Chy6G113730.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy6G113730.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 6087270 .. 6088554 (-)
Sequence length270
RNA-Seq ExpressionChy6G113730.1
SyntenyChy6G113730.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAGTTCTCTTTTTCCCATTATTTTATCATTATTATAAATGAATATATATAATGAAATCTATTTTACACAAGCAAAGAAACATATACTTCTCTTTAAGAGACATGGGAGCTAAGTTGGTAAGAAAACGATAGAGGTTGTTTGGAGAGGTGATATGAGCACAACAACCAATTTGGGGCGATGGTAAAATATGAAAATGGTGGAAATGAAATAAAATGCCTTTGGTGTTAAAAATTGAGTCCAAAATGTTTAATTAAAACAAACATGAGTTTTGGTTTACATTACACTGTAAACAGATTACATTATGGATATCCAAACACCTCCATAGTTTCATTTTGAATTTTGTTAAATCACTAACTCACTAATTGATGTAAAAGAGCTAATGAACGAAAGCTAATTTAATATTACACTACAAGAAATTGGGGATCTCTCAACGTATCATGTCATCGAGATATTACAAAAAAGCAGTAGGACTAGTTTTCCTGAAGACTAAATGGTCGTTGGAGATGTGGTTGAAAAAACCACATCGAGAGAAGATGCAAGGCGTCAAGAATGGATCATTCCCGATGCACCATTAATACGGTGTTGGGAGTTTTGAACTCCTGACACATTTCATTTATGCATCGGGAACGTATCATTCTAGACGATGCAATCGTGTCGGGAATGGTCCCAACGCCCAAAGCATAAGTGAAACTGTTGGGAATTGAGGAGCTTCAACTCCCGACGACATGCGTTGAAAATTGTTACATTTTTAATTTTTTTTCCAATTATTATTTTATTTTATTTTTTTAGGTGTAACTATTTCATTTTCAGTTTCCATCAATAAAATAGTTGAACAAAATGTTATGAGTTAATTAATAACTAAATTAACATACAAAGTTCCAACTACAAAATTGGAACATATATTTCATAACAAACATCGAACACATGTTTCATAACAATGTGCTTTTGAAAGAATAAATATATATAAAAAAAGACGTCGATCATTTAACAAAAATTCCCCCCTAGGATTTCAGGTAAAATGGCTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTCCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATCATAAACAACCCATGA

mRNA sequence

ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTCCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATCATAAACAACCCATGA

Coding sequence (CDS)

ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGAGTACAAAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTCCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATCATAAACAACCCATGA

Protein sequence

MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPKVYKPTSADFPWGGGYVRRPPIINNP*
Homology
BLAST of Chy6G113730.1 vs. ExPASy TrEMBL
Match: A0A0A0L8B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.2e-38
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPK 64
          MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAV Y+KGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPIINNP 90
          VYKPTSADFPWGGGYVRRPPI+NNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

BLAST of Chy6G113730.1 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.1e-33
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPK 64
          MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM VEYKKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPIINNP 90
          V +PTS D PWGGGYV RPPI+N+P
Sbjct: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of Chy6G113730.1 vs. ExPASy TrEMBL
Match: A0A0A0L653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 7  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVEYKKGE-KAVVVP 66
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V+ K  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 67 KVYKPTSADFPWGGGYVRRPPIINNP 90
          +V KPTS DFPWGGGY+   P ++NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

BLAST of Chy6G113730.1 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 172 bits (436), Expect = 6.53e-54
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1  MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAV 60
          MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAV Y+KGEKAV
Sbjct: 1  MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAV 60

Query: 61 VVPKVYKPTSADFPWGGGYVRRPPIINNP 89
          VVPKVYKPTSADFPWGGGYVRRPPI+NNP
Sbjct: 61 VVPKVYKPTSADFPWGGGYVRRPPILNNP 89

BLAST of Chy6G113730.1 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 8.27e-45
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPK 64
          MASSPMKISLMLKLLFFA LLFIA TT+SATNNIPLLHKPPIRKM VEYKKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPIINNP 89
          V +PTS D PWGGGYV RPPI+N+P
Sbjct: 61 VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of Chy6G113730.1 vs. NCBI nr
Match: KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 3.00e-20
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 0

Query: 1  MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVEYKKGE- 60
          M  KMAS P +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V+ K  + 
Sbjct: 1  MPQKMAS-PWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDG 60

Query: 61 KAVVVPKVYKPTSADFPWGGGYVRRPPIINNP 89
          KA VVP+V KPTS DFPWGGGY+   P ++NP
Sbjct: 61 KAGVVPRVIKPTSEDFPWGGGYIH--PHLSNP 87

BLAST of Chy6G113730.1 vs. NCBI nr
Match: KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.5 bits (153), Expect = 6.34e-11
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 11 KISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPKVYKPTS 70
          +ISL+L+LLFFA LL    +T SA N+  LLH P   KMA+EY +  K        KPT+
Sbjct: 8  RISLLLRLLFFALLL--VASTASAANSKALLHNPRTPKMAMEYGQVGKGTSK----KPTA 67

Query: 71 ADFPWGGGYVRRPPIINN 88
           D PWGGGYV  PPI++N
Sbjct: 68 DDVPWGGGYV--PPILSN 77

BLAST of Chy6G113730.1 vs. NCBI nr
Match: KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.5 bits (127), Expect = 4.52e-07
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 12 ISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVEYKKGEKAVVVPKVYKPTSA 71
          IS +LKLL    LL IA + ISA +N P      IRKM +EYK   KAVVV K  +  SA
Sbjct: 7  ISFVLKLLVCFALLLIA-SPISAMDNTPR-----IRKMGMEYKLVGKAVVVAKPVRQLSA 66

Query: 72 DFPWGGGY 79
          D PWGGGY
Sbjct: 67 DSPWGGGY 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8B27.2e-3896.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
A0A5D3DJ609.1e-3387.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L6534.3e-1455.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8650427.16.53e-5496.63hypothetical protein Csa_010020 [Cucumis sativus][more]
KAA0067663.18.27e-4587.06hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
KAE8650426.13.00e-2056.52hypothetical protein Csa_009889 [Cucumis sativus][more]
KAG7014832.16.34e-1151.28hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6600177.14.52e-0754.41hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy6G113730Chy6G113730gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy6G113730.1.exon2Chy6G113730.1.exon2exon
Chy6G113730.1.exon1Chy6G113730.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy6G113730.1.cds2Chy6G113730.1.cds2CDS
Chy6G113730.1.cds1Chy6G113730.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy6G113730.1Chy6G113730.1-proteinpolypeptide