Chy11G190500.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy11G190500.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 5029446 .. 5033270 (+)
Sequence length584
RNA-Seq ExpressionChy11G190500.1
SyntenyChy11G190500.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAGACGAGAGAGTCGGCCGGCGGCGGCACTAAGCTGCAGAAGAAGAGGAGATGACGATTTTAAGAGGAAGAAGAAAGAGTTTTGGGAGAATACCAGTGACAGAGTAACAAGAAGGGAGGATACAGCAGCGTTATCGGAAGAAAGAAAACGACAGCAACAATACGAGAAGAAAGACAAGAGAGCTGAGCTGGTGTCGGCTGCTGCCTCTGAAACCGAGACCCAAAACCCACCGGAAACCACCTCCTCTGAACGGAGATCAACGTGTTGAGCAACCCAAGAAGAAACCAACTGCCGCCACGAAAAAACCCACGGTTAAACCGCGCCGGAAAACCGCTCGAAACCCGCCTAAACCGTCAGCCGTCGGATGCTGTGAGTGTGGTTTGCAGAGGAAAGAAACTCAGTGTCTCTATACGTGAATGTCTGGTGCCTCCTTTTCTTTTTCTTTTCGGCTGCTTCCTTGTCTCACTGTATGTTTGACGACTGCACCTCACCCTCTCTTCTTTTGCTTTTCCTTATTGATAGACCTAAAAGAAAGAAGATGTAACTATTTGCAGCGAGGGTGGTGGTGGTTTGAAGAGGAAGAAGAAAGAGGCGTGGAGGCGTGGACCGAGCACGTGAGACTATGAGAGTGAAGAGGCAAATATTTATTTTTAGGGTTTCCTCCACTTTTTATTTTATTTTATAATTATAATGTTTGCTCAGTTTTTCCTTTTTTATTCTTTGAGTAAAAGTGGAGCTGAATGCTGATTTGCTGGGTGGGTCCACATAGTTTAATTTCTTTAAAGAAAAATATCTCTTTATTAGAAAATTACCAAAAATAAATAAATCAATCAATCAATTTTCAAGGGATTATAGGTTTTTGGAATTGTCATGTAAAGTGGAGTTTCAAGACAAATTTAAGAGGTTACTAGGTATGATCCATACCTAGTAATTCAAATATTAAAATTGTATTAAGAAGCATCATGCTTTATTTAGAAGAGAAATTGAAAATAGTAAATTTGATAAAATATTTACAATATATAGTAAAATTTCAGATTCTATCAATAATAAACATTGATTGATAGACATTGATATGTTTCTATCAATGACATTGATAGACATTGATAGAATCCATCAATTTATATTATTGATAGAATTCAAAATTTTGCTATAGCTTTTAAATATTTTAATTTATTTTGTTTTTTTTAAAATGCACCTTTTTTTAGCATTATTTAATATGTATATGACACTTCAAAATTAATATTAAAATACAAAAATCATTAATGTGAGAGGGAACACGTGTCCCGCTAGCCCTATGTAAATCCACCGGTGGGTGTGGAAGTATTCTTTTGGATGAGTTTCTAGAAGTAAAGACAATCTCTTTTGATTTTTTAGAGATTTATTTGTTGCCTATTTGTGCAAAAGCAAGAGCTATTGTGGAGGGGTTGTTGGTGGTGACTCACCGAGTAGTAAACTTTTATTACTATCCTTTCGTATTTGTGAGTTGTTGATTAATATGATCAATAGATCTATTGAGTCTCATTTGGATGTTCATCCTTTTTAGTATATATTTGACGTTTATATGGCCTCCATGTTCACTCTTGAGTGGCTTTCTAATGCCAAATAGTTGATAGTATCCTGATATTTTATATGTTTAATCACTAAGGCTTGAGGGCGGTTTGGTTCGAAAAGTGAATTGGGTTATAAGATATTGATAAAGACAGTTTAAATTACATTATATTGATTAGAATTTAGATTTCAAATCCCTAATTTATTTTATTTACTTAAATTACAAAGTGATCTTGAAGAAATATCCTCGGGAGGAATTTAGATTGTTTGTTTGTGATTTGACATTGGAAGACGCGTTATGCATAGAGGAATTTATGAAACTTGCTATACGTGTTGAGTTTACTACACATAGGTACAACTTGGCAAAAGAGACGTGTGGTAAACCCTTGAGCTGAGGAAAGGGTATACAAGGATGTAATTGAATATGCAGTACGATTATGCGAAATGACTATCCAGTATGCGAGAGGCATACGACGTGATAAACTATGAAATATTAAATTAAATTTGATATAACACCTATTCTGATAAGTGATTGTGACAATATGACAAATTTGATTTATTTCACATAGTAGCATGTAGAAGTTTGGCGTTCTTGAGTCTGTATTCCGTCCCATTTTGGAAGACTTGTGTATCAATGATCAAATGTACTTTTATAGTTGTTCATTAATGAAGTTCTCTTCTTTCTCTCAAACTTGACTTCCGCGTTTAAAATTATAGTCTATGAAATTGTTTTGCTTACCATGTGTTCAACGTCTCATCCCATGAGAGACGCTCGTTAGGCAACTAGGCGGCACGCCTTCACTTAGTCGCATGAAGTGACCTTTGGAGCAAAACATGACAACATAAGAGGGTAATTCATTACGATGAGAATGGTCAATCAGTCGATGAAAATGCAACAAAATTGAAAAGTTTTATTGGAACATGTGGTCGATCACATGTTTCACTTACACGCACGAGTTGGAGGCTTGTGTCGAAGGAAATAAAAGAAAAATTCTATGACTTGATTTAAGTACCAACATAACTTTATGTTTTCTGGTTTACTCTAGTAGACCAGGATGTATATAATCAACACAAACATTTGGTAAAGAGTGTTAAGTTAATATCTTTAAAGATCTTTCTTTAAAAGTATTATTACTTTTATTTACTTACTTTATGAATAATGTTATGTTGATAATTTATTTGGGACTTTATTAGATCATGAACAGTACCAACAAGGAGAAGAGAAAAAAGTACATGTACAACCATCGATTATTGGAACGGAAAGGGTACGCTAATCTATTGAAAAAATTGGTAAGATAAAATGTAAATGATATATATTATTACATTAATTATATGTTGTATATCTACATTGGGATCCAGGTTCATGTGTGATTATGTAATATTGGATGCAGAAAAACAAGTCACAACACGAAGAACCAACTGAGCGATGTATCTTATAGAAACATGCTCGATTGGATAAGGATGAAAATACTCCTGACATTTGCACTCAAGAAGTCATTGATCGTATAGCAAGTGAGGTTGATTGATATTTTGTACCATTCTTGGTTAATGATTTTTTTTGTTTTTTTTGCCAATTTTCATTTTGATAGAATGAAATAATGAAATATCAATCAATCAAAAGGTCGAAGGTGTTAAAGAACTGACAAGTGATGATATCCTATCACAAACATAGGAACCAAAGATCCTCTAGGAGATTTAGATGAATGGATAAGTTTATCCTGCCAACTGAATATTTTCATACCCAAAAACAAGTTTCTAAACTTAACAAAAATGAGGGTACAACTGAGGCGGAAGAGAAAGCTAAAGATGATGGCACATATTAGAGAGCTAGAGAAAGAATAGAGAAAATAGAAGAAGAGTTCCAAAGAAGGTGAAATAGACAACAAGAGACACGATGATGAACTAAATGAAGACCATGCGGAAGGTTAAATATGTTATTTTCGTATCATTTACTTTGGGTTGAATGTGCGTGGTTATGAATTCATGTAACCAATTATAGTTTGTATGTATGTGAAGGACATCTTATTGAGACAGAAAAACATTTCTCAGAACACGAAAATTGATTTTTCTATTCAAAATACGGAAGAATAAGATGGTGGATTATCAAGCAAGATGGAAATGTAAGTGTGATTCTAATACACTCATATTTATGTAGTTTTTTGTTTGTACCTAAGTTGTGACACACACCCAAAAAAATTGTTTTAACCTTTTTTTTCCTGTTGTAGTTGAAGACAAAATCCTTGAAAAAAAAAAAGAAATTCCAAACAAATTAAA

