CcUC10G205520.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G205520.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 32709631 .. 32709924 (+)
Sequence length	294
RNA-Seq Expression	CcUC10G205520.1
Synteny	CcUC10G205520.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTCAGTAAGCTCCTATCTGCAGTCAAAACAAGATCAATCGAGAACTGCAGGGTTTACAAACAAGCAAGTAAAGCTAGAATTAGAGAGTATGATGATGGGTTTTTTAGGGCATACATTGAATGGTGGAATAAGCAGCATGAGCCAGAATTAGAACTCCGAAGAGACCGACCACGAAGCCCACTCCCATCTCGACTGACGGATCTCAATCACCGGAACGGCGGAAGCTACAGAGTTGATGATCACGGCGGCGGAGGTGAAGAAACTTCCAATTTCAATGTGAAGCAATGA

mRNA sequence

ATGATCTTCAGTAAGCTCCTATCTGCAGTCAAAACAAGATCAATCGAGAACTGCAGGGTTTACAAACAAGCAAGTAAAGCTAGAATTAGAGAGTATGATGATGGGTTTTTTAGGGCATACATTGAATGGTGGAATAAGCAGCATGAGCCAGAATTAGAACTCCGAAGAGACCGACCACGAAGCCCACTCCCATCTCGACTGACGGATCTCAATCACCGGAACGGCGGAAGCTACAGAGTTGATGATCACGGCGGCGGAGGTGAAGAAACTTCCAATTTCAATGTGAAGCAATGA

Coding sequence (CDS)

ATGATCTTCAGTAAGCTCCTATCTGCAGTCAAAACAAGATCAATCGAGAACTGCAGGGTTTACAAACAAGCAAGTAAAGCTAGAATTAGAGAGTATGATGATGGGTTTTTTAGGGCATACATTGAATGGTGGAATAAGCAGCATGAGCCAGAATTAGAACTCCGAAGAGACCGACCACGAAGCCCACTCCCATCTCGACTGACGGATCTCAATCACCGGAACGGCGGAAGCTACAGAGTTGATGATCACGGCGGCGGAGGTGAAGAAACTTCCAATTTCAATGTGAAGCAATGA

Protein sequence

MIFSKLLSAVKTRSIENCRVYKQASKARIREYDDGFFRAYIEWWNKQHEPELELRRDRPRSPLPSRLTDLNHRNGGSYRVDDHGGGGEETSNFNVKQ

Homology

The following BLAST results are available for this feature:

BLAST of CcUC10G205520.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G205520.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G205520.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G205520.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G205520	CcUC10G205520	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G205520.1-exon	CcUC10G205520.1-exon-CicolChr10:32709631..32709924	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G205520.1-cds	CcUC10G205520.1-cds-CicolChr10:32709631..32709924	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G205520.1	CcUC10G205520.1-protein	polypeptide