CcUC06G122060.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G122060.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ty3/gypsy retrotransposon protein
Location	CicolChr06: 24398922 .. 24400626 (-)
Sequence length	252
RNA-Seq Expression	CcUC06G122060.1
Synteny	CcUC06G122060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCAAATGTAATTTACTTTCTGGTGTTCAATGGAGGTGATCTTTATAGCTAGATATTCTAAGTGAAGCATGATGTTGATATATATATATATATATATTGTAATAAGAAACCTAAGGAATATTTTGAAGAAAAAGAGTAAAATAAACGCCCTAAGGACTAGGGAGAAGGGAGCTCCCCCTCCTAAGAATATGTTATACTACCAATTATATTCCATTGTCAGAGGAAGGGTGAGGAGGGTACCAAGGCGTTAGAGGAAGGAAGTGCTATGTGATCCTGTGAAGGAAGTGGCGACCATTGTCTATTATGTTGTTGGGTGAAGGGAGTATATAGTTCGAGCTGAGGGAATGTTGAGGGCAGCTTGATTGTTAGTATTTTCTCTAGAGTGGGAAAGGTCTAAAATAGATCGGAGAGTTGTATTAGCCTTACGGCTACTCGTTTTTCTTCTGAATAACATTGTCTTGTAAGGAGATACCTTACATATTGGTATTAGAGCTTTCACCTTGGGAAAGCTTGGAAAAATGGCGCAAAAACAATTTGAAGAAAGGTTAGATGTGACCGACCAAGAGATTGTCGAAATCTATGCAGATATTTAGAAGTTTCCAACGATGGAAGAAACCTCTTCTTTAGCTCTAAGTCACTAATTATTGAGTATTCGGGCTGAAAAATAGAAATCGACGTCGGATGATACTTGAAAGATCCTGGCCAATCTTGTTTCCAAGGGAGCTGTAGCATAAAGCTGACCAAATGCTTCAATGATAATGGAAGATTCCAACGCGGAAAATAAACTGGGTGAAGAAATAGGCCAATCCTTTGGGCTGCCTTCAGAGCTCATATGAACAATGATAGATGGAAAGAGTGATAAAAGTGGAATCGATCAGAGTAAGTTCAGAAAGGTTGAAATGTCGTGTTTAATGGAATTGAACTTGATTCATGGTTATTTAGGGCTGATCGATACTTTCACATGCATGAGTTGATAGAATTAGGAGAAGATGACTATGGTTGTGATAAGTTTCAAAGGAGTCACGCTAGATTGGTATCATGCCAAGGAAGAAAGATACTTGTTCAAGTTCTAGAAGAACTTGAAGATGCAATTACTCGAATGATTTCATCCTTCACGGAAAGGGACGATTTGTGGACAATTTTTATTGATCAAGCAAGTGACCATGGTGGAGTACTGGAATCGGTTTTATAAACTGGTGATGCCACTCCCACACTTATCGGATGGGGTTTTAGAAGAGACATTTATGAATGGGTTGCTACCTTGGGTCAAAGCAGAGTTTGAGTGATGGGAGCCTATTGGGTAGGCGAACATGATGAAAATAGCCTGAAGCATTGAGGATCATGGACTAACCTGTGTGAAGCTTGTCTTATCAGCCCACCGAGGGAGGTAAGGCCCAAGATCAAACTCTTACTTCTAAAGTCACTTTACCAAATGCAAGGTCAAAGAAACACGAGAACTTTAGATTTTAGTAGTTCATGAAAATGCGGAGGAATCAGAGTTGATTGAAGAGGGAGATGAATCGGGTGAGAAGGTCAAGTTGCAAGCGGCTAACATGGCGATTATTGTGGAGTTATCCTTGAATTCAGTGGTTGGGTTGAGAAACCCAGGGACAATCAAGTTGGGAGGGATGATCCCCGAGTACCGAGTGGTGGTGCTTGTAGATTGTGGAGTCCCACACAACTTCATTGCACAACAATAA

mRNA sequence

ATGGTTGCAAATGTAATTTACTTTCTGGTGTTCAATGGAGAGGAATCAGAGTTGATTGAAGAGGGAGATGAATCGGGTGAGAAGGTCAAGTTGCAAGCGGCTAACATGGCGATTATTGTGGAGTTATCCTTGAATTCAGTGGTTGGGTTGAGAAACCCAGGGACAATCAAGTTGGGAGGGATGATCCCCGAGTACCGAGTGGTGGTGCTTGTAGATTGTGGAGTCCCACACAACTTCATTGCACAACAATAA

Coding sequence (CDS)

