Chy12G206510 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G206510
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH12: 475698 .. 475895 (-)
RNA-Seq Expression	Chy12G206510
Synteny	Chy12G206510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTATCCCCAGATCGCAAATTCAACTCTCCCAGTTCTTATCGTACTTTATCGAGCTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGATGGTGCCGGAGCGTTGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGA

mRNA sequence

ATGCCTTATCCCCAGATCGCAAATTCAACTCTCCCAGTTCTTATCGTACTTTATCGAGCTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGATGGTGCCGGAGCGTTGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGA

Coding sequence (CDS)

ATGCCTTATCCCCAGATCGCAAATTCAACTCTCCCAGTTCTTATCGTACTTTATCGAGCTTACAGAGAAGGAGAGATCAACAGATCTCTAATTGCGGCGAGAAAGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGATGGTGCCGGAGCGTTGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGA

Protein sequence

MPYPQIANSTLPVLIVLYRAYREGEINRSLIAARKFRLYSVPRPPNADGAGALSSTIPASPELRL*

Homology

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BLAST of Chy12G206510 vs. NCBI nr
Match: KAE8653205.1 (hypothetical protein Csa_019880 [Cucumis sativus])

HSP 1 Score: 123 bits (309), Expect = 5.32e-34
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MPYPQIANSTLPVLIVLYRAYREGEINRSLIAARKFRLYSVPRPPNADGAGALSSTIPAS 60
           MPYPQIANST PVLIVLYRAYREGEINRSLIAARKFRLYSVPRPPNA GAG +SSTIPAS
Sbjct: 101 MPYPQIANSTPPVLIVLYRAYREGEINRSLIAARKFRLYSVPRPPNAGGAGVISSTIPAS 160

Query: 61  PELRL 65
           PELRL
Sbjct: 161 PELRL 165

The following BLAST results are available for this feature:

BLAST of Chy12G206510 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G206510 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G206510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653205.1	5.32e-34	93.85	hypothetical protein Csa_019880 [Cucumis sativus]	[more]

BLAST of Chy12G206510 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G206510.1	Chy12G206510.1	mRNA