![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Chy4G078830.1 (mRNA) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTATATTTTAACAGGGAAAAAGTGACGATACCCTCAGACAAATCATGCATATTTCTAGACGGAAGTGGGCTTAAAGTGACTGAAGTTCATTGGAATGACCATGAAACAACAGCTGCTAGTCCCACCTTTACTTCTTCTGCACAAAACCTTGTAGTACAAGGCATCACTTTTAGGGTATATACTTATAACTGTTTAATTTCCCTATCTTTCAAATAATGTATATATTTTCTTTTTGTTTTATGTCTATTATCTGTGATTCAAAATTGGCAGAATACTTATAATGCACGTGGAAGTGTGATGAGACGTGAAGATATAAAACCAGCACTTGCAGCTCTAATCCAAGGAAAAAAGTGATATTTCATAAATGTGGTTTCATTGGTTTGCAAGATACTTTGTGGGATGGTCCTGGCCGTCATCTATTCACCCAGTGCTACATTGAAGGTGTCATTGATGTCATTTCTGGTTTTGGTCAGTCTATCTATAAGGTTAACTTCTAAATTATAAGCTTACATGTGTGTTTGTATATATGTGTGAGAGCTTGGAAGTCAAATTGAAGTGTTGAGTTTTTCTTTTTTGTTTGTTTGTTTGTTGTGTTTAACGCAGGAATGTGTGATAAACGTACCCGTCAATGCATATGCTCCATTACTAAATGAAGGTTTCATAACAGCTCAAGGAAAGGAGAATCCAAATGAAAGCAGTGGATTTGTATTCCTTAGATGCATAGTGCAGGGAAGTGGGAATGTTTTTCTTGGAGGGGCTTATAGACCTTTCTCCACCGTCATTTTCCATCTCTGTTTTCTACCTTCTTGCATTAACCCTGCTGGTTGGAATTCTTGGCTACAAGTTGGGCATGAGTAA ATGTTATATTTTAACAGGGAAAAAGTGACGATACCCTCAGACAAATCATGCATATTTCTAGACGGAAGTGGGCTTAAAGTGACTGAAGTTCATTGGAATGACCATGAAACAACAGCTGCTAGTCCCACCTTTACTTCTTCTGCACAAAACCTTGTAGTACAAGGCATCACTTTTAGGATACTTTGTGGGATGGTCCTGGCCGTCATCTATTCACCCAGTGCTACATTGAAGGTGTCATTGATGTCATTTCTGGTTTTGGAATGTGTGATAAACGTACCCGTCAATGCATATGCTCCATTACTAAATGAAGGTTTCATAACAGCTCAAGGAAAGGAGAATCCAAATGAAAGCAGTGGATTTGTATTCCTTAGATGCATAGTGCAGGGAAGTGGGAATGTTTTTCTTGGAGGGGCTTATAGACCTTTCTCCACCGTCATTTTCCATCTCTGTTTTCTACCTTCTTGCATTAACCCTGCTGGTTGGAATTCTTGGCTACAAGTTGGGCATGAGTAA ATGTTATATTTTAACAGGGAAAAAGTGACGATACCCTCAGACAAATCATGCATATTTCTAGACGGAAGTGGGCTTAAAGTGACTGAAGTTCATTGGAATGACCATGAAACAACAGCTGCTAGTCCCACCTTTACTTCTTCTGCACAAAACCTTGTAGTACAAGGCATCACTTTTAGGATACTTTGTGGGATGGTCCTGGCCGTCATCTATTCACCCAGTGCTACATTGAAGGTGTCATTGATGTCATTTCTGGTTTTGGAATGTGTGATAAACGTACCCGTCAATGCATATGCTCCATTACTAAATGAAGGTTTCATAACAGCTCAAGGAAAGGAGAATCCAAATGAAAGCAGTGGATTTGTATTCCTTAGATGCATAGTGCAGGGAAGTGGGAATGTTTTTCTTGGAGGGGCTTATAGACCTTTCTCCACCGTCATTTTCCATCTCTGTTTTCTACCTTCTTGCATTAACCCTGCTGGTTGGAATTCTTGGCTACAAGTTGGGCATGAGTAA MLYFNREKVTIPSDKSCIFLDGSGLKVTEVHWNDHETTAASPTFTSSAQNLVVQGITFRILCGMVLAVIYSPSATLKVSLMSFLVLECVINVPVNAYAPLLNEGFITAQGKENPNESSGFVFLRCIVQGSGNVFLGGAYRPFSTVIFHLCFLPSCINPAGWNSWLQVGHE* Homology
BLAST of Chy4G078830.1 vs. ExPASy Swiss-Prot
Match: Q4PSN0 (Probable pectinesterase 29 OS=Arabidopsis thaliana OX=3702 GN=PME29 PE=2 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 8.3e-24 Identity = 72/211 (34.12%), Postives = 102/211 (48.34%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy Swiss-Prot
Match: Q3E9D3 (Probable pectinesterase 55 OS=Arabidopsis thaliana OX=3702 GN=PME55 PE=2 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 5.9e-22 Identity = 70/211 (33.18%), Postives = 100/211 (47.39%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy Swiss-Prot
Match: O64479 (Putative pectinesterase 10 OS=Arabidopsis thaliana OX=3702 GN=PME10 PE=2 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 5.0e-21 Identity = 65/206 (31.55%), Postives = 96/206 (46.60%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy Swiss-Prot
Match: Q4PSQ5 (Probable pectinesterase 66 OS=Arabidopsis thaliana OX=3702 GN=PME66 PE=2 SV=2) HSP 1 Score: 99.0 bits (245), Expect = 5.6e-20 Identity = 64/208 (30.77%), Postives = 93/208 (44.71%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy Swiss-Prot
Match: O04953 (Putative pectinesterase 52 OS=Arabidopsis thaliana OX=3702 GN=PME52 PE=2 SV=2) HSP 1 Score: 85.1 bits (209), Expect = 8.3e-16 Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy TrEMBL
Match: A0A0A0LB12 (Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_3G536660 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64 Identity = 134/209 (64.11%), Postives = 142/209 (67.94%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy TrEMBL
Match: A0A5D3DA76 (Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00550 PE=4 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 6.8e-53 Identity = 115/198 (58.08%), Postives = 132/198 (66.67%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy TrEMBL
Match: A0A1S4DWQ1 (Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103490078 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 4.1e-50 Identity = 114/211 (54.03%), Postives = 126/211 (59.72%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy TrEMBL
Match: A0A6J1DWQ8 (Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111023848 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.7e-43 Identity = 101/209 (48.33%), Postives = 125/209 (59.81%), Query Frame = 0
BLAST of Chy4G078830.1 vs. ExPASy TrEMBL
Match: B9RNC0 (Pectinesterase OS=Ricinus communis OX=3988 GN=RCOM_1346520 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 3.7e-27 Identity = 80/214 (37.38%), Postives = 105/214 (49.07%), Query Frame = 0
BLAST of Chy4G078830.1 vs. NCBI nr
Match: XP_011652807.1 (probable pectinesterase 55 [Cucumis sativus]) HSP 1 Score: 251 bits (641), Expect = 8.60e-81 Identity = 134/209 (64.11%), Postives = 142/209 (67.94%), Query Frame = 0
BLAST of Chy4G078830.1 vs. NCBI nr
Match: KAE8650757.1 (hypothetical protein Csa_017626 [Cucumis sativus]) HSP 1 Score: 251 bits (641), Expect = 9.88e-80 Identity = 134/209 (64.11%), Postives = 142/209 (67.94%), Query Frame = 0
BLAST of Chy4G078830.1 vs. NCBI nr
Match: KAA0038126.1 (putative pectinesterase 55 [Cucumis melo var. makuwa] >TYK20481.1 putative pectinesterase 55 [Cucumis melo var. makuwa]) HSP 1 Score: 213 bits (542), Expect = 2.36e-66 Identity = 116/198 (58.59%), Postives = 130/198 (65.66%), Query Frame = 0
BLAST of Chy4G078830.1 vs. NCBI nr
Match: XP_016900403.1 (PREDICTED: probable pectinesterase 55 [Cucumis melo]) HSP 1 Score: 204 bits (519), Expect = 1.18e-61 Identity = 114/211 (54.03%), Postives = 126/211 (59.72%), Query Frame = 0
BLAST of Chy4G078830.1 vs. NCBI nr
Match: XP_038904330.1 (putative pectinesterase 52 [Benincasa hispida]) HSP 1 Score: 203 bits (517), Expect = 2.50e-61 Identity = 111/214 (51.87%), Postives = 128/214 (59.81%), Query Frame = 0
BLAST of Chy4G078830.1 vs. TAIR 10
Match: AT3G24130.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 111.7 bits (278), Expect = 5.9e-25 Identity = 72/211 (34.12%), Postives = 102/211 (48.34%), Query Frame = 0
BLAST of Chy4G078830.1 vs. TAIR 10
Match: AT5G18990.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 105.5 bits (262), Expect = 4.2e-23 Identity = 70/211 (33.18%), Postives = 100/211 (47.39%), Query Frame = 0
BLAST of Chy4G078830.1 vs. TAIR 10
Match: AT2G19150.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 102.4 bits (254), Expect = 3.6e-22 Identity = 65/206 (31.55%), Postives = 96/206 (46.60%), Query Frame = 0
BLAST of Chy4G078830.1 vs. TAIR 10
Match: AT2G47280.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 99.0 bits (245), Expect = 4.0e-21 Identity = 64/208 (30.77%), Postives = 93/208 (44.71%), Query Frame = 0
BLAST of Chy4G078830.1 vs. TAIR 10
Match: AT5G26810.1 (Pectin lyase-like superfamily protein ) HSP 1 Score: 85.1 bits (209), Expect = 5.9e-17 Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|