Chy3G056860.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy3G056860.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Methyltransferase
Location	chrH03: 9590975 .. 9591453 (-)
Sequence length	279
RNA-Seq Expression	Chy3G056860.1
Synteny	Chy3G056860.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTACCTGATTACAGAAAGGGAGAGGCCATACCTGTGTATGGAATGGAGGAAGACGTTCAAACTTATTATAAGCCCCTCACATCATGTTTGATTGAACCAACAAACAAAAGATGGATTGCAGCAGTCCAGAACATATCATGTAAGTTGGGTTCAACTTATTTGGAAGATGTTCATGGTTAGTGTTTCGTCTCTACTAATGAAAACAGTCCATTCTTCTATGTTGAATGCAGTATATTTTCTTTCATCACCGATTGATTTATTCGTTCAATTGTAGTTTTCCTGCCCTCAAGTTTTGTCCGTGCGTAGCTTGATTGGCAAAACATTCACAGATTCATTCATCATTGTTCAAATTAATTAATCCTTTTTGCTTTACAGGGGTGACGGTTGAAGACTTGCAAGATGAAAAGACTGAATGGAGTTCAATTGTGAAAAATTATCGGTCTTTTGCTTACGTGATCAGCCAAAGAGACTGA

mRNA sequence

ATGATTCTACCTGATTACAGAAAGGGAGAGGCCATACCTGTGTATGGAATGGAGGAAGACGTTCAAACTTATTATAAGCCCCTCACATCATGTTTGATTGAACCAACAAACAAAAGATGGATTGCAGCAGTCCAGAACATATCATGTAAGTTGGGTTCAACTTATTTGGAAGATGTTCATGGGGTGACGGTTGAAGACTTGCAAGATGAAAAGACTGAATGGAGTTCAATTGTGAAAAATTATCGGTCTTTTGCTTACGTGATCAGCCAAAGAGACTGA

Coding sequence (CDS)

ATGATTCTACCTGATTACAGAAAGGGAGAGGCCATACCTGTGTATGGAATGGAGGAAGACGTTCAAACTTATTATAAGCCCCTCACATCATGTTTGATTGAACCAACAAACAAAAGATGGATTGCAGCAGTCCAGAACATATCATGTAAGTTGGGTTCAACTTATTTGGAAGATGTTCATGGGGTGACGGTTGAAGACTTGCAAGATGAAAAGACTGAATGGAGTTCAATTGTGAAAAATTATCGGTCTTTTGCTTACGTGATCAGCCAAAGAGACTGA

Protein sequence

MILPDYRKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISCKLGSTYLEDVHGVTVEDLQDEKTEWSSIVKNYRSFAYVISQRD*

Homology

[Close]

BLAST of Chy3G056860.1 vs. ExPASy Swiss-Prot
Match: Q8GYW9 (Probable methyltransferase PMT4 OS=Arabidopsis thaliana OX=3702 GN=At1g13860 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISCKLGSTYLE-DVHGVTVE 66
           R   +IPV   ++D   YY PL  C+    +KRWI  +QN S   G++  E ++HG+  E
Sbjct: 356 RSQASIPVC-KDDDSVPYYHPLVPCISGTKSKRWI-PIQNRSRASGTSLSELEIHGIKPE 415

Query: 67  DLQDEKTEWSSIVKNYRS 84
           +  ++   W S +KNY S
Sbjct: 416 EFDEDIQVWRSALKNYWS 431

[Close]

BLAST of Chy3G056860.1 vs. ExPASy TrEMBL
Match: A0A2R6QQT5 (Methyltransferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14098 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-07
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 6   YRKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC-KLGSTYLEDVHGVTV 65
           + K  A+P+    +D Q+YY+PL  C+   T+KRWI  +QN SC  L S    +VHGV  
Sbjct: 371 FGKQNALPLCKEGQDAQSYYQPLVPCISGTTSKRWI-PIQNKSCGSLLSAAELEVHGVQP 430

Query: 66  EDLQDEKTEWSSIVKNYRS 84
            D  D+   W S+++NY S
Sbjct: 431 NDFYDDSQNWKSVLRNYWS 448

[Close]

