Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCTTGTGAAACCCTTTGCCATGAAACCAAATGGGGTTTCTTCTTTTACTTCTCATGCCAATGTTCCCAAACCTCCAGGTGCTATTATTGGAACTTTTTATGGTTGTTGAATTGTAGTTGGGTTTGTGATTGTTTCTGGTTAATACCCATGTTGTGGGGTAACTTGATGTTTCTTGGCTGGGTGGTTACTTTTTTTTTTCCCACTTTTTGGATTGGGATGAAACAGGAGAGGTTAAGGGTATATTTTTGAAGGCAGCAAAGTAGTTTGCAGGCAATGTATTCTGAGGATGGGATTTGGGAGAGGACTTGACGTTTGTTTAGTTTTAATGTTATTCGCTTTCTTCTTTGTGCAGCCCTTTTGGAGAATCCACTAGACAAGGCTTCAAGCTCCACTCGATTGAATATTCTGAGAAAAAAATTGCAGGATCTTGACATTGACATCGAAGCTTGTGTTCCTGGGCAGTTTTACAGTTTGCTTTGTCCAATGGTATTTTGTTTCTAATATCAGTTTCTTTATGCACATTGTGTTCTGTTTTGAGATATTCATCCAATTTGTAGAAGTGAATGAAAAAAGCTGCCAACTTCTATATCTTATTTATTTTTGTATTTATTTTTGGTAAGAAACTAGAAGATATATGGATGAAAAAAAGAAGACAGCCTAAGGGCAGGAAAGAGACCCCCTTCCAAAGGTGTTAATAAAATTAATAAAAGCAGCAAGCATATCTTCAGGAGTCCAATGACTTGTTGCGGTCAAAATTCATCAATTCTAATCAGTTTTCAATTGAAATTCATGAATTGAGGACTAATCTTGGTCTAAGTTCAAGAATTTGGACCACATCTCAGTTGGAATTAGTGAGTTTCAAAGAGTTTTCGGCAGAACTCATGAATTCAGATTTCGACTTCTGCTTCTTTGAAAAGATGTATAAGAAAATCTATTTTACAATTCCTCATTCAATTTGGAGAGGGAAAGTGGGTTAAAAAGTTGATGAATATGGAATGAAAGCAAAAAATGGAAAGAAAGGAAAAGATTTGCATTGGAATCTAGAAAGCAAAAGATGTGCATCAAAAAGAGTCTTTATCAACTTAAATTTGCTCCAAGGGACTCTGCTTCATTAGTTTTTGTTTGGGGCAATCGGATCTAGTTCTGATGTAGTTAGCTTGGCTGTTGGTTATTAGTTGATGTAATTAGCTTGGTTATTAACTGCTGGAAATTACTCACACTTTTAGATTTTTGACCTGTTGTAAAGGTGGTAGGTCACCTTCTGCCTTAGTATAGAACTTGGAATTAGGCTGTTCTAATTTTTTTTGAATTCAGATTTTAATAAGAAGAATAAAGACTTCAGTTTTTTTGTTTGAACTTCTCCAAGACTTCATCAACTTGGTATCGGAGCTCTCGAAGAAGGGACTCATGGTGGGAAGGAACCCAGCCAACATTGGCAAAGGCAAGCGTGTCAATGAGCAACCCTTGGAACCAAAGAGATTCTCTCACTGA
mRNA sequence
ATGTCCCTTGTGAAACCCTTTGCCATGAAACCAAATGGGGTTTCTTCTTTTACTTCTCATGCCAATGTTCCCAAACCTCCAGCCCTTTTGGAGAATCCACTAGACAAGGCTTCAAGCTCCACTCGATTGAATATTCTGAGAAAAAAATTGCAGGATCTTGACATTGACATCGAAGCTTGTGTTCCTGGGCAGTTTTACAGTTTGCTTTGTCCAATGATTTTAATAAGAAGAATAAAGACTTCAGTTTTTTTGTTTGAACTTCTCCAAGACTTCATCAACTTGGTATCGGAGCTCTCGAAGAAGGGACTCATGGTGGGAAGGAACCCAGCCAACATTGGCAAAGGCAAGCGTGTCAATGAGCAACCCTTGGAACCAAAGAGATTCTCTCACTGA
Coding sequence (CDS)
ATGTCCCTTGTGAAACCCTTTGCCATGAAACCAAATGGGGTTTCTTCTTTTACTTCTCATGCCAATGTTCCCAAACCTCCAGCCCTTTTGGAGAATCCACTAGACAAGGCTTCAAGCTCCACTCGATTGAATATTCTGAGAAAAAAATTGCAGGATCTTGACATTGACATCGAAGCTTGTGTTCCTGGGCAGTTTTACAGTTTGCTTTGTCCAATGATTTTAATAAGAAGAATAAAGACTTCAGTTTTTTTGTTTGAACTTCTCCAAGACTTCATCAACTTGGTATCGGAGCTCTCGAAGAAGGGACTCATGGTGGGAAGGAACCCAGCCAACATTGGCAAAGGCAAGCGTGTCAATGAGCAACCCTTGGAACCAAAGAGATTCTCTCACTGA
Protein sequence
MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSLLCPMILIRRIKTSVFLFELLQDFINLVSELSKKGLMVGRNPANIGKGKRVNEQPLEPKRFSH*
Homology
BLAST of Chy12G210380.1 vs. ExPASy Swiss-Prot
Match:
B5X582 (Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g30680 PE=1 SV=1)
HSP 1 Score: 48.9 bits (115), Expect = 5.1e-05
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 0
Query: 6 PFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQF 65
P+ + NG+SS+ S VP P E DK +RL LR+KL + +D E C PGQ
Sbjct: 73 PYYQRTNGLSSYNSIPRVP-TPVDTEVEADKRVVLSRLVTLRRKLAEQGVDAENCPPGQH 132
Query: 66 YSLLCP 72
L+CP
Sbjct: 133 SGLICP 137
BLAST of Chy12G210380.1 vs. ExPASy TrEMBL
Match:
A0A5A7TYL9 (Twinkle-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00560 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 2.1e-46
Identity = 100/116 (86.21%), Postives = 102/116 (87.93%), Query Frame = 0
Query: 9 MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSL 68
MKPNG SSFTSHANVP+PPA ENP DKA SST LNILRKKLQDL IDIEACVPGQF L
Sbjct: 1 MKPNGFSSFTSHANVPRPPAFSENPRDKALSSTLLNILRKKLQDLGIDIEACVPGQFSGL 60
Query: 69 LCPMILIRRIKTSVFLFELLQDFINLVSELSKKGLMVGRNPANIGKGKRVNEQPLE 125
LCPMILIRRIKTSV LFELLQDFINLVSEL KKGLMVGRNPAN GKGKR +EQP E
Sbjct: 61 LCPMILIRRIKTSVLLFELLQDFINLVSELLKKGLMVGRNPANAGKGKRFDEQPFE 116
BLAST of Chy12G210380.1 vs. ExPASy TrEMBL
Match:
A0A0A0LYM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G541890 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.6e-30
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEAC 60
+SLVKPFAMKPNGVSSFTSHANVP+PPALLENP DKASSSTRLNILRKKLQDLDIDIEAC
Sbjct: 73 LSLVKPFAMKPNGVSSFTSHANVPRPPALLENPPDKASSSTRLNILRKKLQDLDIDIEAC 132
Query: 61 VPGQFYSLLCPM 73
VPGQFYSLLCPM
Sbjct: 133 VPGQFYSLLCPM 144
BLAST of Chy12G210380.1 vs. ExPASy TrEMBL
Match:
A0A1S3BDI3 (twinkle homolog protein, chloroplastic/mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488704 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 64/89 (71.91%), Postives = 67/89 (75.28%), Query Frame = 0
Query: 2 SLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACV 61
SLVKPFAMKPNG SSFTSHANVP+PPA ENP DKA SST LNILRKKLQDL IDIEACV
Sbjct: 77 SLVKPFAMKPNGFSSFTSHANVPRPPAFSENPRDKALSSTLLNILRKKLQDLGIDIEACV 136
Query: 62 PGQFYSLLCPMILIRRIKTSVFLFELLQD 91
PGQF LLCPM K F + +D
Sbjct: 137 PGQFSGLLCPMCKGGDSKERSFALHISED 165
BLAST of Chy12G210380.1 vs. ExPASy TrEMBL
Match:
A0A1S3BD14 (twinkle homolog protein, chloroplastic/mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488704 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 64/89 (71.91%), Postives = 67/89 (75.28%), Query Frame = 0
Query: 2 SLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACV 61
SLVKPFAMKPNG SSFTSHANVP+PPA ENP DKA SST LNILRKKLQDL IDIEACV
Sbjct: 77 SLVKPFAMKPNGFSSFTSHANVPRPPAFSENPRDKALSSTLLNILRKKLQDLGIDIEACV 136
Query: 62 PGQFYSLLCPMILIRRIKTSVFLFELLQD 91
PGQF LLCPM K F + +D
Sbjct: 137 PGQFSGLLCPMCKGGDSKERSFALHISED 165
BLAST of Chy12G210380.1 vs. ExPASy TrEMBL
Match:
