CcUC08G150700.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC08G150700.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	extensin-3-like
Location	CicolChr08: 18933327 .. 18933800 (+)
Sequence length	474
RNA-Seq Expression	CcUC08G150700.1
Synteny	CcUC08G150700.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTCATAACCCCCTTTTCGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTTGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCGTCGTTGCCACTGCAGGAATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCTACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCACTGTCAGTGAAGAAGCTTTACATATCCCAGGCAAGGCGGTCAGTGCCGCCGCCACCGCCAAAGGAGCAACCGCCATATCCTTGGGGGTGGACCATCCCTAGATCGCCCCCACCTCCTTTCTAA

mRNA sequence

ATGGAGTCTCATAACCCCCTTTTCGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTTGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCGTCGTTGCCACTGCAGGAATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCTACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCACTGTCAGTGAAGAAGCTTTACATATCCCAGGCAAGGCGGTCAGTGCCGCCGCCACCGCCAAAGGAGCAACCGCCATATCCTTGGGGGTGGACCATCCCTAGATCGCCCCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGAGTCTCATAACCCCCTTTTCGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTTGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCGTCGTTGCCACTGCAGGAATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCTACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCACTGTCAGTGAAGAAGCTTTACATATCCCAGGCAAGGCGGTCAGTGCCGCCGCCACCGCCAAAGGAGCAACCGCCATATCCTTGGGGGTGGACCATCCCTAGATCGCCCCCACCTCCTTTCTAA

Protein sequence

MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARRSVPPPPPKEQPPYPWGWTIPRSPPPPF

Homology

[Close]

BLAST of CcUC08G150700.1 vs. NCBI nr
Match: XP_008466986.1 (PREDICTED: extensin-3-like, partial [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-34
Identity = 90/131 (68.70%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPWSLLPSPPP---TTRPIVPYYPFI 60
           MESHNP+FVFFL II+PLLSLNLPSNFAAH+I   P SLL SPPP    TRPIVPY+PFI
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYI---PSSLL-SPPPMPSITRPIVPYHPFI 60

Query: 61  FPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRPYPP-SYHVIPPPAS 120
           FPPP  K   +HT  PPP  P Q+L RPIVPYYP+KF PPPSRK+  PP SYH  PPP  
Sbjct: 61  FPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTL 120

Query: 121 PLSVKKLYISQ 128
           PL  KKLY+S+
Sbjct: 121 PLPAKKLYMSE 127

[Close]

BLAST of CcUC08G150700.1 vs. NCBI nr
Match: KAA0058946.1 (extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 6.4e-28
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
           MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P 
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60

Query: 76  SLPLQELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRSVPP 135
           S P +ELGRPIVPYYP+KFLPPP RK  + PP YHV PP   P   KKL++S AR++ P 
Sbjct: 61  SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120

Query: 136 PPPK 139
           PPP+
Sbjct: 121 PPPE 121

[Close]

BLAST of CcUC08G150700.1 vs. NCBI nr
Match: TYK10982.1 (extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 6.4e-28
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
           MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P 
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60

Query: 76  SLPLQELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRSVPP 135
           S P +ELGRPIVPYYP+KFLPPP RK  + PP YHV PP   P   KKL++S AR++ P 
Sbjct: 61  SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120

Query: 136 PPPK 139
           PPP+
Sbjct: 121 PPPE 121

[Close]

BLAST of CcUC08G150700.1 vs. NCBI nr
Match: KAE8647164.1 (hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypothetical protein Csa_018930, partial [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-26
Identity = 82/134 (61.19%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPWSLLPSP--PPTTRPIVPYYPFIFPPPPSKKTHKHTSRP 75
           M LLSLNLPSN A H I   P SLL  P  PP TRPIVP++PF F P P +KT +HT  P
Sbjct: 1   MSLLSLNLPSNSAEHDI---PSSLLSPPLMPPITRPIVPHHPFTF-PSPFRKTFRHTWLP 60