BLAST of Chy3G056860.1 vs. ExPASy TrEMBL
Match: A0A2I4H850 (Methyltransferase OS=Juglans regia OX=51240 GN=LOC109014361 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC--KLGSTYLEDVHGVTV 66
           RK  AIP+     D+Q+YY+PL SC+   ++KRWI  +QN S   +L S  LE VHGV  
Sbjct: 370 RKQVAIPLCKEGHDIQSYYQPLVSCISGTSSKRWI-PIQNRSAGSQLSSAELE-VHGVLP 429

Query: 67  EDLQDEKTEWSSIVKNYRS 84
           ED  ++   W S +KNY S
Sbjct: 430 EDFFEDLQIWRSALKNYWS 446

[Close]

BLAST of Chy3G056860.1 vs. ExPASy TrEMBL
Match: A0A6P5S1Z6 (Methyltransferase OS=Prunus avium OX=42229 GN=LOC110751315 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.4e-06
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC---KLGSTYLEDVHGVT 66
           RK  AIP+     DV++YYKPL SC+   TNKRW   ++N S    +L S  LE +HGV 
Sbjct: 371 RKQGAIPLCNEGHDVRSYYKPLVSCISGTTNKRW-TPIRNRSSSPHQLNSAELE-IHGVQ 430

Query: 67  VEDLQDEKTEWSSIVKNYRS 84
            +D  ++   W S ++NY S
Sbjct: 431 PDDFFEDLQIWRSALRNYWS 448

[Close]

BLAST of Chy3G056860.1 vs. ExPASy TrEMBL
Match: A0A2I4EGH4 (Methyltransferase OS=Juglans regia OX=51240 GN=LOC108989382 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC--KLGSTYLEDVHGVTV 66
           RK  AIP+     DVQ+YY+PL SC+   ++KRWI  +QN S   +L ++ LE VHGV  
Sbjct: 372 RKQSAIPLCKEGHDVQSYYQPLVSCISGTSSKRWI-PIQNRSAGSQLSASELE-VHGVLP 431

Query: 67  EDLQDEKTEWSSIVKNYRS 84
           ++  ++   W S +KNY S
Sbjct: 432 DNFFEDLRVWRSALKNYWS 448

[Close]

BLAST of Chy3G056860.1 vs. ExPASy TrEMBL
Match: A0A151QX43 (Methyltransferase OS=Cajanus cajan OX=3821 GN=KK1_044089 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-06
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNIS--CKLGSTYLEDVH---G 66
           RK  AIP+   ++D Q+YY PL  C+   ++KRWI A+QN S   +LGS  L+ +H   G
Sbjct: 343 RKKHAIPLCKEDDDAQSYYHPLQQCISGTSSKRWI-AIQNRSSGSELGSAELK-IHGKAG 402

Query: 67  VTVEDLQDEKTEWSSIVKNYRS 84
           V  ED  ++   W S++KNY S
Sbjct: 403 VQPEDFFEDLQFWRSVLKNYWS 422

[Close]

BLAST of Chy3G056860.1 vs. NCBI nr
Match: PSS13488.1 (Methyltransferase [Actinidia chinensis var. chinensis])

HSP 1 Score: 62.8 bits (151), Expect = 5.81e-09
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 6   YRKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC-KLGSTYLEDVHGVTV 65
           + K  A+P+    +D Q+YY+PL  C+   T+KRWI  +QN SC  L S    +VHGV  
Sbjct: 371 FGKQNALPLCKEGQDAQSYYQPLVPCISGTTSKRWIP-IQNKSCGSLLSAAELEVHGVQP 430

Query: 66  EDLQDEKTEWSSIVKNYRS 83
            D  D+   W S+++NY S
Sbjct: 431 NDFYDDSQNWKSVLRNYWS 448

[Close]

BLAST of Chy3G056860.1 vs. NCBI nr
Match: XP_028951590.1 (probable methyltransferase PMT5 [Malus domestica] >XP_028951591.1 probable methyltransferase PMT5 [Malus domestica])

HSP 1 Score: 62.0 bits (149), Expect = 1.08e-08
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC---KLGSTYLEDVHGVT 66
           RK  A+PV     DV++YYKPL SC+   T+KRW A ++N S    +L S  LE VHGV 
Sbjct: 371 RKQGALPVCNEGHDVRSYYKPLVSCISGTTSKRW-APIRNRSSSPHRLSSAELE-VHGVQ 430

