Chy5G090590.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy5G090590.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH05: 119088 .. 119579 (-)
Sequence length366
RNA-Seq ExpressionChy5G090590.1
SyntenyChy5G090590.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCCAGAAGCAGGAAGGGGGGAAAATTACCAGAGAGAAAGTCAATCGGAAGCATAGTCGTAAGAAGAGAGATCGGAGTCAGAGGAATAGTAGTAATAGTAGAAAGAACCAGGTGGAGGAACACAGAATAGGGTCCAAAGAGAGAGGGCAAGGCGAGAAAGCTGTTGAAGAGGGAAAGCGAAGAGAAGGTAAAGAAGTTGGTGGCTGGTGAGGGGATCAGGAAAGCGAGCAATGGACTGCGAAGCATCCGCCGATAAATGAGCGACCGATAACACTATAAAGCTGCTAAATACCATGGCTTAGTCAGATTAATATTCCTGATTTACTGATTAGGCTCTCCGTTCTGGAAGAAGTGTCTGTTTTTCGGCTTCCATTTGACTTTGGCCTTCCCCTTTTTGATCCCTTCGCTGCGTTTTCCTTTCCTAATTTGGTGCCCAAATCTGTTGTTGTGGCGACGGACTACTCCACAAGCGGGATTTCGGTGTAG

mRNA sequence

ATGAAAACCCAGAAGCAGGAAGGGGGGAAAATTACCAGAGAGAAAGTCAATCGGAAGCATAGTCGTAAGAAGAGAGATCGGAGTCAGAGGAATAGTAGTAATAGTAGAAAGAACCAGGTGGAGGAACACAGAATAGGGTCCAAAGAGAGAGGGCAAGGCGAGAAAGCTGTTGAAGAGGGAAAGCGAAGAGAAGGTAAAGAAGTTGGTGGCTGGCTCTCCGTTCTGGAAGAAGTGTCTGTTTTTCGGCTTCCATTTGACTTTGGCCTTCCCCTTTTTGATCCCTTCGCTGCGTTTTCCTTTCCTAATTTGGTGCCCAAATCTGTTGTTGTGGCGACGGACTACTCCACAAGCGGGATTTCGGTGTAG

Coding sequence (CDS)

ATGAAAACCCAGAAGCAGGAAGGGGGGAAAATTACCAGAGAGAAAGTCAATCGGAAGCATAGTCGTAAGAAGAGAGATCGGAGTCAGAGGAATAGTAGTAATAGTAGAAAGAACCAGGTGGAGGAACACAGAATAGGGTCCAAAGAGAGAGGGCAAGGCGAGAAAGCTGTTGAAGAGGGAAAGCGAAGAGAAGGTAAAGAAGTTGGTGGCTGGCTCTCCGTTCTGGAAGAAGTGTCTGTTTTTCGGCTTCCATTTGACTTTGGCCTTCCCCTTTTTGATCCCTTCGCTGCGTTTTCCTTTCCTAATTTGGTGCCCAAATCTGTTGTTGTGGCGACGGACTACTCCACAAGCGGGATTTCGGTGTAG

Protein sequence

MKTQKQEGGKITREKVNRKHSRKKRDRSQRNSSNSRKNQVEEHRIGSKERGQGEKAVEEGKRREGKEVGGWLSVLEEVSVFRLPFDFGLPLFDPFAAFSFPNLVPKSVVVATDYSTSGISV*
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy5G090590Chy5G090590gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy5G090590.1.exon2Chy5G090590.1.exon2exon
Chy5G090590.1.exon1Chy5G090590.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy5G090590.1.cds2Chy5G090590.1.cds2CDS
Chy5G090590.1.cds1Chy5G090590.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy5G090590.1Chy5G090590.1-proteinpolypeptide