Chy1G016440.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy1G016440.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH01: 22398934 .. 22402577 (-)
Sequence length510
RNA-Seq ExpressionChy1G016440.1
SyntenyChy1G016440.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCCCTCAAAACCCTAGTTTCAATAGTGTTTATCGCTCTCTTGATCTTACTCTCTCAAACTCCGTCCACTTCGTCAACGGTACTTCACACCATAGCTTTTGATTCTCTCACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCCATGGATCGTCATCAGGCTGATGGTAGAAGGCGAACTCGACGAACAGTAGTGAGAGATCAAGCCCAAGCTCCGAGTCCATTGACTGCAAATCGGAGCCAAACCTTGTCATTGGGAGTTGGCTCTGTCCTAGGTCTTTTTATTCTTGTTGCTCTATTTGTTTGAGTGAAACGTTGCCTTTATTATTATTTCTTTATTAATATCCAAAAACTAGATTGTATTATTATTGTTTTGTTTTGTTTTTTTTAGAAGATTATGGATTTTTTTTTTATTAATGAAAAAAAATATTGGATTGTATTAATATATACTAATTCATTGCAATCCAATCTTACTCACTTCAATTGTTGTGCCCTAATTTTAAATATGAAATGAAAGTATTGCAATTAAAAATTACCGCTATATTCACGGAGGAAGATATGGTTGGAAAAGATGAGGTGAAGACGACCAGAGAATCCGAAAAGTAGAAGAATGAGATAAACAAATATACAATACGATCGAAAATACAAAATAGAAAAATCAAGATCGTGTATTGAATTTTAAAATGCACTATATAGAGCTACGATAGAATATCACGGTGGAAAGTCATTCCTGAAGCCAAATGGCAAAACAGTAAAAAAAAGGCAAAAATCTTGGTAGAAACTAACATCGAGTACTGAAGGCTAGCTACGATCATTTTGTGATGGATGAGAAGTCTCTTATGCAAATAGTGAGTTTCAACATGTTAAGTGAGCTATGACGAGAGTAAAAATGATAGTTTCTATTAGATTTTTTTGAAGCATGTCATACATCATTAACGTGCCTTGAACAAGATCTCATTCATATAAAAATCTCTAAAATATTTTGACAATATATTAATATTAAGATATGTATTTTAGCTAAAAAGTGATGTAATTTAATATATACATTACACACAGAAAAATTGGATATACATTTTGCATTTTTCAAATATTTTATCCAATCATTCTATGGCATTTTAAAAAATATAACTTAGAACTTTGCACTTACTATTTCTTCATTTATTTGTTTTGTAGAAAAGTAAAGTAAATTAGTACATATAGTAATAGTTTTAAAATTTGCAAATTGAATTTTATTAGAAATCTAATCTTTGGTGAATGATACTTATAATTCAAACCTTTATTTCTCACCTTTTTTCTTCATGAAAGAAATCTCCAACATTATATTTTTCAACTTAGAAGGCATATATTTTTCATATTAAAAGGACCACAGCCTTTACTATTTTTATTTCCTAACAAACAAAATTTTGAATATTAATTAATTTCGACATTGCTAATGAAAATTAAACAGACTCTTAGAGACTAAAAAGAAAAATAGAAATATATATCACAATGTAACTATTACTAAATAGAATATGCATTCACATTTCCCAAAAAATTCTCTAAAAAAGACAAATAAAAACCTCTCCTATTAACGTTCATATACTTTATATGTTAAATAAATCTTTTTTTTTTCCTTTTCTATAATAAGTGAAGTTAAAAGAGAACTAAATCTCTCATTTTGGAGTTAATTGATTGAGTTATACTAATTTTGATGAATAAATGTTAAGATTATTGTAGTTTTACAAAAGTAAACATTTGCATGTTATATAATTAAATACAAATTTAAATTATAAATTAAACTTTGACATTTTCAATAAAGATATAAAAGATATATACGTTTTCACTTAATTATGATTAGGCCCCACAAAACCCAATTAATTCCATGTAGAAATTGAAAATTGAGTACTTCTTTTAAAGACCTGCTCGACGACGGAGTCCATGATCCAACAAATCTCAACTCAACCTTATCTTACTTATTTAACACATTTTTTTCTCTGTAAATATAATGCTTAATTCTATTCCATTACACACTTTCCAATCTCGATTTCCTAACTCACTAATTGATCCAAAAGATTAAGTTAATAGGTGAAGACAAATTTAATATAAAAATAGTTGCAAGTATAACAGTTAGATTCAAAATATTAACATTATTTTAAATAAATTGTAAATGTAGCAAAATCTATCAAAGTCTATCATTGATAGACCATGTTGCAAATATTGGTTTATCGTTGATAGACTATGATATATTTACAATTTTTAAAAAATGTTGTTATATACTTAATTATTATTCCTAAAACTATCACTCATTATAACCAATAATGCAAGGGTTTGAACAAAGTGTGTTCATGAACTATCTACTTTGATACAATCTTAAATCACCAATGGATCTAAAAGCTTAAGTTGTTATAATAAGTTAAGACAAATTTAGTATTTATGACATTTTTTCTTCCTTTTCCCCTCTCGATTTGGCTATAAAATATGTCCTAGTAACCCTTTTTTTCTTCTAGTGTATATACAACTAACATCAATGAGTTGTGATACTCAATTATAGAGATGGTTACATATGTGTAATCTAAACTAGGTGTATTCTTTTACTTATGGACAAGAACTAAGATGCAACGTATAATAATAATAAAAAGAGAGAAAACATTTGCTATTTACATTCCTCTGTTGCATGCATGCATGGTTGAGTCAGAAAAAATACAAAGAATAAAACAAAAAACTTTGACAAACAAAACTGTATATTAGAAAAGACAAGCTAAGTAAGAGAGAAAATAAATTGATTTAGAGAGAAATAAAATATTAAGTCAATTCATAGTCATAATTAAGTTTATAGCAAAATGTTAAAAAAATTATAAATAAAGTCGATAAATATACAATCATTTGATAAACTTTGACTGTCATATATCTTTATAATTTAAATCTAATTGATATATTTACCACTTTACATTGATTTCTAAGTACGATTGAAATCAAAGGAGGCTATCGTATATTTGCATTTGAATTAATTTTTAAAACAATTAAAATACTATTTTAAGTTGTAAATTAAACTTTGAAATATTCTATAAAGTACAAACATTTTCATTTAATTGTAATTAGGCCCCAAAAAAGGCAATTAATTACAGGAGGAGACCCTATCCAAGTGGATGAATAATGGTTCTTGAATTTGAATATTTCTCTTCTCCAACAAAAAGCTCAACTCCTAAGTTCATCATCTCTTATACTTAACTTAACTTACATTCTTTTCCCAACTATAAATAATGCTAAACCCATTCCACATTTCTCATTCTCCATTTTTCACTTTCTCTTCACTAATCAACTACATCCCTCATATTCCAAATGGCTTCTTCTCTCAAAACCCTAGTTTCAATATTGTTTATCGCTCTCTTGATCTTGCTCTCTGAAACTCTACCTACATCGTCTGCTATAGTTCATGCCATAGCTTCTGATTCTCTTACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCGACGGATCGTCCTGATCAGCCTGATGGTAGAAGGCGAACTCGACGAAGCGATGACAGAGATCAAGCCCAAGCTCCGAGTCCGTCGACTGCAAATCGAAGCCAAACCTTGTCATTGGGGGTTGGCTCTGTCCTAGGTCTTTTTATTGTCATTGGTCTACATGTTTGA

