVCLFCRIVGSTCIX
Homology
[Close]
BLAST of Chy6G119340 vs. ExPASy TrEMBL
Match: A0A0A0LCD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G259710 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYKATALLCCLDLASMSCKTSLGVK-ERA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQY+ATALLCCLDLASMSCKTSLG + E A
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 Y*LLVCLFCRIV 72
              +CL   +V
Sbjct: 61 SCWFICLVASLV 72

[Close]
BLAST of Chy6G119340 vs. NCBI nr
Match: KGN57721.1 (hypothetical protein Csa_009912 [Cucumis sativus])

HSP 1 Score: 113 bits (282), Expect = 7.93e-31
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYKATALLCCLDLASMSCKTSLGVK-ERA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQY+ATALLCCLDLASMSCKTSLG + E A
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 Y*LLVCLFCRIV 71
              +CL   +V
Sbjct: 61 SCWFICLVASLV 72

The following BLAST results are available for this feature:
BLAST of Chy6G119340 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G119340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCD71.1e-2180.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G259710 PE=4 SV=1[more]
BLAST of Chy6G119340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57721.17.93e-3180.56hypothetical protein Csa_009912 [Cucumis sativus][more]
BLAST of Chy6G119340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G119340.1Chy6G119340.1mRNA