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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGAAGTGGGTCGATTCATTGTTCCTATTGTTCTTACTGCTCATACTGCTACTGTATATATTTTTTTAAATCATAATTTTCGATTTCTGATGAGATTTGCAGCATAATCGATATTTCTTTTTCTCTTTATCTGTTCTGTTTCTGAAAAATCGAACGATGTTGGGTATGGATTGGTGATCTCTTTCGCTTTAATCTGGTTATTGTTTTTCTCTCTTTCAACCTCTGAAGGACAGGGCTCAGAGTTTTCTCCATCTGGGTCTGTGCTTTTTTTTGGAACCGGGAAAGAAGTTGAAGACGGTGGTTGATCAGTAGATTTTATGTCGGCTTTGTTCATATTGGCAGTGATTGGGGCTCTGTTGAAGCTCTGGTTTTCGTCTTCTCTCTGCTGCTTCTGGCAGAGGTTGATTCAAGTGCAACAATCCTATTCAATGCGTTTGAGGTTAAAAAGGCAAGACAATTTTTCTAGTTTCTTTCGTTTTCTTTTATTTTCTATAGGGTTTTTTTTTTTTTTTTTTTTTTTTGTTGGACTAATTCTCGATTGGGTTGGGTTTCTTTTGCAGGACTTGTTCTGGAGTAAAGTTCTCTTGGGCTTTTCGTATAAAACGATTTCTACTTCGTTTCTATACCTTACACTTAAGTTATTGTGATTCTCAGAGATCTTCCATTGTTTCCATTTGA mRNA sequence ATGGGAAGACAGGGCTCAGAGTTTTCTCCATCTGGGTCTGTGCTTTTTTTTGGAACCGGGAAAGAAGTTGAAGACGTGATTGGGGCTCTGTTGAAGCTCTGGTTTTCGTCTTCTCTCTGCTGCTTCTGGCAGAGGTTGATTCAAGTGCAACAATCCTATTCAATGCGTTTGAGGTTAAAAAGGCAAGACAATTTTTCTAGTTTCTTTCGTTTTCTTTTATTTTCTATAGGGACTTGTTCTGGAGTAAAGTTCTCTTGGGCTTTTCGTATAAAACGATTTCTACTTCGTTTCTATACCTTACACTTAAGTTATTGTGATTCTCAGAGATCTTCCATTGTTTCCATTTGA Coding sequence (CDS) ATGGGAAGACAGGGCTCAGAGTTTTCTCCATCTGGGTCTGTGCTTTTTTTTGGAACCGGGAAAGAAGTTGAAGACGTGATTGGGGCTCTGTTGAAGCTCTGGTTTTCGTCTTCTCTCTGCTGCTTCTGGCAGAGGTTGATTCAAGTGCAACAATCCTATTCAATGCGTTTGAGGTTAAAAAGGCAAGACAATTTTTCTAGTTTCTTTCGTTTTCTTTTATTTTCTATAGGGACTTGTTCTGGAGTAAAGTTCTCTTGGGCTTTTCGTATAAAACGATTTCTACTTCGTTTCTATACCTTACACTTAAGTTATTGTGATTCTCAGAGATCTTCCATTGTTTCCATTTGA Protein sequence MGRQGSEFSPSGSVLFFGTGKEVEDVIGALLKLWFSSSLCCFWQRLIQVQQSYSMRLRLKRQDNFSSFFRFLLFSIGTCSGVKFSWAFRIKRFLLRFYTLHLSYCDSQRSSIVSI
Homology
BLAST of CcUC05G105000.1 vs. NCBI nr
Match: XP_022968247.1 (ethylene-responsive transcription factor ERF118-like [Cucurbita maxima]) HSP 1 Score: 102.4 bits (254), Expect = 2.6e-18 Identity = 58/94 (61.70%), Postives = 63/94 (67.02%), Query Frame = 0
Query: 26 VIGALLKLWFSS----SLCCFWQRLIQVQQSYSMRLRLKRQDNFSSFFRFLLFSIGTCSG 85
VIGALL+LWFSS SLCCFWQRLI VQQS+SM R K TCSG
Sbjct: 9 VIGALLQLWFSSSAFFSLCCFWQRLILVQQSFSMLFRFK----------------WTCSG 68
Query: 86 VKFSWAFRIKRFLLRFYTLHLSYCDSQRSSIVSI 116
VKFSW FRIK+FLLRF TLH DSQ+SSIVS+
Sbjct: 69 VKFSWTFRIKQFLLRFSTLHFRCFDSQKSSIVSV 86
BLAST of CcUC05G105000.1 vs. NCBI nr
Match: KAG6573970.1 (hypothetical protein SDJN03_27857, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 89.4 bits (220), Expect = 2.3e-14 Identity = 54/94 (57.45%), Postives = 59/94 (62.77%), Query Frame = 0
Query: 26 VIGALLKLWFSS----SLCCFWQRLIQVQQSYSMRLRLKRQDNFSSFFRFLLFSIGTCSG 85
VI ALL+LWFSS SLC FWQRLI VQQS+SM R KR TCSG
Sbjct: 9 VIRALLQLWFSSSVSFSLCWFWQRLILVQQSFSMLFRFKR----------------TCSG 68
Query: 86 VKFSWAFRIKRFLLRFYTLHLSYCDSQRSSIVSI 116
VK SW RIK+FLLRF TLH DS +SSIVS+
Sbjct: 69 VKLSWTSRIKQFLLRFSTLHFRCFDSLKSSIVSV 86
BLAST of CcUC05G105000.1 vs. ExPASy TrEMBL
Match: A0A6J1HT39 (ethylene-responsive transcription factor ERF118-like OS=Cucurbita maxima OX=3661 GN=LOC111467540 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18 Identity = 58/94 (61.70%), Postives = 63/94 (67.02%), Query Frame = 0
Query: 26 VIGALLKLWFSS----SLCCFWQRLIQVQQSYSMRLRLKRQDNFSSFFRFLLFSIGTCSG 85
VIGALL+LWFSS SLCCFWQRLI VQQS+SM R K TCSG
Sbjct: 9 VIGALLQLWFSSSAFFSLCCFWQRLILVQQSFSMLFRFK----------------WTCSG 68
Query: 86 VKFSWAFRIKRFLLRFYTLHLSYCDSQRSSIVSI 116
VKFSW FRIK+FLLRF TLH DSQ+SSIVS+
Sbjct: 69 VKFSWTFRIKQFLLRFSTLHFRCFDSQKSSIVSV 86
BLAST of CcUC05G105000.1 vs. ExPASy TrEMBL
Match: A0A314XMT5 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_11113 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 6.7e-04 Identity = 38/88 (43.18%), Postives = 42/88 (47.73%), Query Frame = 0
Query: 26 VIGALLKLWFSSS-------------LCCFWQRLIQVQQSYSMRLRLKRQDNFSSFFRFL 85
VIGALLKLW +S LCCFWQRL V S SM LR KR
Sbjct: 9 VIGALLKLWILTSSSFSAYLAICFMLLCCFWQRLNPVISSVSMSLRPKR----------- 68
Query: 86 LFSIGTCSGVKFSWAFRIKRFLLRFYTL 101
TCSG+++ AF IKRF F L
Sbjct: 69 -----TCSGLQYFGAFHIKRFSFLFLFL 80
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022968247.1 | 2.6e-18 | 61.70 | ethylene-responsive transcription factor ERF118-like [Cucurbita maxima] | [more] |
| KAG6573970.1 | 2.3e-14 | 57.45 | hypothetical protein SDJN03_27857, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1HT39 | 1.3e-18 | 61.70 | ethylene-responsive transcription factor ERF118-like OS=Cucurbita maxima OX=3661... | [more] |
| A0A314XMT5 | 6.7e-04 | 43.18 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_111... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC05G105000.1-exon | CcUC05G105000.1-exon-CicolChr05:32532854..32532971 | exon |
| CcUC05G105000.1-exon | CcUC05G105000.1-exon-CicolChr05:32533036..32533189 | exon |
| CcUC05G105000.1-exon | CcUC05G105000.1-exon-CicolChr05:32533235..32533303 | exon |
| CcUC05G105000.1-exon | CcUC05G105000.1-exon-CicolChr05:32533527..32533533 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC05G105000.1-cds | CcUC05G105000.1-cds-CicolChr05:32532854..32532971 | CDS |
| CcUC05G105000.1-cds | CcUC05G105000.1-cds-CicolChr05:32533036..32533189 | CDS |
| CcUC05G105000.1-cds | CcUC05G105000.1-cds-CicolChr05:32533235..32533303 | CDS |
| CcUC05G105000.1-cds | CcUC05G105000.1-cds-CicolChr05:32533527..32533533 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC05G105000.1 | CcUC05G105000.1-protein | polypeptide |
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