Query: 67  VEDLQDEKTEWSSIVKNYRS 83
            ED  ++   W S +KNY S
Sbjct: 431 PEDFFEDLRVWRSALKNYWS 448

[Close]

BLAST of Chy3G056860.1 vs. NCBI nr
Match: XP_038892405.1 (probable methyltransferase PMT5 [Benincasa hispida] >XP_038892406.1 probable methyltransferase PMT5 [Benincasa hispida] >XP_038892407.1 probable methyltransferase PMT5 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 2.03e-08
Identity = 36/78 (46.15%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 8   KGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC--KLGSTYLEDVHGVTVE 67
           K E +PV     D  +YY+PL  C+   T+KRWI  +QN S    L S  LE VHGV +E
Sbjct: 402 KQEVVPVCKEGHDTPSYYQPLVPCISSTTSKRWIP-IQNRSSGSHLNSAELE-VHGVQLE 461

Query: 68  DLQDEKTEWSSIVKNYRS 83
           D  DE   W S +KNY S
Sbjct: 462 DYSDELQIWQSALKNYWS 477

[Close]

BLAST of Chy3G056860.1 vs. NCBI nr
Match: XP_009356400.1 (PREDICTED: probable methyltransferase PMT5 [Pyrus x bretschneideri])

HSP 1 Score: 60.8 bits (146), Expect = 2.76e-08
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC---KLGSTYLEDVHGVT 66
           RK  A+PV     D+++YYKPL SC+   T+KRW A ++N S    +L S  +E VHGV 
Sbjct: 371 RKQGALPVCNEGHDIRSYYKPLVSCISGTTSKRW-APIRNRSSSPHRLSSAEIE-VHGVQ 430

Query: 67  VEDLQDEKTEWSSIVKNYRS 83
            ED  ++   W S +KNY S
Sbjct: 431 PEDFFEDLQVWRSALKNYWS 448

[Close]

BLAST of Chy3G056860.1 vs. NCBI nr
Match: XP_042980398.1 (probable methyltransferase PMT5 isoform X3 [Carya illinoinensis] >KAG2707004.1 hypothetical protein I3760_05G127700 [Carya illinoinensis] >KAG6712885.1 hypothetical protein I3842_05G123400 [Carya illinoinensis])

HSP 1 Score: 60.5 bits (145), Expect = 3.72e-08
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISC--KLGSTYLEDVHGVTV 66
           RK  AIP+     D+Q+YY+PL SC+   ++KRWI  +QN S   +L S  LE VHGV  
Sbjct: 370 RKQGAIPLCKEGHDIQSYYQPLVSCISGTSSKRWIP-IQNRSAGSQLSSAELE-VHGVLP 429

Query: 67  EDLQDEKTEWSSIVKNYRS 83
           ED  ++   W S +KNY S
Sbjct: 430 EDFFEDLQIWRSALKNYWS 446

[Close]

BLAST of Chy3G056860.1 vs. TAIR 10
Match: AT1G13860.2 (QUASIMODO2 LIKE 1 )

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-07
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISCKLGSTYLE-DVHGVTVE 66
           R   +IPV   ++D   YY PL  C+    +KRWI  +QN S   G++  E ++HG+  E
Sbjct: 200 RSQASIPVC-KDDDSVPYYHPLVPCISGTKSKRWI-PIQNRSRASGTSLSELEIHGIKPE 259

Query: 67  DLQDEKTEWSSIVKNYRS 84
           +  ++   W S +KNY S
Sbjct: 260 EFDEDIQVWRSALKNYWS 275

[Close]

BLAST of Chy3G056860.1 vs. TAIR 10
Match: AT1G13860.4 (QUASIMODO2 LIKE 1 )

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-07
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISCKLGSTYLE-DVHGVTVE 66
           R   +IPV   ++D   YY PL  C+    +KRWI  +QN S   G++  E ++HG+  E
Sbjct: 356 RSQASIPVC-KDDDSVPYYHPLVPCISGTKSKRWI-PIQNRSRASGTSLSELEIHGIKPE 415

