Chy1G016440 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G016440
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 22398934 .. 22402577 (-)
RNA-Seq Expression	Chy1G016440
Synteny	Chy1G016440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCCCTCAAAACCCTAGTTTCAATAGTGTTTATCGCTCTCTTGATCTTACTCTCTCAAACTCCGTCCACTTCGTCAACGGTACTTCACACCATAGCTTTTGATTCTCTCACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCCATGGATCGTCATCAGGCTGATGGTAGAAGGCGAACTCGACGAACAGTAGTGAGAGATCAAGCCCAAGCTCCGAGTCCATTGACTGCAAATCGGAGCCAAACCTTGTCATTGGGAGTTGGCTCTGTCCTAGGTCTTTTTATTCTTGTTGCTCTATTTGTTTGAGTGAAACGTTGCCTTTATTATTATTTCTTTATTAATATCCAAAAACTAGATTGTATTATTATTGTTTTGTTTTGTTTTTTTTAGAAGATTATGGATTTTTTTTTTATTAATGAAAAAAAATATTGGATTGTATTAATATATACTAATTCATTGCAATCCAATCTTACTCACTTCAATTGTTGTGCCCTAATTTTAAATATGAAATGAAAGTATTGCAATTAAAAATTACCGCTATATTCACGGAGGAAGATATGGTTGGAAAAGATGAGGTGAAGACGACCAGAGAATCCGAAAAGTAGAAGAATGAGATAAACAAATATACAATACGATCGAAAATACAAAATAGAAAAATCAAGATCGTGTATTGAATTTTAAAATGCACTATATAGAGCTACGATAGAATATCACGGTGGAAAGTCATTCCTGAAGCCAAATGGCAAAACAGTAAAAAAAAGGCAAAAATCTTGGTAGAAACTAACATCGAGTACTGAAGGCTAGCTACGATCATTTTGTGATGGATGAGAAGTCTCTTATGCAAATAGTGAGTTTCAACATGTTAAGTGAGCTATGACGAGAGTAAAAATGATAGTTTCTATTAGATTTTTTTGAAGCATGTCATACATCATTAACGTGCCTTGAACAAGATCTCATTCATATAAAAATCTCTAAAATATTTTGACAATATATTAATATTAAGATATGTATTTTAGCTAAAAAGTGATGTAATTTAATATATACATTACACACAGAAAAATTGGATATACATTTTGCATTTTTCAAATATTTTATCCAATCATTCTATGGCATTTTAAAAAATATAACTTAGAACTTTGCACTTACTATTTCTTCATTTATTTGTTTTGTAGAAAAGTAAAGTAAATTAGTACATATAGTAATAGTTTTAAAATTTGCAAATTGAATTTTATTAGAAATCTAATCTTTGGTGAATGATACTTATAATTCAAACCTTTATTTCTCACCTTTTTTCTTCATGAAAGAAATCTCCAACATTATATTTTTCAACTTAGAAGGCATATATTTTTCATATTAAAAGGACCACAGCCTTTACTATTTTTATTTCCTAACAAACAAAATTTTGAATATTAATTAATTTCGACATTGCTAATGAAAATTAAACAGACTCTTAGAGACTAAAAAGAAAAATAGAAATATATATCACAATGTAACTATTACTAAATAGAATATGCATTCACATTTCCCAAAAAATTCTCTAAAAAAGACAAATAAAAACCTCTCCTATTAACGTTCATATACTTTATATGTTAAATAAATCTTTTTTTTTTCCTTTTCTATAATAAGTGAAGTTAAAAGAGAACTAAATCTCTCATTTTGGAGTTAATTGATTGAGTTATACTAATTTTGATGAATAAATGTTAAGATTATTGTAGTTTTACAAAAGTAAACATTTGCATGTTATATAATTAAATACAAATTTAAATTATAAATTAAACTTTGACATTTTCAATAAAGATATAAAAGATATATACGTTTTCACTTAATTATGATTAGGCCCCACAAAACCCAATTAATTCCATGTAGAAATTGAAAATTGAGTACTTCTTTTAAAGACCTGCTCGACGACGGAGTCCATGATCCAACAAATCTCAACTCAACCTTATCTTACTTATTTAACACATTTTTTTCTCTGTAAATATAATGCTTAATTCTATTCCATTACACACTTTCCAATCTCGATTTCCTAACTCACTAATTGATCCAAAAGATTAAGTTAATAGGTGAAGACAAATTTAATATAAAAATAGTTGCAAGTATAACAGTTAGATTCAAAATATTAACATTATTTTAAATAAATTGTAAATGTAGCAAAATCTATCAAAGTCTATCATTGATAGACCATGTTGCAAATATTGGTTTATCGTTGATAGACTATGATATATTTACAATTTTTAAAAAATGTTGTTATATACTTAATTATTATTCCTAAAACTATCACTCATTATAACCAATAATGCAAGGGTTTGAACAAAGTGTGTTCATGAACTATCTACTTTGATACAATCTTAAATCACCAATGGATCTAAAAGCTTAAGTTGTTATAATAAGTTAAGACAAATTTAGTATTTATGACATTTTTTCTTCCTTTTCCCCTCTCGATTTGGCTATAAAATATGTCCTAGTAACCCTTTTTTTCTTCTAGTGTATATACAACTAACATCAATGAGTTGTGATACTCAATTATAGAGATGGTTACATATGTGTAATCTAAACTAGGTGTATTCTTTTACTTATGGACAAGAACTAAGATGCAACGTATAATAATAATAAAAAGAGAGAAAACATTTGCTATTTACATTCCTCTGTTGCATGCATGCATGGTTGAGTCAGAAAAAATACAAAGAATAAAACAAAAAACTTTGACAAACAAAACTGTATATTAGAAAAGACAAGCTAAGTAAGAGAGAAAATAAATTGATTTAGAGAGAAATAAAATATTAAGTCAATTCATAGTCATAATTAAGTTTATAGCAAAATGTTAAAAAAATTATAAATAAAGTCGATAAATATACAATCATTTGATAAACTTTGACTGTCATATATCTTTATAATTTAAATCTAATTGATATATTTACCACTTTACATTGATTTCTAAGTACGATTGAAATCAAAGGAGGCTATCGTATATTTGCATTTGAATTAATTTTTAAAACAATTAAAATACTATTTTAAGTTGTAAATTAAACTTTGAAATATTCTATAAAGTACAAACATTTTCATTTAATTGTAATTAGGCCCCAAAAAAGGCAATTAATTACAGGAGGAGACCCTATCCAAGTGGATGAATAATGGTTCTTGAATTTGAATATTTCTCTTCTCCAACAAAAAGCTCAACTCCTAAGTTCATCATCTCTTATACTTAACTTAACTTACATTCTTTTCCCAACTATAAATAATGCTAAACCCATTCCACATTTCTCATTCTCCATTTTTCACTTTCTCTTCACTAATCAACTACATCCCTCATATTCCAAATGGCTTCTTCTCTCAAAACCCTAGTTTCAATATTGTTTATCGCTCTCTTGATCTTGCTCTCTGAAACTCTACCTACATCGTCTGCTATAGTTCATGCCATAGCTTCTGATTCTCTTACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCGACGGATCGTCCTGATCAGCCTGATGGTAGAAGGCGAACTCGACGAAGCGATGACAGAGATCAAGCCCAAGCTCCGAGTCCGTCGACTGCAAATCGAAGCCAAACCTTGTCATTGGGGGTTGGCTCTGTCCTAGGTCTTTTTATTGTCATTGGTCTACATGTTTGA