A0A0A0LVL8 (Toprim domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G542410 PE=4 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 62/82 (75.61%), Postives = 65/82 (79.27%), Query Frame = 0
Query: 9 MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSL 68
MKPNGVSSFTSHANVP+PPALL NP DKAS STRLNILRKKLQDLDIDIEACVPGQF SL
Sbjct: 1 MKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQDLDIDIEACVPGQFSSL 60
Query: 69 LCPMILIRRIKTSVFLFELLQD 91
LCPM K F + +D
Sbjct: 61 LCPMCKGGDTKERSFSLNISED 82
BLAST of Chy12G210380.1 vs. NCBI nr
Match:
KAA0047076.1 (twinkle-like protein [Cucumis melo var. makuwa] >TYK05081.1 twinkle-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 195 bits (496), Expect = 1.26e-60
Identity = 100/116 (86.21%), Postives = 102/116 (87.93%), Query Frame = 0
Query: 9 MKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQFYSL 68
MKPNG SSFTSHANVP+PPA ENP DKA SST LNILRKKLQDL IDIEACVPGQF L
Sbjct: 1 MKPNGFSSFTSHANVPRPPAFSENPRDKALSSTLLNILRKKLQDLGIDIEACVPGQFSGL 60
Query: 69 LCPMILIRRIKTSVFLFELLQDFINLVSELSKKGLMVGRNPANIGKGKRVNEQPLE 124
LCPMILIRRIKTSV LFELLQDFINLVSEL KKGLMVGRNPAN GKGKR +EQP E
Sbjct: 61 LCPMILIRRIKTSVLLFELLQDFINLVSELLKKGLMVGRNPANAGKGKRFDEQPFE 116
BLAST of Chy12G210380.1 vs. NCBI nr
Match:
XP_011659233.2 (twinkle homolog protein, chloroplastic/mitochondrial [Cucumis sativus])
HSP 1 Score: 143 bits (360), Expect = 1.16e-36
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 1 MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEAC 60
MSLVKPFAMKPNGVSSFTSHANVP+PPALLENP DKASSSTRLNILRKKLQDLDIDIEAC
Sbjct: 73 MSLVKPFAMKPNGVSSFTSHANVPRPPALLENPPDKASSSTRLNILRKKLQDLDIDIEAC 132
Query: 61 VPGQFYSLLCPM 72
VPGQFYSLLCPM
Sbjct: 133 VPGQFYSLLCPM 144
BLAST of Chy12G210380.1 vs. NCBI nr
Match:
XP_011659240.2 (twinkle homolog protein, chloroplastic/mitochondrial isoform X5 [Cucumis sativus])
HSP 1 Score: 133 bits (335), Expect = 1.88e-33
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0
Query: 1 MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEAC 60
+SLVKPFAMKPNGVSSFTSHANVP+PPALL NP DKAS STRLNILRKKLQDLDIDIEAC
Sbjct: 70 LSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQDLDIDIEAC 129
Query: 61 VPGQFYSLLCPM 72
VPGQF SLLCPM
Sbjct: 130 VPGQFSSLLCPM 141
BLAST of Chy12G210380.1 vs. NCBI nr
Match:
XP_031736083.1 (twinkle homolog protein, chloroplastic/mitochondrial isoform X4 [Cucumis sativus])
HSP 1 Score: 133 bits (335), Expect = 2.30e-33
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0
Query: 1 MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEAC 60
+SLVKPFAMKPNGVSSFTSHANVP+PPALL NP DKAS STRLNILRKKLQDLDIDIEAC
Sbjct: 70 LSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQDLDIDIEAC 129