ATGGTTGCAAATGTAATTTACTTTCTGGTGTTCAATGGAGAGGAATCAGAGTTGATTGAAGAGGGAGATGAATCGGGTGAGAAGGTCAAGTTGCAAGCGGCTAACATGGCGATTATTGTGGAGTTATCCTTGAATTCAGTGGTTGGGTTGAGAAACCCAGGGACAATCAAGTTGGGAGGGATGATCCCCGAGTACCGAGTGGTGGTGCTTGTAGATTGTGGAGTCCCACACAACTTCATTGCACAACAATAA

Protein sequence

MVANVIYFLVFNGEESELIEEGDESGEKVKLQAANMAIIVELSLNSVVGLRNPGTIKLGGMIPEYRVVVLVDCGVPHNFIAQQ

Homology

[Close]

BLAST of CcUC06G122060.1 vs. NCBI nr
Match: KAA0062226.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 12  NGEESELIEEGDE---SGEKVKLQAANMAIIVELSLNSVVGLRNPGTIKLGGMIPEYRVV 71
           NGEE E+IEE  E   + E V    A   + +ELS+NSVVGL NPGT+K+ G + + +VV
Sbjct: 339 NGEEFEIIEEDGEEEVADENVIEVGAVKNLNIELSINSVVGLTNPGTMKVKGKVKDEQVV 398

Query: 72  VLVDCGVPHNFIAQQ 84
           VL+DCG  HNFI+++
Sbjct: 399 VLIDCGATHNFISEK 413

[Close]

BLAST of CcUC06G122060.1 vs. NCBI nr
Match: KAA0053639.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK00808.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 13  GEESELIEEG--DESGEKVKLQAANMA-IIVELSLNSVVGLRNPGTIKLGGMIPEYRVVV 72
           GEE E++EE   D   E  +++  N+  + +ELSLNSVVGL NPGT+K+ G + E  VV+
Sbjct: 57  GEELEIVEEEFFDAEAEMKQVEVQNVENLNIELSLNSVVGLTNPGTMKVKGRVGEEEVVI 116

Query: 73  LVDCGVPHNFIAQQ 84
           L+DCG  HNFIA++
Sbjct: 117 LIDCGATHNFIAEK 130

[Close]

BLAST of CcUC06G122060.1 vs. NCBI nr
Match: TYK14806.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 13  GEESELIEEG--DESGEKVKLQAANMA-IIVELSLNSVVGLRNPGTIKLGGMIPEYRVVV 72
           GEE E++EE   D   E  +++  N+  + +ELSLNSVVGL NPGT+K+ G + E  VV+
Sbjct: 67  GEELEIVEEEFFDAEAEMKQVEVQNVENLNIELSLNSVVGLTNPGTMKVKGRVGEEEVVI 126

Query: 73  LVDCGVPHNFIAQQ 84
           L+DCG  HNFIA++
Sbjct: 127 LIDCGATHNFIAEK 140

[Close]

BLAST of CcUC06G122060.1 vs. NCBI nr
Match: KAA0062046.1 (ty3-gypsy retroelement transposase [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 12 NGEESELIEEGDE---SGEKVKLQAANMAIIVELSLNSVVGLRNPGTIKLGGMIPEYRVV 71
          NGEE E+IEE  E   + E V    A   + +ELS+NSVVGL NPGT+K+ G + + +VV
Sbjct: 7  NGEEFEIIEEDGEEEVTDENVIEVGAVENLNIELSINSVVGLTNPGTMKVKGKVKDEQVV 66

Query: 72 VLVDCGVPHNFIAQQ 84
          VL+DCG  HNFI+++
Sbjct: 67 VLIDCGATHNFISKK 81

[Close]

BLAST of CcUC06G122060.1 vs. NCBI nr
Match: KAA0067256.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK10865.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 13 GEESELIEEG--DESGEKVKLQAANMA-IIVELSLNSVVGLRNPGTIKLGGMIPEYRVVV 72
          GEE E++EE   D   E  +++  N+  + +ELSLNSVVGL NPGT+K+ G + E  VV+
Sbjct: 8  GEELEIVEEEFFDAETEMKQVEVQNVENLNIELSLNSVVGLTNPGTMKVKGRVGEEEVVI 67

Query: 73 LVDCGVPHNFIAQQ 84
          L+DCG  HNFIA++
Sbjct: 68 LIDCGATHNFIAEK 81

[Close]

