Chy1G009580 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G009580
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 9485234 .. 9485945 (-)
RNA-Seq Expression	Chy1G009580
Synteny	Chy1G009580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATTCCCCCTTCTCCTCTATTTTCTTCTTTCTTCTTCCGATGCCCAAGAGAGCAATCAACAACTTCTTCAACTCTGTATTATTCTTAACAGATGTCAGCTCAAGATAATAAACATCATTCTAGGTTTTGAACAATTTTAGTTTCTCAGATCTAGGGTTTGAACACAATTTGTGCATTTCAATAAGCCCAGCTACCTAGGTTCAATTCAGGAAAAAAAATTTAAAAAAAAACCCACGAAACATAAAATTGATTAAAAGAGAATTGTCGAAAGACTAACAAAATTATGAACGGAATGAAATGAAAGTTCCCAAAAAACAAACCTAATTCATCCAAAATCGAAATTGAGATTCTTAAATCAAACCGATAAGTGAAGAGAGTAAAGGAAAATAGGGAAAATCCAACGTGAGAATCGAGATGGCCTGGTCTGAAAATTTTGCAGCGAAAGGAGGGAGGAAGAAAGAGAATCAGACATTAGGCTTGAAAGGAACGAACCCAAGTGAACAGAAACGTAAGACGAAACTTTTTTCTTTTTTTCCAGAACCACGTGAACGGAAGACGGAACTTTTCTTCCTCTTTTTTCAGACCTACATGAGCATAAGCCGAAAAACAAAAGGACCACAAACCGAGAACGGCCGGGGAACAGAGAACGGCGAACTCGCGTAGATGGAAGAAAACGAACAACGAGGAACACGAACAAATGGCGAACTAG

mRNA sequence

ATTTATTCCCCCTTCTCCTCTATTTTCTTCTTTCTTCTTCCGATGCCCAAGAGAGCAATCAACAACTTCTTCAACTCTACCTACATGAGCATAAGCCGAAAAACAAAAGGACCACAAACCGAGAACGGCCGGGGAACAGAGAACGGCGAACTCGCGTAGATGGAAGAAAACGAACAACGAGGAACACGAACAAATGGCGAACTAG

Coding sequence (CDS)

ATTTATTCCCCCTTCTCCTCTATTTTCTTCTTTCTTCTTCCGATGCCCAAGAGAGCAATCAACAACTTCTTCAACTCTACCTACATGAGCATAAGCCGAAAAACAAAAGGACCACAAACCGAGAACGGCCGGGGAACAGAGAACGGCGAACTCGCGTAGATGGAAGAAAACGAACAACGAGGAACACGAACAAATGGCGAACTAG

Protein sequence

IYSPFSSIFFFLLPMPKRAINNFFNSTYMSISRKTKGPQTENGRGTENGELA*MEENEQRGTRTNGELX

Homology

[Close]

BLAST of Chy1G009580 vs. ExPASy TrEMBL
Match: A0A0A0KMI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G270390 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 3  SPFSSIFFFLLPMPKRAINNFFNSTYMSISRKTKGPQTENGRGTENGELA*MEENEQ 60
          S F  +FF LL + KRAINNFFNST +SI RKT+ P+TENGRGTENGELA MEE+EQ
Sbjct: 4  SLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELA-MEEDEQ 59

[Close]

BLAST of Chy1G009580 vs. NCBI nr
Match: KGN50813.1 (hypothetical protein Csa_018846 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.07e-15
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 5  FSSIFFF----LLPMPKRAINNFFNSTYMSISRKTKGPQTENGRGTENGELA*MEENEQ 59
          FSS+FF+    LL + KRAINNFFNST +SI RKT+ P+TENGRGTENGELA MEE+EQ
Sbjct: 2  FSSLFFYVFFSLLLLTKRAINNFFNSTQVSIRRKTEDPRTENGRGTENGELA-MEEDEQ 59

The following BLAST results are available for this feature:

BLAST of Chy1G009580 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G009580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMI9	4.9e-10	71.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G270390 PE=4 SV=1	[more]

BLAST of Chy1G009580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50813.1	2.07e-15	71.19	hypothetical protein Csa_018846 [Cucumis sativus]	[more]

BLAST of Chy1G009580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G009580.1	Chy1G009580.1	mRNA