Chy4G072320.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy4G072320.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH04: 5064669 .. 5065134 (+)
Sequence length150
RNA-Seq ExpressionChy4G072320.1
SyntenyChy4G072320.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATTGTTTCCTTAGAAAACGAACCTCCTCCTCCTTCAAGCTCTTTATGTTTGTGCTTTATGAGCCACGAGCTTTGATCCATCAAGCATTTTCAGCCTTGTGCATAGACAGCGATTTGAACAAAAGCCGCTTTGTGTAAAAGATTGGATTGTTTGGCGTGTGATAGCAATGGACAGAAGAGTTCAGATTCAGCTTCTGGACGCCAAGTTTTCCAGGTACGTTTGATTTTCTGTAGAGATTTTTTCACAGATGCCCCTTTCACGGGCGCCTTCACATCTATGGGAGGCTGGTTATTAGCCCTTAAGACGCCATGTAAAGGTCATCTGTACAAAAATCTTTGATGTCGTTTTTTCAACTCGAGATTTATGGGCGGCAGTAGATTTCTCCAGCTCTAACTTTCTTTTATTACTTTAACAGATTTCACTGGTTTTCCAGTTGCAACCAGCATAACTTTTCAGATGA

mRNA sequence

ATGGCCATTGTTTCCTTAGAAAACGAACCTCCTCCTCCTTCAAGCTCTTTATGTTTCAATGGACAGAAGAGTTCAGATTCAGCTTCTGGACGCCAAGTTTTCCAGATTTCACTGGTTTTCCAGTTGCAACCAGCATAACTTTTCAGATGA

Coding sequence (CDS)

ATGGCCATTGTTTCCTTAGAAAACGAACCTCCTCCTCCTTCAAGCTCTTTATGTTTCAATGGACAGAAGAGTTCAGATTCAGCTTCTGGACGCCAAGTTTTCCAGATTTCACTGGTTTTCCAGTTGCAACCAGCATAACTTTTCAGATGA

Protein sequence

MAIVSLENEPPPPSSSLCFNGQKSSDSASGRQVFQISLVFQLQPA*LFR*
Homology
[Close]
BLAST of Chy4G072320.1 vs. ExPASy TrEMBL
Match: A0A0A0LG34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855970 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-16
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 1  MAIVSLENEPPPPSSSLCFNGQKSSDSASGRQVFQISLVFQLQPA*LFR 50
          MAIVSLENEPPPPSSSLCFNGQKSSDSA GRQVFQISLVFQLQPA LFR
Sbjct: 1  MAIVSLENEPPPPSSSLCFNGQKSSDSACGRQVFQISLVFQLQPAELFR 49

[Close]
BLAST of Chy4G072320.1 vs. NCBI nr
Match: KGN59954.1 (hypothetical protein Csa_002075 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.24e-23
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 1  MAIVSLENEPPPPSSSLCFNGQKSSDSASGRQVFQISLVFQLQPA*LFR 49
          MAIVSLENEPPPPSSSLCFNGQKSSDSA GRQVFQISLVFQLQPA LFR
Sbjct: 1  MAIVSLENEPPPPSSSLCFNGQKSSDSACGRQVFQISLVFQLQPAELFR 49

The following BLAST results are available for this feature:
BLAST of Chy4G072320.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G072320.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG341.9e-1695.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855970 PE=4 SV=1[more]
BLAST of Chy4G072320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59954.13.24e-2395.92hypothetical protein Csa_002075 [Cucumis sativus][more]
BLAST of Chy4G072320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy4G072320Chy4G072320gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy4G072320.1.exon1Chy4G072320.1.exon1exon
Chy4G072320.1.exon2Chy4G072320.1.exon2exon
Chy4G072320.1.exon3Chy4G072320.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy4G072320.1.cds1Chy4G072320.1.cds1CDS
Chy4G072320.1.cds2Chy4G072320.1.cds2CDS
Chy4G072320.1.cds3Chy4G072320.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy4G072320.1Chy4G072320.1-proteinpolypeptide