Query: 67  DLQDEKTEWSSIVKNYRS 84
           +  ++   W S +KNY S
Sbjct: 416 EFDEDIQVWRSALKNYWS 431

[Close]

BLAST of Chy3G056860.1 vs. TAIR 10
Match: AT1G13860.1 (QUASIMODO2 LIKE 1 )

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-07
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISCKLGSTYLE-DVHGVTVE 66
           R   +IPV   ++D   YY PL  C+    +KRWI  +QN S   G++  E ++HG+  E
Sbjct: 356 RSQASIPVC-KDDDSVPYYHPLVPCISGTKSKRWI-PIQNRSRASGTSLSELEIHGIKPE 415

Query: 67  DLQDEKTEWSSIVKNYRS 84
           +  ++   W S +KNY S
Sbjct: 416 EFDEDIQVWRSALKNYWS 431

[Close]

BLAST of Chy3G056860.1 vs. TAIR 10
Match: AT1G13860.3 (QUASIMODO2 LIKE 1 )

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-07
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 7   RKGEAIPVYGMEEDVQTYYKPLTSCLIEPTNKRWIAAVQNISCKLGSTYLE-DVHGVTVE 66
           R   +IPV   ++D   YY PL  C+    +KRWI  +QN S   G++  E ++HG+  E
Sbjct: 356 RSQASIPVC-KDDDSVPYYHPLVPCISGTKSKRWI-PIQNRSRASGTSLSELEIHGIKPE 415

Query: 67  DLQDEKTEWSSIVKNYRS 84
           +  ++   W S +KNY S
Sbjct: 416 EFDEDIQVWRSALKNYWS 431

The following BLAST results are available for this feature:

BLAST of Chy3G056860.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYW9	1.2e-05	35.90	Probable methyltransferase PMT4 OS=Arabidopsis thaliana OX=3702 GN=At1g13860 PE=...	[more]

BLAST of Chy3G056860.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2R6QQT5	3.1e-07	40.51	Methyltransferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc1...	[more]
A0A2I4H850	1.2e-06	45.57	Methyltransferase OS=Juglans regia OX=51240 GN=LOC109014361 PE=3 SV=1	[more]
A0A6P5S1Z6	4.4e-06	42.50	Methyltransferase OS=Prunus avium OX=42229 GN=LOC110751315 PE=3 SV=1	[more]
A0A2I4EGH4	5.8e-06	43.04	Methyltransferase OS=Juglans regia OX=51240 GN=LOC108989382 PE=3 SV=1	[more]
A0A151QX43	7.5e-06	42.68	Methyltransferase OS=Cajanus cajan OX=3821 GN=KK1_044089 PE=3 SV=1	[more]

BLAST of Chy3G056860.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PSS13488.1	5.81e-09	40.51	Methyltransferase [Actinidia chinensis var. chinensis]	[more]
XP_028951590.1	1.08e-08	46.25	probable methyltransferase PMT5 [Malus domestica] >XP_028951591.1 probable methy...	[more]
XP_038892405.1	2.03e-08	46.15	probable methyltransferase PMT5 [Benincasa hispida] >XP_038892406.1 probable met...	[more]
XP_009356400.1	2.76e-08	43.75	PREDICTED: probable methyltransferase PMT5 [Pyrus x bretschneideri]	[more]
XP_042980398.1	3.72e-08	45.57	probable methyltransferase PMT5 isoform X3 [Carya illinoinensis] >KAG2707004.1 h...	[more]

BLAST of Chy3G056860.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13860.2	8.8e-07	35.90	QUASIMODO2 LIKE 1	[more]
AT1G13860.4	8.8e-07	35.90	QUASIMODO2 LIKE 1	[more]
AT1G13860.1	8.8e-07	35.90	QUASIMODO2 LIKE 1	[more]
AT1G13860.3	8.8e-07	35.90	QUASIMODO2 LIKE 1	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy3G056860	Chy3G056860	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy3G056860.1.exon2	Chy3G056860.1.exon2	exon
Chy3G056860.1.exon1	Chy3G056860.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy3G056860.1.cds2	Chy3G056860.1.cds2	CDS
Chy3G056860.1.cds1	Chy3G056860.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy3G056860.1	Chy3G056860.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity