Chy11G190500 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G190500
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 5029446 .. 5033270 (+)
RNA-Seq Expression	Chy11G190500
Synteny	Chy11G190500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAGACGAGAGAGTCGGCCGGCGGCGGCACTAAGCTGCAGAAGAAGAGGAGATGACGATTTTAAGAGGAAGAAGAAAGAGTTTTGGGAGAATACCAGTGACAGAGTAACAAGAAGGGAGGATACAGCAGCGTTATCGGAAGAAAGAAAACGACAGCAACAATACGAGAAGAAAGACAAGAGAGCTGAGCTGGTGTCGGCTGCTGCCTCTGAAACCGAGACCCAAAACCCACCGGAAACCACCTCCTCTGAACGGAGATCAACGTGTTGAGCAACCCAAGAAGAAACCAACTGCCGCCACGAAAAAACCCACGGTTAAACCGCGCCGGAAAACCGCTCGAAACCCGCCTAAACCGTCAGCCGTCGGATGCTGTGAGTGTGGTTTGCAGAGGAAAGAAACTCAGTGTCTCTATACGTGAATGTCTGGTGCCTCCTTTTCTTTTTCTTTTCGGCTGCTTCCTTGTCTCACTGTATGTTTGACGACTGCACCTCACCCTCTCTTCTTTTGCTTTTCCTTATTGATAGACCTAAAAGAAAGAAGATGTAACTATTTGCAGCGAGGGTGGTGGTGGTTTGAAGAGGAAGAAGAAAGAGGCGTGGAGGCGTGGACCGAGCACGTGAGACTATGAGAGTGAAGAGGCAAATATTTATTTTTAGGGTTTCCTCCACTTTTTATTTTATTTTATAATTATAATGTTTGCTCAGTTTTTCCTTTTTTATTCTTTGAGTAAAAGTGGAGCTGAATGCTGATTTGCTGGGTGGGTCCACATAGTTTAATTTCTTTAAAGAAAAATATCTCTTTATTAGAAAATTACCAAAAATAAATAAATCAATCAATCAATTTTCAAGGGATTATAGGTTTTTGGAATTGTCATGTAAAGTGGAGTTTCAAGACAAATTTAAGAGGTTACTAGGTATGATCCATACCTAGTAATTCAAATATTAAAATTGTATTAAGAAGCATCATGCTTTATTTAGAAGAGAAATTGAAAATAGTAAATTTGATAAAATATTTACAATATATAGTAAAATTTCAGATTCTATCAATAATAAACATTGATTGATAGACATTGATATGTTTCTATCAATGACATTGATAGACATTGATAGAATCCATCAATTTATATTATTGATAGAATTCAAAATTTTGCTATAGCTTTTAAATATTTTAATTTATTTTGTTTTTTTTAAAATGCACCTTTTTTTAGCATTATTTAATATGTATATGACACTTCAAAATTAATATTAAAATACAAAAATCATTAATGTGAGAGGGAACACGTGTCCCGCTAGCCCTATGTAAATCCACCGGTGGGTGTGGAAGTATTCTTTTGGATGAGTTTCTAGAAGTAAAGACAATCTCTTTTGATTTTTTAGAGATTTATTTGTTGCCTATTTGTGCAAAAGCAAGAGCTATTGTGGAGGGGTTGTTGGTGGTGACTCACCGAGTAGTAAACTTTTATTACTATCCTTTCGTATTTGTGAGTTGTTGATTAATATGATCAATAGATCTATTGAGTCTCATTTGGATGTTCATCCTTTTTAGTATATATTTGACGTTTATATGGCCTCCATGTTCACTCTTGAGTGGCTTTCTAATGCCAAATAGTTGATAGTATCCTGATATTTTATATGTTTAATCACTAAGGCTTGAGGGCGGTTTGGTTCGAAAAGTGAATTGGGTTATAAGATATTGATAAAGACAGTTTAAATTACATTATATTGATTAGAATTTAGATTTCAAATCCCTAATTTATTTTATTTACTTAAATTACAAAGTGATCTTGAAGAAATATCCTCGGGAGGAATTTAGATTGTTTGTTTGTGATTTGACATTGGAAGACGCGTTATGCATAGAGGAATTTATGAAACTTGCTATACGTGTTGAGTTTACTACACATAGGTACAACTTGGCAAAAGAGACGTGTGGTAAACCCTTGAGCTGAGGAAAGGGTATACAAGGATGTAATTGAATATGCAGTACGATTATGCGAAATGACTATCCAGTATGCGAGAGGCATACGACGTGATAAACTATGAAATATTAAATTAAATTTGATATAACACCTATTCTGATAAGTGATTGTGACAATATGACAAATTTGATTTATTTCACATAGTAGCATGTAGAAGTTTGGCGTTCTTGAGTCTGTATTCCGTCCCATTTTGGAAGACTTGTGTATCAATGATCAAATGTACTTTTATAGTTGTTCATTAATGAAGTTCTCTTCTTTCTCTCAAACTTGACTTCCGCGTTTAAAATTATAGTCTATGAAATTGTTTTGCTTACCATGTGTTCAACGTCTCATCCCATGAGAGACGCTCGTTAGGCAACTAGGCGGCACGCCTTCACTTAGTCGCATGAAGTGACCTTTGGAGCAAAACATGACAACATAAGAGGGTAATTCATTACGATGAGAATGGTCAATCAGTCGATGAAAATGCAACAAAATTGAAAAGTTTTATTGGAACATGTGGTCGATCACATGTTTCACTTACACGCACGAGTTGGAGGCTTGTGTCGAAGGAAATAAAAGAAAAATTCTATGACTTGATTTAAGTACCAACATAACTTTATGTTTTCTGGTTTACTCTAGTAGACCAGGATGTATATAATCAACACAAACATTTGGTAAAGAGTGTTAAGTTAATATCTTTAAAGATCTTTCTTTAAAAGTATTATTACTTTTATTTACTTACTTTATGAATAATGTTATGTTGATAATTTATTTGGGACTTTATTAGATCATGAACAGTACCAACAAGGAGAAGAGAAAAAAGTACATGTACAACCATCGATTATTGGAACGGAAAGGGTACGCTAATCTATTGAAAAAATTGGTAAGATAAAATGTAAATGATATATATTATTACATTAATTATATGTTGTATATCTACATTGGGATCCAGGTTCATGTGTGATTATGTAATATTGGATGCAGAAAAACAAGTCACAACACGAAGAACCAACTGAGCGATGTATCTTATAGAAACATGCTCGATTGGATAAGGATGAAAATACTCCTGACATTTGCACTCAAGAAGTCATTGATCGTATAGCAAGTGAGGTTGATTGATATTTTGTACCATTCTTGGTTAATGATTTTTTTTGTTTTTTTTGCCAATTTTCATTTTGATAGAATGAAATAATGAAATATCAATCAATCAAAAGGTCGAAGGTGTTAAAGAACTGACAAGTGATGATATCCTATCACAAACATAGGAACCAAAGATCCTCTAGGAGATTTAGATGAATGGATAAGTTTATCCTGCCAACTGAATATTTTCATACCCAAAAACAAGTTTCTAAACTTAACAAAAATGAGGGTACAACTGAGGCGGAAGAGAAAGCTAAAGATGATGGCACATATTAGAGAGCTAGAGAAAGAATAGAGAAAATAGAAGAAGAGTTCCAAAGAAGGTGAAATAGACAACAAGAGACACGATGATGAACTAAATGAAGACCATGCGGAAGGTTAAATATGTTATTTTCGTATCATTTACTTTGGGTTGAATGTGCGTGGTTATGAATTCATGTAACCAATTATAGTTTGTATGTATGTGAAGGACATCTTATTGAGACAGAAAAACATTTCTCAGAACACGAAAATTGATTTTTCTATTCAAAATACGGAAGAATAAGATGGTGGATTATCAAGCAAGATGGAAATGTAAGTGTGATTCTAATACACTCATATTTATGTAGTTTTTTGTTTGTACCTAAGTTGTGACACACACCCAAAAAAATTGTTTTAACCTTTTTTTTCCTGTTGTAGTTGAAGACAAAATCCTTGAAAAAAAAAAAGAAATTCCAAACAAATTAAA

mRNA sequence

ACAAAGACGAGAGAGTCGGCCGGCGGCGGCACTAAGCTGCAGAAGAAGAGGAGATGACGATTTTAAGAGGAAGAAGAAAGAGTTTTGGGAGAATACCAGTGACAGAGTAACAAGAAGGGAGGATACAGCAGCGTTATCGGAAGAAAGAAAACGACAGCAACAATACGAGAAGAAAGACAAGAGAGCTGAGCTGGTGTCGGCTGCTGCCTCTGAAACCGAGACCCAAAACCCACCGGAAACCACCTCCTCTGAACGGAGATCAACGTGTTGAGCAACCCAAGAAGAAACCAACTGCCGCCACGAAAAAACCCACGGTTAAACCGCGCCGGAAAACCGCTCGAAACCCGCCTAAACCGTCAGCCGTCGGATGCTACCTAAAAGAAAGAAGATGTAACTATTTGCAGCGAGGGTGGTGGTGGTTTGAAGAGGAAGAAGAAAGAGGCGTGGAGGCGTGGACCGAGCACATCATGAACAGTACCAACAAGGAGAAGAGAAAAAAGTACATGTACAACCATCGATTATTGGAACGGAAAGGTTGAAGACAAAATCCTTGAAAAAAAAAAAGAAATTCCAAACAAATTAAA

Coding sequence (CDS)

ACAAAGACGAGAGAGTCGGCCGGCGGCGGCACTAAGCTGCAGAAGAAGAGGAGATGACGATTTTAAGAGGAAGAAGAAAGAGTTTTGGGAGAATACCAGTGACAGAGTAACAAGAAGGGAGGATACAGCAGCGTTATCGGAAGAAAGAAAACGACAGCAACAATACGAGAAGAAAGACAAGAGAGCTGAGCTGGTGTCGGCTGCTGCCTCTGAAACCGAGACCCAAAACCCACCGGAAACCACCTCCTCTGAACGGAGATCAACGTGTTGAGCAACCCAAGAAGAAACCAACTGCCGCCACGAAAAAACCCACGGTTAAACCGCGCCGGAAAACCGCTCGAAACCCGCCTAAACCGTCAGCCGTCGGATGCTACCTAAAAGAAAGAAGATGTAACTATTTGCAGCGAGGGTGGTGGTGGTTTGAAGAGGAAGAAGAAAGAGGCGTGGAGGCGTGGACCGAGCACATCATGAACAGTACCAACAAGGAGAAGAGAAAAAAGTACATGTACAACCATCGATTATTGGAACGGAAAGGTTGAAGACAAAATCCTTGAAAAAAAAAAAGAAATTCCAAACAAATTAAA

Protein sequence

TKTRESAGGGTKLQKKRR*RF*EEEERVLGEYQ*QSNKKGGYSSVIGRKKTTATIREERQES*AGVGCCL*NRDPKPTGNHLL*TEINVLSNPRRNQLPPRKNPRLNRAGKPLETRLNRQPSDAT*KKEDVTICSEGGGGLKRKKKEAWRRGPSTS*TVPTRRREKSTCTTIDYWNGKVEDKILEKKKEIPNKLX

Homology

[Close]

BLAST of Chy11G190500 vs. NCBI nr
Match: KAE8652362.1 (hypothetical protein Csa_022253, partial [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 6.34e-05
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 127 KKEDVTICSEGGGGLKRKKKEAWRRG 152
           KKEDV+IC+EGGGGLKRKKK+AWRRG
Sbjct: 127 KKEDVSICNEGGGGLKRKKKKAWRRG 152

The following BLAST results are available for this feature:

BLAST of Chy11G190500 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G190500 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G190500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652362.1	6.34e-05	88.46	hypothetical protein Csa_022253, partial [Cucumis sativus]	[more]

BLAST of Chy11G190500 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 13..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G190500.1	Chy11G190500.1	mRNA