mRNA sequence

ATGGCTTCTTCCCTCAAAACCCTAGTTTCAATAGTGTTTATCGCTCTCTTGATCTTACTCTCTCAAACTCCGTCCACTTCGTCAACGGTACTTCACACCATAGCTTTTGATTCTCTCACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCCATGGATCGTCATCAGGCTGATGGTAGAAGGCGAACTCGACGAACAGTAGTGAGAGATCAAGCCCAAGCTCCGAGTCCATTGACTGCAAATCGGAGCCAAACCTTGTCATTGGGAGTTGGCTCTGTCCTAGTTCATGCCATAGCTTCTGATTCTCTTACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCGACGGATCGTCCTGATCAGCCTGATGGTAGAAGGCGAACTCGACGAAGCGATGACAGAGATCAAGCCCAAGCTCCGAGTCCGTCGACTGCAAATCGAAGCCAAACCTTGTCATTGGGGGTTGGCTCTGTCCTAGGTCTTTTTATTGTCATTGGTCTACATGTTTGA

Coding sequence (CDS)

ATGGCTTCTTCCCTCAAAACCCTAGTTTCAATAGTGTTTATCGCTCTCTTGATCTTACTCTCTCAAACTCCGTCCACTTCGTCAACGGTACTTCACACCATAGCTTTTGATTCTCTCACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCCATGGATCGTCATCAGGCTGATGGTAGAAGGCGAACTCGACGAACAGTAGTGAGAGATCAAGCCCAAGCTCCGAGTCCATTGACTGCAAATCGGAGCCAAACCTTGTCATTGGGAGTTGGCTCTGTCCTAGTTCATGCCATAGCTTCTGATTCTCTTACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCGACGGATCGTCCTGATCAGCCTGATGGTAGAAGGCGAACTCGACGAAGCGATGACAGAGATCAAGCCCAAGCTCCGAGTCCGTCGACTGCAAATCGAAGCCAAACCTTGTCATTGGGGGTTGGCTCTGTCCTAGGTCTTTTTATTGTCATTGGTCTACATGTTTGA

Protein sequence

MASSLKTLVSIVFIALLILLSQTPSTSSTVLHTIAFDSLTEINFHRNLLQAMDRHQADGRRRTRRTVVRDQAQAPSPLTANRSQTLSLGVGSVLVHAIASDSLTEINFHRNLLQATDRPDQPDGRRRTRRSDDRDQAQAPSPSTANRSQTLSLGVGSVLGLFIVIGLHV*
Homology
[Close]
BLAST of Chy1G016440.1 vs. ExPASy TrEMBL
Match: A0A0A0K7L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394040 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0 

Query: 1  MASSLKTLVSIVFIALLILLSQTPSTSSTVLHTIAFDSLTEIN-FHRNLLQAMDRHQADG 60
          MASSLKTLVSIVFIAL ILLSQTPSTSS VLHTIAFDSLTEIN FHRNLLQAMDRHQADG
Sbjct: 1  MASSLKTLVSIVFIALFILLSQTPSTSSAVLHTIAFDSLTEINYFHRNLLQAMDRHQADG 60

Query: 61 RRRTRRTVVRDQAQAPSPLTANRSQTLSLGVGSVL 95
          RRRTRRTVVRDQAQAPSP TANRSQTLSLG GSVL
Sbjct: 61 RRRTRRTVVRDQAQAPSPSTANRSQTLSLGAGSVL 95

[Close]
BLAST of Chy1G016440.1 vs. NCBI nr
Match: KGN44884.1 (hypothetical protein Csa_015752 [Cucumis sativus])

HSP 1 Score: 158 bits (399), Expect = 1.06e-46
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0 

Query: 1  MASSLKTLVSIVFIALLILLSQTPSTSSTVLHTIAFDSLTEIN-FHRNLLQAMDRHQADG 60
          MASSLKTLVSIVFIAL ILLSQTPSTSS VLHTIAFDSLTEIN FHRNLLQAMDRHQADG
Sbjct: 1  MASSLKTLVSIVFIALFILLSQTPSTSSAVLHTIAFDSLTEINYFHRNLLQAMDRHQADG 60

Query: 61 RRRTRRTVVRDQAQAPSPLTANRSQTLSLGVGSVL 94
          RRRTRRTVVRDQAQAPSP TANRSQTLSLG GSVL
Sbjct: 61 RRRTRRTVVRDQAQAPSPSTANRSQTLSLGAGSVL 95

The following BLAST results are available for this feature:
BLAST of Chy1G016440.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G016440.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7L91.4e-3494.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394040 PE=4 SV=1[more]
BLAST of Chy1G016440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44884.11.06e-4694.74hypothetical protein Csa_015752 [Cucumis sativus][more]
BLAST of Chy1G016440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..80

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy1G016440Chy1G016440gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy1G016440.1.exon2Chy1G016440.1.exon2exon
Chy1G016440.1.exon1Chy1G016440.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy1G016440.1.cds2Chy1G016440.1.cds2CDS
Chy1G016440.1.cds1Chy1G016440.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy1G016440.1Chy1G016440.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane