CcUC02G040050.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G040050.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 35321275 .. 35322116 (-)
Sequence length	529
RNA-Seq Expression	CcUC02G040050.1
Synteny	CcUC02G040050.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTACCTCTTCTTTGTGTTGTTGCTTAAATTCAAATTCTTAGTGATGAAGATTCTTGTAGAGTAGTGGGATGATGGTTTCTACCGACTTAATAATTCTCCTCCGTTCATTCTTCTCTCATTTGAATAATGTTCTCTAATGCAAGGCCTGAAAGTTCGTCGGTGCCAGCCTAAAAGGCTAGATGCAATGCTGAAATGAGCCTTTGGTTTGGATGAAAGTCCAGATCAACCATTTCTGTTGATTGGAGTGACTGATTGACTGAAAATTTTGTTTTGTGTTGGAGCAAGAGCTGAGCTGAGCAGATGGAAGTAGGAAATGTGGGAGAGGAGGCTGGGGCATGCGTAATGAGGTGGAAGAGATGAGAGGGAGGGTAGGTATCAGTAAATGAAGTTGGTCGTTGGTTGTATGCTTATAGGTTTGGTTTTCAGTTCTAGAAGCCAGAACTCAGAGTTTGTCGGTTAGGTCTTTCTTGCAATTCTCATTTCTCTCTATAAATTTATTTCCACCAACCTCAGTTGGAATGTGTTGCTTGCCCTCTACTAATACCTGGTTAGTTTCAAACTTCTAGTCGAGCAAGATATGGTTGAGTTTGTCACATTCAAGGTTTAGTGATGGTGGTGCATTGGGTGATGATTAAGTCACATGGTTATTTCTCTTCTTAATCTTGTCCTCTACATCCTCTTGGCTCTTTACATTCACTATCTCTATGCCATGGACAGAAGAGAGAACACAGAGAGGAATGCTAATCTCGAGTCAAACTATACAAGTCGATTAGCTCTCTTAACAAAAAGCTCCCTGTTGGACAACACTAGCCAGAAATCTGACCCAGCCATGTATCCTTGA

mRNA sequence

AGTACCTCTTCTTTGTGTTGTTGCTTAAATTCAAATTCTTAGTGATGAAGATTCTTGTAGAGTAGTGGGATGATGGTTTCTACCGACTTAATAATTCTCCTCCGTTCATTCTTCTCTCATTTGAATAATGTTCTCTAATGCAAGGCCTGAAAGTTCGTCGGTGCCAGCCTAAAAGGCTAGATGCAATGCTGAAATGAGCCTTTGGTTTGGATGAAAGTCCAGATCAACCATTTCTGTTGATTGGAGTGACTGATTGACTGAAAATTTTGTTTTGTGTTGGAGCAAGAGCTGAGCTGAGCAGATGGAAGTAGGAAATGTGGGAGAGGAGGCTGGGGCATGCGTAATGAGTCTTGTCCTCTACATCCTCTTGGCTCTTTACATTCACTATCTCTATGCCATGGACAGAAGAGAGAACACAGAGAGGAATGCTAATCTCGAGTCAAACTATACAAGTCGATTAGCTCTCTTAACAAAAAGCTCCCTGTTGGACAACACTAGCCAGAAATCTGACCCAGCCATGTATCCTTGA

Coding sequence (CDS)

ATGGAAGTAGGAAATGTGGGAGAGGAGGCTGGGGCATGCGTAATGAGTCTTGTCCTCTACATCCTCTTGGCTCTTTACATTCACTATCTCTATGCCATGGACAGAAGAGAGAACACAGAGAGGAATGCTAATCTCGAGTCAAACTATACAAGTCGATTAGCTCTCTTAACAAAAAGCTCCCTGTTGGACAACACTAGCCAGAAATCTGACCCAGCCATGTATCCTTGA

Protein sequence

MEVGNVGEEAGACVMSLVLYILLALYIHYLYAMDRRENTERNANLESNYTSRLALLTKSSLLDNTSQKSDPAMYP

Homology

The following BLAST results are available for this feature:

BLAST of CcUC02G040050.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G040050.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G040050.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G040050.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G040050	CcUC02G040050	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G040050.1-exon	CcUC02G040050.1-exon-CicolChr02:35321275..35321455	exon
CcUC02G040050.1-exon	CcUC02G040050.1-exon-CicolChr02:35321769..35322116	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G040050.1-cds	CcUC02G040050.1-cds-CicolChr02:35321275..35321455	CDS
CcUC02G040050.1-cds	CcUC02G040050.1-cds-CicolChr02:35321769..35321815	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G040050.1-five_prime_utr	CcUC02G040050.1-five_prime_utr-CicolChr02:35321816..35322116	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G040050.1	CcUC02G040050.1-protein	polypeptide