Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATTTATTCCCCCTTCTCCTCTATTTTCTTCTTTCTTCTTCCGATGCCCAAGAGAGCAATCAACAACTTCTTCAACTCTGTATTATTCTTAACAGATGTCAGCTCAAGATAATAAACATCATTCTAGGTTTTGAACAATTTTAGTTTCTCAGATCTAGGGTTTGAACACAATTTGTGCATTTCAATAAGCCCAGCTACCTAGGTTCAATTCAGGAAAAAAAATTTAAAAAAAAACCCACGAAACATAAAATTGATTAAAAGAGAATTGTCGAAAGACTAACAAAATTATGAACGGAATGAAATGAAAGTTCCCAAAAAACAAACCTAATTCATCCAAAATCGAAATTGAGATTCTTAAATCAAACCGATAAGTGAAGAGAGTAAAGGAAAATAGGGAAAATCCAACGTGAGAATCGAGATGGCCTGGTCTGAAAATTTTGCAGCGAAAGGAGGGAGGAAGAAAGAGAATCAGACATTAGGCTTGAAAGGAACGAACCCAAGTGAACAGAAACGTAAGACGAAACTTTTTTCTTTTTTTCCAGAACCACGTGAACGGAAGACGGAACTTTTCTTCCTCTTTTTTCAGACCTACATGAGCATAAGCCGAAAAACAAAAGGACCACAAACCGAGAACGGCCGGGGAACAGAGAACGGCGAACTCGCGTAGATGGAAGAAAACGAACAACGAGGAACACGAACAAATGGCGAACTAG mRNA sequence ATTTATTCCCCCTTCTCCTCTATTTTCTTCTTTCTTCTTCCGATGCCCAAGAGAGCAATCAACAACTTCTTCAACTCTACCTACATGAGCATAAGCCGAAAAACAAAAGGACCACAAACCGAGAACGGCCGGGGAACAGAGAACGGCGAACTCGCGTAGATGGAAGAAAACGAACAACGAGGAACACGAACAAATGGCGAACTAG Coding sequence (CDS) ATTTATTCCCCCTTCTCCTCTATTTTCTTCTTTCTTCTTCCGATGCCCAAGAGAGCAATCAACAACTTCTTCAACTCTACCTACATGAGCATAAGCCGAAAAACAAAAGGACCACAAACCGAGAACGGCCGGGGAACAGAGAACGGCGAACTCGCGTAGATGGAAGAAAACGAACAACGAGGAACACGAACAAATGGCGAACTAG Protein sequence IYSPFSSIFFFLLPMPKRAINNFFNSTYMSISRKTKGPQTENGRGTENGELA*MEENEQRGTRTNGELX
Homology
BLAST of Chy1G009580.1 vs. ExPASy TrEMBL
Match: A0A0A0KMI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G270390 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10 Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0
Query: 3 SPFSSIFFFLLPMPKRAINNFFNSTYMSISRKTKGPQTENGRGTENGELA*MEENEQ 60
S F +FF LL + KRAINNFFNST +SI RKT+ P+TENGRGTENGELA MEE+EQ
Sbjct: 4 SLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELA-MEEDEQ 59
BLAST of Chy1G009580.1 vs. NCBI nr
Match: KGN50813.1 (hypothetical protein Csa_018846 [Cucumis sativus]) HSP 1 Score: 73.6 bits (179), Expect = 2.07e-15 Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0
Query: 5 FSSIFFF----LLPMPKRAINNFFNSTYMSISRKTKGPQTENGRGTENGELA*MEENEQ 59
FSS+FF+ LL + KRAINNFFNST +SI RKT+ P+TENGRGTENGELA MEE+EQ
Sbjct: 2 FSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELA-MEEDEQ 59
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KMI9 | 4.9e-10 | 71.93 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G270390 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN50813.1 | 2.07e-15 | 71.19 | hypothetical protein Csa_018846 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 33..67 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..67 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Chy1G009580.1.exon2 | Chy1G009580.1.exon2 | exon |
| Chy1G009580.1.exon1 | Chy1G009580.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Chy1G009580.1.cds2 | Chy1G009580.1.cds2 | CDS |
| Chy1G009580.1.cds1 | Chy1G009580.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Chy1G009580.1 | Chy1G009580.1-protein | polypeptide |
|