mRNA sequence

ATGGCTTCTTCCCTCAAAACCCTAGTTTCAATAGTGTTTATCGCTCTCTTGATCTTACTCTCTCAAACTCCGTCCACTTCGTCAACGGTACTTCACACCATAGCTTTTGATTCTCTCACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCCATGGATCGTCATCAGGCTGATGGTAGAAGGCGAACTCGACGAACAGTAGTGAGAGATCAAGCCCAAGCTCCGAGTCCATTGACTGCAAATCGGAGCCAAACCTTGTCATTGGGAGTTGGCTCTGTCCTAGTTCATGCCATAGCTTCTGATTCTCTTACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCGACGGATCGTCCTGATCAGCCTGATGGTAGAAGGCGAACTCGACGAAGCGATGACAGAGATCAAGCCCAAGCTCCGAGTCCGTCGACTGCAAATCGAAGCCAAACCTTGTCATTGGGGGTTGGCTCTGTCCTAGGTCTTTTTATTGTCATTGGTCTACATGTTTGA

Coding sequence (CDS)

ATGGCTTCTTCCCTCAAAACCCTAGTTTCAATAGTGTTTATCGCTCTCTTGATCTTACTCTCTCAAACTCCGTCCACTTCGTCAACGGTACTTCACACCATAGCTTTTGATTCTCTCACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCCATGGATCGTCATCAGGCTGATGGTAGAAGGCGAACTCGACGAACAGTAGTGAGAGATCAAGCCCAAGCTCCGAGTCCATTGACTGCAAATCGGAGCCAAACCTTGTCATTGGGAGTTGGCTCTGTCCTAGTTCATGCCATAGCTTCTGATTCTCTTACTGAAATTAATTTTCACCGAAACCTCCTTCAAGCGACGGATCGTCCTGATCAGCCTGATGGTAGAAGGCGAACTCGACGAAGCGATGACAGAGATCAAGCCCAAGCTCCGAGTCCGTCGACTGCAAATCGAAGCCAAACCTTGTCATTGGGGGTTGGCTCTGTCCTAGGTCTTTTTATTGTCATTGGTCTACATGTTTGA

Protein sequence

MASSLKTLVSIVFIALLILLSQTPSTSSTVLHTIAFDSLTEINFHRNLLQAMDRHQADGRRRTRRTVVRDQAQAPSPLTANRSQTLSLGVGSVLVHAIASDSLTEINFHRNLLQATDRPDQPDGRRRTRRSDDRDQAQAPSPSTANRSQTLSLGVGSVLGLFIVIGLHV*

Homology

[Close]

BLAST of Chy1G016440 vs. ExPASy TrEMBL
Match: A0A0A0K7L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394040 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MASSLKTLVSIVFIALLILLSQTPSTSSTVLHTIAFDSLTEIN-FHRNLLQAMDRHQADG 60
          MASSLKTLVSIVFIAL ILLSQTPSTSS VLHTIAFDSLTEIN FHRNLLQAMDRHQADG
Sbjct: 1  MASSLKTLVSIVFIALFILLSQTPSTSSAVLHTIAFDSLTEINYFHRNLLQAMDRHQADG 60

Query: 61 RRRTRRTVVRDQAQAPSPLTANRSQTLSLGVGSVL 95
          RRRTRRTVVRDQAQAPSP TANRSQTLSLG GSVL
Sbjct: 61 RRRTRRTVVRDQAQAPSPSTANRSQTLSLGAGSVL 95

[Close]

BLAST of Chy1G016440 vs. NCBI nr
Match: KGN44884.1 (hypothetical protein Csa_015752 [Cucumis sativus])

HSP 1 Score: 158 bits (399), Expect = 1.06e-46
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MASSLKTLVSIVFIALLILLSQTPSTSSTVLHTIAFDSLTEIN-FHRNLLQAMDRHQADG 60
          MASSLKTLVSIVFIAL ILLSQTPSTSS VLHTIAFDSLTEIN FHRNLLQAMDRHQADG
Sbjct: 1  MASSLKTLVSIVFIALFILLSQTPSTSSAVLHTIAFDSLTEINYFHRNLLQAMDRHQADG 60

Query: 61 RRRTRRTVVRDQAQAPSPLTANRSQTLSLGVGSVL 94
          RRRTRRTVVRDQAQAPSP TANRSQTLSLG GSVL
Sbjct: 61 RRRTRRTVVRDQAQAPSPSTANRSQTLSLGAGSVL 95

The following BLAST results are available for this feature:

BLAST of Chy1G016440 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G016440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7L9	1.4e-34	94.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394040 PE=4 SV=1	[more]

BLAST of Chy1G016440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44884.1	1.06e-46	94.74	hypothetical protein Csa_015752 [Cucumis sativus]	[more]

BLAST of Chy1G016440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G016440.1	Chy1G016440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane