CcUC05G106610.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G106610.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr05: 33742895 .. 33745911 (-)
Sequence length	540
RNA-Seq Expression	CcUC05G106610.1
Synteny	CcUC05G106610.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGTTATACATTTTGTGCCTATGTAAGTTAAACAGTGTCCTGGTGGGAGGTCACTTGAGGTCCTGATGCTATTGCAAATTGCAGCCCCCTGTGCCGTCCTGATTGTAGCACAAAAGCAACTTGTGCTGCACCCAAGGCTGCAGCCTCCCGTTCCTCAAATTAGGCAAAACATAAAAAGGAAAAAGTAACATTTACTACAAAAATTTATCCTTGAGTTAATAAGTTGACAGTAATTTGGGAGATAATATGCACCTGTCGTCGTTGTCGACGTTGCAAGATGTTGACTGCACAAGCCATAATGTAACAGGGCAAGAGAAAACCAGCTGCTCGAAGCAAGAAAATCTGAATGGTACGGTTAAAAACAATGTCCACAAGATGAGAAATGTCAGGAAAACTGCAGGAGATTGTTGTCCATTCCAGATTCAAACAATGAACTCGAACTTACAGAGAAGAAAGCAGACAAGTAATCGTCGCCATCAGGATCTGTGACTTCAAGTGCATGACGTAAGAAAAGTAGGATCATGAGCTGCGATATTGAAATCAAGAAAACGATTTATCCCAATTGAATGGAAAAACATCAGCAAACAGGCTCTTTAATTGATTTATTTTCTTTGAGAATATGAAATTGCAATGCCAATTTTGTAAGAGAGTAATTCGAAGACAAGTATGAAAAAACCTTCAAATGTGACGTATTAGCGCACTGGTGTATTGATATTGACATGACTTTGTGGAGAGTGTATGATAATAGTACGTTTCTTGTTTATTCTACTGAGAATTCTTATGTGCGGTATCAAGCAAGAAACTTACAATAAGAGCAGCTGCTCGGCAAAATGCAGCTCCACTGGCCTCGGAAGCAGCATATTCATCATACTCAGCTTCCAATAAATTATGTTCAGCCTCTGCAATAGCCAAGAGGCGAGGATCGTGTAAATTCAAAGGGGTGCCAGTGATGGTCCACCCTCCCCTGCAGAAAAAAGAATCCAAACAAAGAATAGGACATGTTTAGCTTAATATCTCAAATGCAAAATATCGGAAAGCTTACCACAATTTTTTCAGTAAACAAAAAATTTCATAAGGTACCCGATGTCAATGGATGTTTCTTCAATGCGAGGGGGAGGTGGTGGAGCTGTATAACCAGGTTGGTAAGGCTGTTCATCATATGCAAGCGTATAAAATCAGATAAGTTGAAACCTCTAAAACCATAACATTCAAAGTAGCTGAATTGTTTCCATATACATATGCGTCTACACTCATCATTTAAATTATTTTATCTTTTAATGGTCAACTTGTAGCATTTCTTGACTTCATTTTTTAATGTAAATATCATTAAGTAAAACATGTTTTTCTTTCAACCAAAACAAGCCAAGATGCTTTCACCAGATAGTGAATATTGAATGGAGTAACATGCGTCCACATAACAAGTTGAATGCACGTGCACACACTCATATAAATATATTGATAAGAACCTAGCTTTCATGAGAAAATATGAAAGAATAAATAAGAGCAATACAAAAACGACGACCCAACAAAGGGAGTTCATTCAAAGCTAGGGACTCCGGTCCAAAAGAATCAATCAAGCTAATAACTGCACAAAGCCTCAGAAGTAGAAGCCGCAACGAAGCATCCAATCTAACACTATCGAGCACCTCAAACCAAGGTCAATTGACATTTCTAAAAATTCTACTATTTCTTTCAACCCAAACACCCTACACCACAGCGAAGCAACAAGTTTGCCGAAGAACCCTGGCTTTATCCCAAAAAGAGGGACAAGTGCAACAACATCTCTTCTAGCATAACTTTGATGTCAAATGCGCATATGATTCCAAGAACTTAAAATACCCAAGTAAAATCAAGAATGTGAACTTACCTGATGACAAATCTCGCAAATTATATCCCCTTTCTCATTGCACCAAAGCTGTATACACTTCCGATGAGCATACTGAGAAAGCAACCATTGTTAACATCTCATCTAAATCGTATTGCAACACAAGCAATAAATGTGTCATTAGATATATTTGAGATAAACAAATCAGGAGAAATATAAACAGGCATTTTACCATAAAATAGAACATTCCTATCAAACTTCCTCAGATTTATGGCATACATTAAACAACTGGTTTCCGTAAATTTTCACATCATCACCAACTTAATTAGCCAACCACGATGGCTAATGACTGCAATTTGAACTACAAAAAACAACTGAGCTGCTAACCTTATGACATATATCAAGCTCAATAACCCCTATATATTTGTACTTCAAATTACTTGTTGATAACTATGCAATCCGATAGGAACTATATCATTTGCGATTTGCAACGAACCCTAGAGCCGAAACATTTAGCAGTGACACAAATTTACAAAGAAACTATAAAGTTTTACAATACTTAATTGATCAATCATCTGTACCTTAAGACTGCCACTACAGGCACATGGAGTTTCCAGCTTCCTAATTACATCCTCATCCTGACAAATGCGACACTCCGCTGTCTGAATCAATGAATCATCCTCTCCATCCAAACCCTCATTTTCTTGTGCTCTCTCATCAACATTGGAAGTGGAGGTTGTTGAAGAAGATAAACCCACCGAGTCGGTCTCCAAATCCCCACCAACCGGCAAGAGAGGAACAACCTCAGTCGGATTGGGGACGGAATCAACGGTTTGCGGCCGAATTAATCGGTCCACATACAGAACGAGATGATCGCTCATAGCTTCTCAAACGGAAATGAAAGACCTAAGTGGGCAAAAACAAACCACATAGGCTACAGGAATTCAGAAGAAAAAGGAAAAAACTGACTCAAAGAAGAAGAAAACAGGGGCGTACTAGTAGTAATCGGAGAAGAACCAGAATCCCCAGTGATCGCGCTGAGAAGGCAGCGGACCGGTGGGATTCCGGAGCAGAGTTGAAGAGAAGAGGAAGACAAATGAGGGATTTAATCGTATGGAAGTGGGTTCGATCAAATTGGGGAAAAATCCAAGAATATACGTGTGGTAATGCAATGAAATCGGGTTAG