BLAST of CcUC06G122060.1 vs. ExPASy TrEMBL
Match: A0A5A7V723 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00260 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 12  NGEESELIEEGDE---SGEKVKLQAANMAIIVELSLNSVVGLRNPGTIKLGGMIPEYRVV 71
           NGEE E+IEE  E   + E V    A   + +ELS+NSVVGL NPGT+K+ G + + +VV
Sbjct: 339 NGEEFEIIEEDGEEEVADENVIEVGAVKNLNIELSINSVVGLTNPGTMKVKGKVKDEQVV 398

Query: 72  VLVDCGVPHNFIAQQ 84
           VL+DCG  HNFI+++
Sbjct: 399 VLIDCGATHNFISEK 413

[Close]

BLAST of CcUC06G122060.1 vs. ExPASy TrEMBL
Match: A0A5A7UJK0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00090 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 13  GEESELIEEG--DESGEKVKLQAANMA-IIVELSLNSVVGLRNPGTIKLGGMIPEYRVVV 72
           GEE E++EE   D   E  +++  N+  + +ELSLNSVVGL NPGT+K+ G + E  VV+
Sbjct: 57  GEELEIVEEEFFDAEAEMKQVEVQNVENLNIELSLNSVVGLTNPGTMKVKGRVGEEEVVI 116

Query: 73  LVDCGVPHNFIAQQ 84
           L+DCG  HNFIA++
Sbjct: 117 LIDCGATHNFIAEK 130

[Close]

BLAST of CcUC06G122060.1 vs. ExPASy TrEMBL
Match: A0A5D3CWK0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00050 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 13  GEESELIEEG--DESGEKVKLQAANMA-IIVELSLNSVVGLRNPGTIKLGGMIPEYRVVV 72
           GEE E++EE   D   E  +++  N+  + +ELSLNSVVGL NPGT+K+ G + E  VV+
Sbjct: 67  GEELEIVEEEFFDAEAEMKQVEVQNVENLNIELSLNSVVGLTNPGTMKVKGRVGEEEVVI 126

Query: 73  LVDCGVPHNFIAQQ 84
           L+DCG  HNFIA++
Sbjct: 127 LIDCGATHNFIAEK 140

[Close]

BLAST of CcUC06G122060.1 vs. ExPASy TrEMBL
Match: A0A5A7V6C8 (Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003860 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 12 NGEESELIEEGDE---SGEKVKLQAANMAIIVELSLNSVVGLRNPGTIKLGGMIPEYRVV 71
          NGEE E+IEE  E   + E V    A   + +ELS+NSVVGL NPGT+K+ G + + +VV
Sbjct: 7  NGEEFEIIEEDGEEEVTDENVIEVGAVENLNIELSINSVVGLTNPGTMKVKGKVKDEQVV 66

Query: 72 VLVDCGVPHNFIAQQ 84
          VL+DCG  HNFI+++
Sbjct: 67 VLIDCGATHNFISKK 81

[Close]

BLAST of CcUC06G122060.1 vs. ExPASy TrEMBL
Match: A0A5A7VLC6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00370 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 13 GEESELIEEG--DESGEKVKLQAANMA-IIVELSLNSVVGLRNPGTIKLGGMIPEYRVVV 72
          GEE E++EE   D   E  +++  N+  + +ELSLNSVVGL NPGT+K+ G + E  VV+
Sbjct: 8  GEELEIVEEEFFDAETEMKQVEVQNVENLNIELSLNSVVGLTNPGTMKVKGRVGEEEVVI 67

Query: 73 LVDCGVPHNFIAQQ 84
          L+DCG  HNFIA++
Sbjct: 68 LIDCGATHNFIAEK 81

The following BLAST results are available for this feature:

BLAST of CcUC06G122060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062226.1	1.6e-09	50.67	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0053639.1	2.1e-09	50.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK00808.1 Ty3/gyp...	[more]
TYK14806.1	2.1e-09	50.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062046.1	2.7e-09	50.67	ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]	[more]
KAA0067256.1	3.5e-09	50.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK10865.1 Ty3/gyp...	[more]

BLAST of CcUC06G122060.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G122060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V723	7.7e-10	50.67	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UJK0	1.0e-09	50.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CWK0	1.0e-09	50.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V6C8	1.3e-09	50.67	Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7VLC6	1.7e-09	50.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CcUC06G122060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G122060	CcUC06G122060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G122060.1-exon	CcUC06G122060.1-exon-CicolChr06:24398922..24399133	exon
CcUC06G122060.1-exon	CcUC06G122060.1-exon-CicolChr06:24400587..24400626	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G122060.1-cds	CcUC06G122060.1-cds-CicolChr06:24398922..24399133	CDS
CcUC06G122060.1-cds	CcUC06G122060.1-cds-CicolChr06:24400587..24400626	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G122060.1	CcUC06G122060.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding