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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTCGTGCACCTACGTCACTCGGCTCGCGCGCAACCTTGCCCCGTTATGTTATGGAAAAATTGAACTTCACAAAGTTCGAAAGAAAGGAATAAAAAAAAGTTTCTCTATGGCCTCCTCGTTTTGAGACATTATGGCTTTGGGGTCGACCCCGGTAACAAAGAAGAAATCCATAAAAACTGTAGGGGCGGACTGCTCTACATTCAGCCATGCCACTGTGACCCCCAAAGCGATCTTCTTCTAGTTGCAGGACGAAATCCGGCAGCCAGTTGTTGGCTCTAA mRNA sequence ATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAAAAAGAGATGGTTGTGGCGCGAAAAAGGAATAAAAAAAAGTTTCTCTATGGCCTCCTCGTTTTGAGACATTATGGCTTTGGGGTCGACCCCGGTAACAAAGAAGAAATCCATAAAAACTGTAGGGGCGGACTGCTCTACATTCAGCCATGCCACTGTGACCCCCAAAGCGATCTTCTTCTAGTTGCAGGACGAAATCCGGCAGCCAGTTGTTGGCTCTAA Coding sequence (CDS) ATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAAAAAGAGATGGTTGTGGCGCGAAAAAGGAATAAAAAAAAGTTTCTCTATGGCCTCCTCGTTTTGAGACATTATGGCTTTGGGGTCGACCCCGGTAACAAAGAAGAAATCCATAAAAACTGTAGGGGCGGACTGCTCTACATTCAGCCATGCCACTGTGACCCCCAAAGCGATCTTCTTCTAGTTGCAGGACGAAATCCGGCAGCCAGTTGTTGGCTCTAA Protein sequence MKQQASVRRTYKKEMVVARKRNKKKFLYGLLVLRHYGFGVDPGNKEEIHKNCRGGLLYIQPCHCDPQSDLLLVAGRNPAASCWL
Homology
BLAST of CcUC07G128770.1 vs. NCBI nr
Match: KAG2660525.1 (hypothetical protein PVAP13_1KG446905 [Panicum virgatum]) HSP 1 Score: 61.2 bits (147), Expect = 4.8e-06 Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0 Query: 18 ARKRNKKKFLYGLLVLRHYGFGVDPGNKEEIHKN 52 +R+R K+KF+Y L VLRHYGFGVDPGNK+ IHKN Sbjct: 102 SRQRKKEKFIYSLCVLRHYGFGVDPGNKKRIHKN 135
BLAST of CcUC07G128770.1 vs. NCBI nr
Match: XP_038981953.1 (uncharacterized protein LOC120110592 [Phoenix dactylifera]) HSP 1 Score: 60.5 bits (145), Expect = 8.2e-06 Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0 Query: 18 ARKRNKKKFLYGLLVLRHYGFGVDPGNKEEIHK 51 +R+R K+KFLY L VLRHYGFGVDPGNKE IHK Sbjct: 133 SRQRKKEKFLYSLFVLRHYGFGVDPGNKEGIHK 165
BLAST of CcUC07G128770.1 vs. NCBI nr
Match: GAU19220.1 (hypothetical protein TSUD_199020 [Trifolium subterraneum]) HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05 Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0 Query: 31 LVLRHYGFGVDPGNKEEIHKNCRGGLLYIQPCHCDPQSDLLLVAGRNPAAS 82 L L G ++P N + K RGGLLYIQP H DP+SDLLLVAGRNPAA+ Sbjct: 263 LFLPARGHEMNPENL--LIKRSRGGLLYIQPRHSDPRSDLLLVAGRNPAAA 311
BLAST of CcUC07G128770.1 vs. NCBI nr
Match: XP_040259771.1 (uncharacterized protein LOC109769357 [Aegilops tauschii subsp. strangulata]) HSP 1 Score: 58.5 bits (140), Expect = 3.1e-05 Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 0 Query: 20 KRNKKKFLYGLLVLRHYGFGVDPGNKEEIHKN 52 K K KFLY L VLRHYGFGVDPGNK+ IHKN Sbjct: 153 KEKKSKFLYSLFVLRHYGFGVDPGNKKGIHKN 184
BLAST of CcUC07G128770.1 vs. ExPASy TrEMBL
Match: A0A2Z6M2V0 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_199020 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 6.8e-06 Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0 Query: 31 LVLRHYGFGVDPGNKEEIHKNCRGGLLYIQPCHCDPQSDLLLVAGRNPAAS 82 L L G ++P N + K RGGLLYIQP H DP+SDLLLVAGRNPAA+ Sbjct: 263 LFLPARGHEMNPENL--LIKRSRGGLLYIQPRHSDPRSDLLLVAGRNPAAA 311
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG2660525.1 | 4.8e-06 | 73.53 | hypothetical protein PVAP13_1KG446905 [Panicum virgatum] | [more] |
XP_038981953.1 | 8.2e-06 | 78.79 | uncharacterized protein LOC120110592 [Phoenix dactylifera] | [more] |
GAU19220.1 | 1.4e-05 | 60.78 | hypothetical protein TSUD_199020 [Trifolium subterraneum] | [more] |
XP_040259771.1 | 3.1e-05 | 78.13 | uncharacterized protein LOC109769357 [Aegilops tauschii subsp. strangulata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2Z6M2V0 | 6.8e-06 | 60.78 | Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_199020 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CcUC07G128770.1-exon | CcUC07G128770.1-exon-CicolChr07:341490..341547 | exon |
CcUC07G128770.1-exon | CcUC07G128770.1-exon-CicolChr07:341635..341831 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CcUC07G128770.1-cds | CcUC07G128770.1-cds-CicolChr07:341490..341547 | CDS |
CcUC07G128770.1-cds | CcUC07G128770.1-cds-CicolChr07:341635..341831 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CcUC07G128770.1 | CcUC07G128770.1-protein | polypeptide |
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