Chy1G008000.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy1G008000.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 6480293 .. 6480740 (-)
Sequence length	406
RNA-Seq Expression	Chy1G008000.1
Synteny	Chy1G008000.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGGACTTGGCTTGAACGAGGCTTGCAAAGAACGCACGACTCGGATGGAAACTCGACTTGAAAAAATGGATTGGACCAAGGGAACCTCACGCGAACAACCAAGCTTCGTCGGAGACTTCACGTGGCTTAGTCAGATCGGAGAAGAACATCGCAGATGAGGAATGAGCCCTAGCGCAGACTGAATGGAAAGCGCTCTACAATATTGTTTGGCTTGCTCAAATCATGAACGGAGATTGAAGAACCTTCATGCGGCGTGAACGGCAGTCAGACGTCGGCTCTTGCAGTGGCGAGGACATGGCAGGCGGAGATGGTGAAGCGACGCTGAACTGAAATACCCGGAGAAGGTTGGTGGTGGAACGAAAAAATGGGCTGCAGCTGGGGTTTGATGAGGGAGAAGATGAAAAAGTAAGGTTGAAAAAGATGAATAGTAAAACGCACGCTTCATGA

mRNA sequence

AGGGGACTTGGCTTGAACGAGGCTTGCAAAGAACGCACGACTCGGATGGAAACTCGACTTGAAAAAATGGATTGGACCAAGGGAACCTCACGCGAACAACCAAGCTTCGTCGGAGACTTCACGTGGCTTAGTCAGATCGGAGAAGAACATCGCAGATGAGGAATGAGCCCTAGCGCAGACTGAATGGAAAGCGCTCTACAATATTGTTTGGCTTGCTCAAATCTCAGACGTCGGCTCTTGCAGTGGCGAGGACATGGCAGGCGGAGATGGTGAAGCGACGCTGAACTGAAATACCCGGAGAAGGTTGGTGGTGGAACGAAAAAATGGGCTGCAGCTGGGGTTTGATGAGGGAGAAGATGAAAAAGTAAGGTTGAAAAAGATGAATAGTAAAACGCACGCTTCATGA

Coding sequence (CDS)

AGGGGACTTGGCTTGAACGAGGCTTGCAAAGAACGCACGACTCGGATGGAAACTCGACTTGAAAAAATGGATTGGACCAAGGGAACCTCACGCGAACAACCAAGCTTCGTCGGAGACTTCACGTGGCTTAGTCAGATCGGAGAAGAACATCGCAGATGAGGAATGAGCCCTAGCGCAGACTGAATGGAAAGCGCTCTACAATATTGTTTGGCTTGCTCAAATCTCAGACGTCGGCTCTTGCAGTGGCGAGGACATGGCAGGCGGAGATGGTGAAGCGACGCTGAACTGAAATACCCGGAGAAGGTTGGTGGTGGAACGAAAAAATGGGCTGCAGCTGGGGTTTGATGAGGGAGAAGATGAAAAAGTAAGGTTGAAAAAGATGAATAGTAAAACGCACGCTTCATGA

Protein sequence

RGLGLNEACKERTTRMETRLEKMDWTKGTSREQPSFVGDFTWLSQIGEEHRR*GMSPSAD*MESALQYCLACSNLRRRLLQWRGHGRRRW*SDAELKYPEKVGGGTKKWAAAGV**GRR*KSKVEKDE**NARFMX

Homology

The following BLAST results are available for this feature:

BLAST of Chy1G008000.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G008000.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G008000.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G008000.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..127

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy1G008000	Chy1G008000	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G008000.1.exon2	Chy1G008000.1.exon2	exon
Chy1G008000.1.exon1	Chy1G008000.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G008000.1.cds2	Chy1G008000.1.cds2	CDS
Chy1G008000.1.cds1	Chy1G008000.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy1G008000.1	Chy1G008000.1-protein	polypeptide