CcUC10G202860.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G202860.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 30099654 .. 30100570 (+)
Sequence length	633
RNA-Seq Expression	CcUC10G202860.1
Synteny	CcUC10G202860.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAGTTGACGTCTCCTCTCCCAGAAAATGAAGGCAAGGACAGCTCCACAAAAGGCCAAGACTCCGGGTATTGTGAACCAAACCCACTTTCGAGGTCGACCAAAATCTGTGCTGTAGAACTGCCACGATTTCAGAGCGTTCAACTGTGTGTAATTGCTTGTTGAAGCAGAGAATCCCACGTAAACCACGTCTGGGAGAATGGAGAGGTCCAAGGATTGTGAAATGACGAGATTTTTCAGTTGGTCTTCTGTTTTGTTGGACATAGAAACGTAGATGTAAATGTTTTCCCCATCATATTTTATTATCCCATAAACATCCCTGCCAGATGTAAGATTAACGCCAAAGCTCGGAAGTGGCTGTTGTGCAATCGAGACAATACTGTTCACATTCAAGCTCGCATGGTTGCTATCAATATCTTCTGGGAAAAGTTCTTCCTAGTATCGAATTCGATTGCCACTATATTCGCCTCTGACGTTCCATTTGTGAAGGGAGTTACAGTTCCCAGCCACTGTCCACTGCTGCCGAACGGAGGATCGGCATTGGCGGTGAGTATGAAGGCCATCCCTTCGCCTCCGCCTGACAGCGTTTGCGGGCTCATGTTGAACTTAAAGTTAGTGCTAAAGGATGCAGTTTTACCATTGTTTCTCAGCTTGAATTGCCTTTTGTAGATGGCTCTTTCACACGCATAGTCGATCGGATCTCCTTGGTCATCCGATGTGATTCGGATGGTGTTGAGGAAGATGTGAGCATTCTTACTCAGAATCAGCTCCGTCTTGCTATTGCCAGTGAAGATTGGGAAGTTAAAATAGAAGGAAAGTGTGAGGTTGATGGTGCAGCCGAAGAAGGCTGTGGCCAGCAGGAGAATTCTGATTGTTGCTTGACAACTGCTCATCGTCTCTGTTTTTCTGTTTAG

mRNA sequence

ATGATTCAGTTGACGTCTCCTCTCCCAGAAAATGAAGGCAAGGACAGCTCCACAAAAGGCCAAGACTCCGGGTATTGTGAACCAAACCCACTTTCGAGGTCGACCAAAATCTGTGCTGTAGAACTGCCACGATTTCAGAGCGTTCAACTATGTAAGATTAACGCCAAAGCTCGGAAGTGGCTGTTGTGCAATCGAGACAATACTGTTCACATTCAAGCTCGCATGGTTGCTATCAATATCTTCTGGGAAAAGTTCTTCCTAGTATCGAATTCGATTGCCACTATATTCGCCTCTGACGTTCCATTTGTGAAGGGAGTTACAGTTCCCAGCCACTGTCCACTGCTGCCGAACGGAGGATCGGCATTGGCGCTTGAATTGCCTTTTGTAGATGGCTCTTTCACACGCATAGTCGATCGGATCTCCTTGGTCATCCGATGTGATTCGGATGGTGTTGAGGAAGATGTGAGCATTCTTACTCAGAATCAGCTCCGTCTTGCTATTGCCAGTGAAGATTGGGAAGTTAAAATAGAAGGAAAGTGTGAGGTTGATGGTGCAGCCGAAGAAGGCTGTGGCCAGCAGGAGAATTCTGATTGTTGCTTGACAACTGCTCATCGTCTCTGTTTTTCTGTTTAG

Coding sequence (CDS)

ATGATTCAGTTGACGTCTCCTCTCCCAGAAAATGAAGGCAAGGACAGCTCCACAAAAGGCCAAGACTCCGGGTATTGTGAACCAAACCCACTTTCGAGGTCGACCAAAATCTGTGCTGTAGAACTGCCACGATTTCAGAGCGTTCAACTATGTAAGATTAACGCCAAAGCTCGGAAGTGGCTGTTGTGCAATCGAGACAATACTGTTCACATTCAAGCTCGCATGGTTGCTATCAATATCTTCTGGGAAAAGTTCTTCCTAGTATCGAATTCGATTGCCACTATATTCGCCTCTGACGTTCCATTTGTGAAGGGAGTTACAGTTCCCAGCCACTGTCCACTGCTGCCGAACGGAGGATCGGCATTGGCGCTTGAATTGCCTTTTGTAGATGGCTCTTTCACACGCATAGTCGATCGGATCTCCTTGGTCATCCGATGTGATTCGGATGGTGTTGAGGAAGATGTGAGCATTCTTACTCAGAATCAGCTCCGTCTTGCTATTGCCAGTGAAGATTGGGAAGTTAAAATAGAAGGAAAGTGTGAGGTTGATGGTGCAGCCGAAGAAGGCTGTGGCCAGCAGGAGAATTCTGATTGTTGCTTGACAACTGCTCATCGTCTCTGTTTTTCTGTTTAG

Protein sequence

MIQLTSPLPENEGKDSSTKGQDSGYCEPNPLSRSTKICAVELPRFQSVQLCKINAKARKWLLCNRDNTVHIQARMVAINIFWEKFFLVSNSIATIFASDVPFVKGVTVPSHCPLLPNGGSALALELPFVDGSFTRIVDRISLVIRCDSDGVEEDVSILTQNQLRLAIASEDWEVKIEGKCEVDGAAEEGCGQQENSDCCLTTAHRLCFSV

Homology

The following BLAST results are available for this feature:

BLAST of CcUC10G202860.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G202860.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G202860.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G202860.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G202860	CcUC10G202860	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G202860.1-exon	CcUC10G202860.1-exon-CicolChr10:30099654..30099802	exon
CcUC10G202860.1-exon	CcUC10G202860.1-exon-CicolChr10:30099983..30100202	exon
CcUC10G202860.1-exon	CcUC10G202860.1-exon-CicolChr10:30100307..30100570	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G202860.1-cds	CcUC10G202860.1-cds-CicolChr10:30099654..30099802	CDS
CcUC10G202860.1-cds	CcUC10G202860.1-cds-CicolChr10:30099983..30100202	CDS
CcUC10G202860.1-cds	CcUC10G202860.1-cds-CicolChr10:30100307..30100570	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G202860.1	CcUC10G202860.1-protein	polypeptide