Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCTTATCCCCAGATCGCAAATTCAACTCTCCCAGTTCTTATCGTACTTTATCGAGCTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGATGGTGCCGGAGCGTTGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGA mRNA sequence ATGCCTTATCCCCAGATCGCAAATTCAACTCTCCCAGTTCTTATCGTACTTTATCGAGCTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGATGGTGCCGGAGCGTTGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGA Coding sequence (CDS) ATGCCTTATCCCCAGATCGCAAATTCAACTCTCCCAGTTCTTATCGTACTTTATCGAGCTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGATGGTGCCGGAGCGTTGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGA Protein sequence MPYPQIANSTLPVLIVLYRAYREGEINRSLIAARKFRLYSVPRPPNADGAGALSSTIPASPELRL*
Homology
BLAST of Chy12G206510.1 vs. NCBI nr
Match: KAE8653205.1 (hypothetical protein Csa_019880 [Cucumis sativus]) HSP 1 Score: 123 bits (309), Expect = 5.32e-34 Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0
Query: 1 MPYPQIANSTLPVLIVLYRAYREGEINRSLIAARKFRLYSVPRPPNADGAGALSSTIPAS 60
MPYPQIANST PVLIVLYRAYREGEINRSLIAARKFRLYSVPRPPNA GAG +SSTIPAS
Sbjct: 101 MPYPQIANSTPPVLIVLYRAYREGEINRSLIAARKFRLYSVPRPPNAGGAGVISSTIPAS 160
Query: 61 PELRL 65
PELRL
Sbjct: 161 PELRL 165
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAE8653205.1 | 5.32e-34 | 93.85 | hypothetical protein Csa_019880 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 43..65 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Chy12G206510.1.exon1 | Chy12G206510.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Chy12G206510.1.cds1 | Chy12G206510.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Chy12G206510.1 | Chy12G206510.1-protein | polypeptide |
|