Query: 61 VPGQFYSLLCPM 72
VPGQF SLLCPM
Sbjct: 130 VPGQFSSLLCPM 141
BLAST of Chy12G210380.1 vs. NCBI nr
Match:
XP_031736081.1 (twinkle homolog protein, chloroplastic/mitochondrial isoform X3 [Cucumis sativus] >XP_031736082.1 twinkle homolog protein, chloroplastic/mitochondrial isoform X3 [Cucumis sativus])
HSP 1 Score: 133 bits (335), Expect = 2.41e-33
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0
Query: 1 MSLVKPFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEAC 60
+SLVKPFAMKPNGVSSFTSHANVP+PPALL NP DKAS STRLNILRKKLQDLDIDIEAC
Sbjct: 70 LSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQDLDIDIEAC 129
Query: 61 VPGQFYSLLCPM 72
VPGQF SLLCPM
Sbjct: 130 VPGQFSSLLCPM 141
BLAST of Chy12G210380.1 vs. TAIR 10
Match:
AT1G30680.1 (toprim domain-containing protein )
HSP 1 Score: 48.9 bits (115), Expect = 3.6e-06
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 0
Query: 6 PFAMKPNGVSSFTSHANVPKPPALLENPLDKASSSTRLNILRKKLQDLDIDIEACVPGQF 65
P+ + NG+SS+ S VP P E DK +RL LR+KL + +D E C PGQ
Sbjct: 73 PYYQRTNGLSSYNSIPRVP-TPVDTEVEADKRVVLSRLVTLRRKLAEQGVDAENCPPGQH 132
Query: 66 YSLLCP 72
L+CP
Sbjct: 133 SGLICP 137
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| B5X582 | 5.1e-05 | 40.91 | Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TYL9 | 2.1e-46 | 86.21 | Twinkle-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold131... | [more] |
| A0A0A0LYM8 | 1.6e-30 | 95.83 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G541890 PE=4 SV=1 | [more] |
| A0A1S3BDI3 | 1.3e-24 | 71.91 | twinkle homolog protein, chloroplastic/mitochondrial isoform X1 OS=Cucumis melo ... | [more] |
| A0A1S3BD14 | 1.3e-24 | 71.91 | twinkle homolog protein, chloroplastic/mitochondrial isoform X2 OS=Cucumis melo ... | [more] |
| A0A0A0LVL8 | 1.5e-23 | 75.61 | Toprim domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G542410 PE=4... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0047076.1 | 1.26e-60 | 86.21 | twinkle-like protein [Cucumis melo var. makuwa] >TYK05081.1 twinkle-like protein... | [more] |
| XP_011659233.2 | 1.16e-36 | 97.22 | twinkle homolog protein, chloroplastic/mitochondrial [Cucumis sativus] | [more] |
| XP_011659240.2 | 1.88e-33 | 91.67 | twinkle homolog protein, chloroplastic/mitochondrial isoform X5 [Cucumis sativus... | [more] |
| XP_031736083.1 | 2.30e-33 | 91.67 | twinkle homolog protein, chloroplastic/mitochondrial isoform X4 [Cucumis sativus... | [more] |
| XP_031736081.1 | 2.41e-33 | 91.67 | twinkle homolog protein, chloroplastic/mitochondrial isoform X3 [Cucumis sativus... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G30680.1 | 3.6e-06 | 40.91 | toprim domain-containing protein | [more] |