mRNA sequence

ATGAAGAGTAATTTGGGAGATAATATGCACCTGTCGTCGTTGTCGACGTTGCAAGATGTTGACTGCACAAGCCATAATGTAACAGGGCAAGAGAAAACCAGCTGCTCGAAGCAAGAAAATCTGAATGGTACGGTTAAAAACAATGTCCACAAGATGAGAAATGTCAGGAAAACTGCAGGAGATTGTTGTCCATTCCAGATTCAAACAATGAACTCGAACTTACAGAGAAGAAAGCAGACAATGGAGGTTGTTGAAGAAGATAAACCCACCGAGTCGGTCTCCAAATCCCCACCAACCGGCAAGAGAGGAACAACCTCAGTCGGATTGGGGACGGAATCAACGGGGCGTACTAGTAGTAATCGGAGAAGAACCAGAATCCCCAGTGATCGCGCTGAGAAGGCAGCGGACCGGTGGGATTCCGGAGCAGAGTTGAAGAGAAGAGGAAGACAAATGAGGGATTTAATCGTATGGAAGTGGGTTCGATCAAATTGGGGAAAAATCCAAGAATATACGTGTGGTAATGCAATGAAATCGGGTTAG

Coding sequence (CDS)

ATGAAGAGTAATTTGGGAGATAATATGCACCTGTCGTCGTTGTCGACGTTGCAAGATGTTGACTGCACAAGCCATAATGTAACAGGGCAAGAGAAAACCAGCTGCTCGAAGCAAGAAAATCTGAATGGTACGGTTAAAAACAATGTCCACAAGATGAGAAATGTCAGGAAAACTGCAGGAGATTGTTGTCCATTCCAGATTCAAACAATGAACTCGAACTTACAGAGAAGAAAGCAGACAATGGAGGTTGTTGAAGAAGATAAACCCACCGAGTCGGTCTCCAAATCCCCACCAACCGGCAAGAGAGGAACAACCTCAGTCGGATTGGGGACGGAATCAACGGGGCGTACTAGTAGTAATCGGAGAAGAACCAGAATCCCCAGTGATCGCGCTGAGAAGGCAGCGGACCGGTGGGATTCCGGAGCAGAGTTGAAGAGAAGAGGAAGACAAATGAGGGATTTAATCGTATGGAAGTGGGTTCGATCAAATTGGGGAAAAATCCAAGAATATACGTGTGGTAATGCAATGAAATCGGGTTAG

Protein sequence

MKSNLGDNMHLSSLSTLQDVDCTSHNVTGQEKTSCSKQENLNGTVKNNVHKMRNVRKTAGDCCPFQIQTMNSNLQRRKQTMEVVEEDKPTESVSKSPPTGKRGTTSVGLGTESTGRTSSNRRRTRIPSDRAEKAADRWDSGAELKRRGRQMRDLIVWKWVRSNWGKIQEYTCGNAMKSG

Homology

The following BLAST results are available for this feature:

BLAST of CcUC05G106610.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G106610.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G106610.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G106610.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..139

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G106610	CcUC05G106610	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G106610.1-exon	CcUC05G106610.1-exon-CicolChr05:33742895..33743092	exon
CcUC05G106610.1-exon	CcUC05G106610.1-exon-CicolChr05:33743250..33743350	exon
CcUC05G106610.1-exon	CcUC05G106610.1-exon-CicolChr05:33745443..33745675	exon
CcUC05G106610.1-exon	CcUC05G106610.1-exon-CicolChr05:33745904..33745911	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G106610.1-cds	CcUC05G106610.1-cds-CicolChr05:33742895..33743092	CDS
CcUC05G106610.1-cds	CcUC05G106610.1-cds-CicolChr05:33743250..33743350	CDS
CcUC05G106610.1-cds	CcUC05G106610.1-cds-CicolChr05:33745443..33745675	CDS
CcUC05G106610.1-cds	CcUC05G106610.1-cds-CicolChr05:33745904..33745911	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G106610.1	CcUC05G106610.1-protein	polypeptide