Query: 76  PPSLPL-QELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRS 135
           PPS P  QEL RPIVPY+P+KF PPPSRK+   PPSYH  PPPA  L  +KLY+S+ RR+
Sbjct: 61  PPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLARKLYMSEVRRA 120

Query: 136 VPPPPPKEQPPYPW 146
            PPPPP +  PY W
Sbjct: 121 TPPPPPIK--PYQW 128

[Close]

BLAST of CcUC08G150700.1 vs. NCBI nr
Match: KAA0058948.1 (extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-24
Identity = 66/103 (64.08%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 44  PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRP 103
           P  TRPIVPY+PFIFPPP  K   +HT  PPP  P Q+L RPIVPYYP+KF PPPSRK+ 
Sbjct: 2   PSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQA 61

Query: 104 YPP-SYHVIPPPASPLSVKKLYISQARRSVPPPPPKEQPPYPW 146
            PP SYH  PPP  PL  KKLY+S+ RR+ PPPPPK+  PY W
Sbjct: 62  NPPLSYHAFPPPTLPLPAKKLYMSEVRRAAPPPPPKK--PYQW 102

[Close]

BLAST of CcUC08G150700.1 vs. ExPASy TrEMBL
Match: A0A1S3CSG8 (extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.6e-35
Identity = 90/131 (68.70%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPWSLLPSPPP---TTRPIVPYYPFI 60
           MESHNP+FVFFL II+PLLSLNLPSNFAAH+I   P SLL SPPP    TRPIVPY+PFI
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYI---PSSLL-SPPPMPSITRPIVPYHPFI 60

Query: 61  FPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRPYPP-SYHVIPPPAS 120
           FPPP  K   +HT  PPP  P Q+L RPIVPYYP+KF PPPSRK+  PP SYH  PPP  
Sbjct: 61  FPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTL 120

Query: 121 PLSVKKLYISQ 128
           PL  KKLY+S+
Sbjct: 121 PLPAKKLYMSE 127

[Close]

BLAST of CcUC08G150700.1 vs. ExPASy TrEMBL
Match: A0A0A0KD80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 101/162 (62.35%), Postives = 115/162 (70.99%), Query Frame = 0


Query: 1   MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPWSLLPSP--PPTTRPIVPYYPFIF 60
           MES NP+FVFFL IIM LLSLNLPSN A H I   P SLL  P  PP TRPIVP++PF F
Sbjct: 1   MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDI---PSSLLSPPLMPPITRPIVPHHPFTF 60

Query: 61  PPPPSKKTHKHTSRPPPSLPL-QELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPAS 120
            P P +KT +HT  PPPS P  QEL RPIVPY+P+KF PPPSRK+   PPSYH  PPPA 
Sbjct: 61  -PSPFRKTFRHTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPAL 120

Query: 121 PLSVKKLYISQARRSVPPPPPKEQPPYPW-GWTIPRSPPPPF 158
            L  +KLY+S+ RR+ PPPPP +  PY W    I +SPPPPF
Sbjct: 121 LLLARKLYMSEVRRATPPPPPIK--PYQWPKGKIRKSPPPPF 156

[Close]

BLAST of CcUC08G150700.1 vs. ExPASy TrEMBL
Match: A0A5A7UXN4 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001280 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
           MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P 
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60

Query: 76  SLPLQELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRSVPP 135
           S P +ELGRPIVPYYP+KFLPPP RK  + PP YHV PP   P   KKL++S AR++ P 
Sbjct: 61  SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120

Query: 136 PPPK 139
           PPP+
Sbjct: 121 PPPE 121

[Close]

BLAST of CcUC08G150700.1 vs. ExPASy TrEMBL
Match: A0A5D3CI60 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00140 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 16  MPLLSLNLPSNFAAHHIHPSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP 75
           MPLLS NLPSNFA H+I PS  S  PS PPTT+PIVPY+PFI  PPP KKT KHT   P 
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLS-PPSMPPTTKPIVPYHPFII-PPPFKKTSKHT-WSPS 60

Query: 76  SLPLQELGRPIVPYYPFKFLPPPSRKRPY-PPSYHVIPPPASPLSVKKLYISQARRSVPP 135
           S P +ELGRPIVPYYP+KFLPPP RK  + PP YHV PP   P   KKL++S AR++ P 
Sbjct: 61  SRPQKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPA 120

Query: 136 PPPK 139
           PPP+
Sbjct: 121 PPPE 121

[Close]

BLAST of CcUC08G150700.1 vs. ExPASy TrEMBL
Match: A0A5D3CVI1 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00010 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 66/103 (64.08%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 44  PPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQELGRPIVPYYPFKFLPPPSRKRP 103
           P  TRPIVPY+PFIFPPP  K   +HT  PPP  P Q+L RPIVPYYP+KF PPPSRK+ 
Sbjct: 2   PSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPPQQKLERPIVPYYPYKFPPPPSRKQA 61

Query: 104 YPP-SYHVIPPPASPLSVKKLYISQARRSVPPPPPKEQPPYPW 146
            PP SYH  PPP  PL  KKLY+S+ RR+ PPPPPK+  PY W
Sbjct: 62  NPPLSYHAFPPPTLPLPAKKLYMSEVRRAAPPPPPKK--PYQW 102

[Close]

BLAST of CcUC08G150700.1 vs. TAIR 10
Match: AT2G43150.1 (Proline-rich extensin-like family protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.6e-05
Identity = 49/131 (37.40%), Postives = 58/131 (44.27%), Query Frame = 0


Query: 34  PSPWSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPP---SLPLQELGRPIVPYY 93
           P P+     PPP   P  PYY +  PPPP K      S PPP   S P   +  P  PYY
Sbjct: 53  PPPYEYKSPPPPVKSPPPPYY-YHSPPPPVK------SPPPPYVYSSPPPPVKSPPPPYY 112

Query: 94  PFKFLPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARRSVPPPPPKEQPPYPWGWTIP 153
                PPP  K P PP Y+  PPP         Y         PPPP + PP P+ +  P
Sbjct: 113 YHS--PPPPVKSPPPPYYYHSPPPPVKSPPPPYYYHS------PPPPVKSPPPPYYYHSP 168

Query: 154 ----RSPPPPF 158
               +SPPPP+
Sbjct: 173 PPPVKSPPPPY 168

The following BLAST results are available for this feature:

BLAST of CcUC08G150700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466986.1	1.6e-34	68.70	PREDICTED: extensin-3-like, partial [Cucumis melo]	[more]
KAA0058946.1	6.4e-28	64.52	extensin-3-like [Cucumis melo var. makuwa]	[more]
TYK10982.1	6.4e-28	64.52	extensin-3-like [Cucumis melo var. makuwa]	[more]
KAE8647164.1	3.5e-26	61.19	hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypotheti...	[more]
KAA0058948.1	2.5e-24	64.08	extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis ...	[more]

BLAST of CcUC08G150700.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G150700.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CSG8	7.6e-35	68.70	extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1	[more]
A0A0A0KD80	1.0e-34	62.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1	[more]
A0A5A7UXN4	3.1e-28	64.52	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00128...	[more]
A0A5D3CI60	3.1e-28	64.52	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G0014...	[more]
A0A5D3CVI1	1.2e-24	64.08	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00...	[more]

BLAST of CcUC08G150700.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43150.1	3.6e-05	37.40	Proline-rich extensin-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 81..97 score: 28.24 coord: 55..76 score: 31.82 coord: 34..46 score: 44.62 coord: 102..119 score: 35.56 coord: 135..157 score: 30.77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..82

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC08G150700	CcUC08G150700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC08G150700.1-exon	CcUC08G150700.1-exon-CicolChr08:18933327..18933800	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC08G150700.1-cds	CcUC08G150700.1-cds-CicolChr08:18933327..18933800	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC08G150700.1	CcUC08G150700.1-protein	polypeptide