Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAGTTCTCTTTTTCCCATTATTTTATCATTATTATAAATGAATATATATAATGAAATCTATTTTACACAAGCAAAGAAACATATACTTCTCTTTAAGAGACATGGGAGCTAAGTTGGTAAGAAAACGATAGAGGTTGTTTGGAGAGGTGATATGAGCACAACAACCAATTTGGGGCGATGGTAAAATATGAAAATGGTGGAAATGAAATAAAATGCCTTTGGTGTTAAAAATTGAGTCCAAAATGTTTAATTAAAACAAACATGAGTTTTGGTTTACATTACACTGTAAACAGATTACATTATGGATATCCAAACACCTCCATAGTTTCATTTTGAATTTTGTTAAATCACTAACTCACTAATTGATGTAAAAGAGCTAATGAACGAAAGCTAATTTAATATTACACTACAAGAAATTGGGGATCTCTCAACGTATCATGTCATCGAGATATTACAAAAAAGCAGTAGGACTAGTTTTCCTGAAGACTAAATGGTCGTTGGAGATGTGGTTGAAAAAACCACATCGAGAGAAGATGCAAGGCGTCAAGAATGGATCATTCCCGATGCACCATTAATACGGTGTTGGGAGTTTTGAACTCCTGACACATTTCATTTATGCATCGGGAACGTATCATTCTAGACGATGCAATCGTGTCGGGAATGGTCCCAACGCCCAAAGCATAAGTGAAACTGTTGGGAATTGAGGAGCTTCAACTCCCGACGACATGCGTTGAAAATTGTTACATTTTTAATTTTTTTTCCAATTATTATTTTATTTTATTTTTTTAGGTGTAACTATTTCATTTTCAGTTTCCATCAATAAAATAGTTGAACAAAATGTTATGAGTTAATTAATAACTAAATTAACATACAAAGTTCCAACTACAAAATTGGAACATATATTTCATAACAAACATCGAACACATGTTTCATAACAATGTGCTTTTGAAAGAATAAATATATATAAAAAAAGACGTCGATCATTTAACAAAAATTCCCCCCTAGGATTTCAGGTAAAATGGCTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTCCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATCATAAACAACCCATGA
mRNA sequence
ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTCCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATCATAAACAACCCATGA
Coding sequence (CDS)
ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTCCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATCATAAACAACCCATGA
Protein sequence
MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPKVYKPTSADFPWGGGYVRRPPIINNP*
Homology
BLAST of Chy6G113730.1 vs. ExPASy TrEMBL
Match:
A0A0A0L8B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 7.2e-38
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0
Query: 5 MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPK 64
MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAV Y+KGEKAVVVPK
Sbjct: 1 MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60
Query: 65 VYKPTSADFPWGGGYVRRPPIINNP 90
VYKPTSADFPWGGGYVRRPPI+NNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85
BLAST of Chy6G113730.1 vs. ExPASy TrEMBL
Match:
A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 9.1e-33
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0
Query: 5 MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPK 64
MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM VEYKKGEKAVVVPK
Sbjct: 1 MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60
Query: 65 VYKPTSADFPWGGGYVRRPPIINNP 90
V +PTS D PWGGGYV RPPI+N+P
Sbjct: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85
BLAST of Chy6G113730.1 vs. ExPASy TrEMBL
Match:
A0A0A0L653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)
HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 0
Query: 7 SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVEYKKGE-KAVVVP 66
+SP +I L+LKLLFF+ LL ++T+S TNN+ PL HKP IRK+ V+ K + KA VVP
Sbjct: 2 ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61
Query: 67 KVYKPTSADFPWGGGYVRRPPIINNP 90
+V KPTS DFPWGGGY+ P ++NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83
BLAST of Chy6G113730.1 vs. NCBI nr
Match:
KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])
HSP 1 Score: 172 bits (436), Expect = 6.53e-54
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0
Query: 1 MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAV 60
MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAV Y+KGEKAV
Sbjct: 1 MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAV 60
Query: 61 VVPKVYKPTSADFPWGGGYVRRPPIINNP 89
VVPKVYKPTSADFPWGGGYVRRPPI+NNP
Sbjct: 61 VVPKVYKPTSADFPWGGGYVRRPPILNNP 89
BLAST of Chy6G113730.1 vs. NCBI nr
Match:
KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 149 bits (376), Expect = 8.27e-45
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0
Query: 5 MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPK 64
MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM VEYKKGEKAVVVPK
Sbjct: 1 MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60
Query: 65 VYKPTSADFPWGGGYVRRPPIINNP 89
V +PTS D PWGGGYV RPPI+N+P
Sbjct: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85
BLAST of Chy6G113730.1 vs. NCBI nr
Match:
KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])
HSP 1 Score: 87.4 bits (215), Expect = 3.00e-20
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 0
Query: 1 MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVEYKKGE- 60
M KMAS P +I L+LKLLFF+ LL ++T+S TNN+ PL HKP IRK+ V+ K +
Sbjct: 1 MPQKMAS-PWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDG 60
Query: 61 KAVVVPKVYKPTSADFPWGGGYVRRPPIINNP 89
KA VVP+V KPTS DFPWGGGY+ P ++NP
Sbjct: 61 KAGVVPRVIKPTSEDFPWGGGYIH--PHLSNP 87
BLAST of Chy6G113730.1 vs. NCBI nr
Match:
KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 63.5 bits (153), Expect = 6.34e-11
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 0
Query: 11 KISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPKVYKPTS 70
+ISL+L+LLFFA LL +T SA N+ LLH P KMA+EY + K KPT+
Sbjct: 8 RISLLLRLLFFALLL--VASTASAANSKALLHNPRTPKMAMEYGQVGKGTSK----KPTA 67
Query: 71 ADFPWGGGYVRRPPIINN 88
D PWGGGYV PPI++N
Sbjct: 68 DDVPWGGGYV--PPILSN 77
BLAST of Chy6G113730.1 vs. NCBI nr
Match:
KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 53.5 bits (127), Expect = 4.52e-07
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = 0
Query: 12 ISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPKVYKPTSA 71
IS +LKLL LL IA + ISA +N P IRKM +EYK KAVVV K + SA
Sbjct: 7 ISFVLKLLVCFALLLIA-SPISAMDNTPR-----IRKMGMEYKLVGKAVVVAKPVRQLSA 66
Query: 72 DFPWGGGY 79
D PWGGGY
Sbjct: 67 DSPWGGGY 68
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L8B2 | 7.2e-38 | 96.47 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1 | [more] |
A0A5D3DJ60 | 9.1e-33 | 87.06 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0L653 | 4.3e-14 | 55.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAE8650427.1 | 6.53e-54 | 96.63 | hypothetical protein Csa_010020 [Cucumis sativus] | [more] |
KAA0067663.1 | 8.27e-45 | 87.06 | hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... | [more] |
KAE8650426.1 | 3.00e-20 | 56.52 | hypothetical protein Csa_009889 [Cucumis sativus] | [more] |
KAG7014832.1 | 6.34e-11 | 51.28 | hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
KAG6600177.1 | 4.52e-07 | 54.41 | hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Chy6G113730.1.exon2 | Chy6G113730.1.exon2 | exon |
Chy6G113730.1.exon1 | Chy6G113730.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Chy6G113730.1.cds2 | Chy6G113730.1.cds2 | CDS |
Chy6G113730.1.cds1 | Chy6G113730.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Chy6G113730.1 | Chy6G113730.1-protein | polypeptide |