Chy4G072320 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G072320
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 5064669 .. 5065134 (+)
RNA-Seq Expression	Chy4G072320
Synteny	Chy4G072320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTGTTTCCTTAGAAAACGAACCTCCTCCTCCTTCAAGCTCTTTATGTTTGTGCTTTATGAGCCACGAGCTTTGATCCATCAAGCATTTTCAGCCTTGTGCATAGACAGCGATTTGAACAAAAGCCGCTTTGTGTAAAAGATTGGATTGTTTGGCGTGTGATAGCAATGGACAGAAGAGTTCAGATTCAGCTTCTGGACGCCAAGTTTTCCAGGTACGTTTGATTTTCTGTAGAGATTTTTTCACAGATGCCCCTTTCACGGGCGCCTTCACATCTATGGGAGGCTGGTTATTAGCCCTTAAGACGCCATGTAAAGGTCATCTGTACAAAAATCTTTGATGTCGTTTTTTCAACTCGAGATTTATGGGCGGCAGTAGATTTCTCCAGCTCTAACTTTCTTTTATTACTTTAACAGATTTCACTGGTTTTCCAGTTGCAACCAGCATAACTTTTCAGATGA

mRNA sequence

ATGGCCATTGTTTCCTTAGAAAACGAACCTCCTCCTCCTTCAAGCTCTTTATGTTTCAATGGACAGAAGAGTTCAGATTCAGCTTCTGGACGCCAAGTTTTCCAGATTTCACTGGTTTTCCAGTTGCAACCAGCATAACTTTTCAGATGA

Coding sequence (CDS)

ATGGCCATTGTTTCCTTAGAAAACGAACCTCCTCCTCCTTCAAGCTCTTTATGTTTCAATGGACAGAAGAGTTCAGATTCAGCTTCTGGACGCCAAGTTTTCCAGATTTCACTGGTTTTCCAGTTGCAACCAGCATAACTTTTCAGATGA

Protein sequence

MAIVSLENEPPPPSSSLCFNGQKSSDSASGRQVFQISLVFQLQPA*LFR*

Homology

[Close]

BLAST of Chy4G072320 vs. ExPASy TrEMBL
Match: A0A0A0LG34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855970 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-16
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MAIVSLENEPPPPSSSLCFNGQKSSDSASGRQVFQISLVFQLQPA*LFR 50
          MAIVSLENEPPPPSSSLCFNGQKSSDSA GRQVFQISLVFQLQPA LFR
Sbjct: 1  MAIVSLENEPPPPSSSLCFNGQKSSDSACGRQVFQISLVFQLQPAELFR 49

[Close]

BLAST of Chy4G072320 vs. NCBI nr
Match: KGN59954.1 (hypothetical protein Csa_002075 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.24e-23
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MAIVSLENEPPPPSSSLCFNGQKSSDSASGRQVFQISLVFQLQPA*LFR 49
          MAIVSLENEPPPPSSSLCFNGQKSSDSA GRQVFQISLVFQLQPA LFR
Sbjct: 1  MAIVSLENEPPPPSSSLCFNGQKSSDSACGRQVFQISLVFQLQPAELFR 49

The following BLAST results are available for this feature:

BLAST of Chy4G072320 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G072320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG34	1.9e-16	95.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855970 PE=4 SV=1	[more]

BLAST of Chy4G072320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59954.1	3.24e-23	95.92	hypothetical protein Csa_002075 [Cucumis sativus]	[more]

BLAST of Chy4G072320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G072320.1	Chy4G072320.1	mRNA