mRNA sequence

ACAAAGACGAGAGAGTCGGCCGGCGGCGGCACTAAGCTGCAGAAGAAGAGGAGATGACGATTTTAAGAGGAAGAAGAAAGAGTTTTGGGAGAATACCAGTGACAGAGTAACAAGAAGGGAGGATACAGCAGCGTTATCGGAAGAAAGAAAACGACAGCAACAATACGAGAAGAAAGACAAGAGAGCTGAGCTGGTGTCGGCTGCTGCCTCTGAAACCGAGACCCAAAACCCACCGGAAACCACCTCCTCTGAACGGAGATCAACGTGTTGAGCAACCCAAGAAGAAACCAACTGCCGCCACGAAAAAACCCACGGTTAAACCGCGCCGGAAAACCGCTCGAAACCCGCCTAAACCGTCAGCCGTCGGATGCTACCTAAAAGAAAGAAGATGTAACTATTTGCAGCGAGGGTGGTGGTGGTTTGAAGAGGAAGAAGAAAGAGGCGTGGAGGCGTGGACCGAGCACATCATGAACAGTACCAACAAGGAGAAGAGAAAAAAGTACATGTACAACCATCGATTATTGGAACGGAAAGGTTGAAGACAAAATCCTTGAAAAAAAAAAAGAAATTCCAAACAAATTAAA

Coding sequence (CDS)

ACAAAGACGAGAGAGTCGGCCGGCGGCGGCACTAAGCTGCAGAAGAAGAGGAGATGACGATTTTAAGAGGAAGAAGAAAGAGTTTTGGGAGAATACCAGTGACAGAGTAACAAGAAGGGAGGATACAGCAGCGTTATCGGAAGAAAGAAAACGACAGCAACAATACGAGAAGAAAGACAAGAGAGCTGAGCTGGTGTCGGCTGCTGCCTCTGAAACCGAGACCCAAAACCCACCGGAAACCACCTCCTCTGAACGGAGATCAACGTGTTGAGCAACCCAAGAAGAAACCAACTGCCGCCACGAAAAAACCCACGGTTAAACCGCGCCGGAAAACCGCTCGAAACCCGCCTAAACCGTCAGCCGTCGGATGCTACCTAAAAGAAAGAAGATGTAACTATTTGCAGCGAGGGTGGTGGTGGTTTGAAGAGGAAGAAGAAAGAGGCGTGGAGGCGTGGACCGAGCACATCATGAACAGTACCAACAAGGAGAAGAGAAAAAAGTACATGTACAACCATCGATTATTGGAACGGAAAGGTTGAAGACAAAATCCTTGAAAAAAAAAAAGAAATTCCAAACAAATTAAA

Protein sequence

TKTRESAGGGTKLQKKRR*RF*EEEERVLGEYQ*QSNKKGGYSSVIGRKKTTATIREERQES*AGVGCCL*NRDPKPTGNHLL*TEINVLSNPRRNQLPPRKNPRLNRAGKPLETRLNRQPSDAT*KKEDVTICSEGGGGLKRKKKEAWRRGPSTS*TVPTRRREKSTCTTIDYWNGKVEDKILEKKKEIPNKLX
Homology
[Close]
BLAST of Chy11G190500.1 vs. NCBI nr
Match: KAE8652362.1 (hypothetical protein Csa_022253, partial [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 6.34e-05
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 127 KKEDVTICSEGGGGLKRKKKEAWRRG 152
           KKEDV+IC+EGGGGLKRKKK+AWRRG
Sbjct: 127 KKEDVSICNEGGGGLKRKKKKAWRRG 152

The following BLAST results are available for this feature:
BLAST of Chy11G190500.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G190500.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G190500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652362.16.34e-0588.46hypothetical protein Csa_022253, partial [Cucumis sativus][more]
BLAST of Chy11G190500.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 13..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..92

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy11G190500Chy11G190500gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy11G190500.1.exon1Chy11G190500.1.exon1exon
Chy11G190500.1.exon2Chy11G190500.1.exon2exon
Chy11G190500.1.exon3Chy11G190500.1.exon3exon
Chy11G190500.1.exon4Chy11G190500.1.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy11G190500.1.cds1Chy11G190500.1.cds1CDS
Chy11G190500.1.cds2Chy11G190500.1.cds2CDS
Chy11G190500.1.cds3Chy11G190500.1.cds3CDS
Chy11G190500.1.cds4Chy11G190500.1.cds4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy11G190500.1Chy11G190500.1-proteinpolypeptide