CcUC02G038570.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G038570.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LOB domain-containing protein
Location	CicolChr02: 33977982 .. 33979520 (+)
Sequence length	996
RNA-Seq Expression	CcUC02G038570.1
Synteny	CcUC02G038570.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTGCTCCGATTCGTCTGAAATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTTAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGTCTTTTCATCTGCCTTTAAATTTCTCTGAATTCCTGATTTCTGTTTTACTTCAACTCTGAATTTCTAACTGTTTGGTTAGTTTGAAGATTGAATCAAATGAACTAGGGCTGAAAATGTGCATCGATTTGGTACAAACTAACGACCTTGTTGCAATGAGATTTGGAGTATTAAGTTTCTTAAAATCGTCTTTTCTTAAGATTTTTGTTGCAAGAGCCGCCGTAAATTATATGAGACTTTTCTTTCTAACATTTTGTTTGATCCTAAACTTTCTTCATCATATCTTTTCAGCCACTTAACCTACTAAACTTTACATTATGTTTCTGTTAACATTGTTCACCTTATTTGTTATACAATATAAATTTTCGAGGTGTGGAAGTTTGAAAAAGTAGTATTCTCAGACCAACTCAAAAGCTAAGCCTGATGGGATTTTCATTTCTCATTTTCCTCTATATGAATAGTTAAATTTACAACACAAGAAGAGCTCTCTGCAAAAACCCATTTGTCATGAACTGAAATTTCTCTTGGGTCATTGTTTAAACAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGAATCATCTGACCTTTCTTTTTTTAGTGTATGCATTTAAGGTGTTTGATAAAATGTTCCGGTGAAGTTTCTCCAAACTTTTAAGCCAATTTGTGGTTGTGGGTAGGAGAAACTTTGTGGAAAATACAACAGAAATCTAGTTTCTTGTTATGATTAAATTACTAATGAAATGGACAAAACAAAAGGAGGGAAACCAAAGCTTTATTAGGGATATGTCTTTATCCATAATCTCTTTGTTTAGGCCAAAAAAGAAAGAGACAAAAAAAAGAAAAGAAAAAAGAAAGAAGGGGAAAAGCAGATGCCTTGGTATAATCAGTGTGAAAGAGATGCATACCAATTGCTTAACCATCTCTCCTTTGAAATAAAATATTCATTAACAAGTCAG

mRNA sequence

TTTTTTTTTGCTCCGATTCGTCTGAAATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTTAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGAATCATCTGACCTTTCTTTTTTTAGTGTATGCATTTAAGGTGTTTGATAAAATGTTCCGGTGAAGTTTCTCCAAACTTTTAAGCCAATTTGTGGTTGTGGGTAGGAGAAACTTTGTGGAAAATACAACAGAAATCTAGTTTCTTGTTATGATTAAATTACTAATGAAATGGACAAAACAAAAGGAGGGAAACCAAAGCTTTATTAGGGATATGTCTTTATCCATAATCTCTTTGTTTAGGCCAAAAAAGAAAGAGACAAAAAAAAGAAAAGAAAAAAGAAAGAAGGGGAAAAGCAGATGCCTTGGTATAATCAGTGTGAAAGAGATGCATACCAATTGCTTAACCATCTCTCCTTTGAAATAAAATATTCATTAACAAGTCAG

Coding sequence (CDS)

ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTTAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA

Protein sequence

MEGSDSIATVSSTPLSQSPSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT

Homology

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BLAST of CcUC02G038570.1 vs. NCBI nr
Match: XP_038902542.1 (LOB domain-containing protein 1 [Benincasa hispida])

HSP 1 Score: 352.8 bits (904), Expect = 1.9e-93
Identity = 189/197 (95.94%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   MEGSDSIATVSSTPLSQSPSSSSP-AP-PPPVVLSPCAACKILRRRCAERCVLAPYFPPT 60
           MEGSDS+ TVSSTPLSQSPSSSS  AP PPPVVLSPCAACKILRRRCAERCVLAPYFPPT
Sbjct: 1   MEGSDSVTTVSSTPLSQSPSSSSSLAPSPPPVVLSPCAACKILRRRCAERCVLAPYFPPT 60

Query: 61  EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQK 120
           EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQK
Sbjct: 61  EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQK 120

Query: 121 QVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISP 180
           QVNELQAQLAKAQAEVVNMQCQQANLV+FVCRELAQS HQSFDDFNGSPHNG LFQSISP
Sbjct: 121 QVNELQAQLAKAQAEVVNMQCQQANLVSFVCRELAQS-HQSFDDFNGSPHNG-LFQSISP 180

Query: 181 SYFDDSNVNSLWEPLWT 196
           SYFDDSNVNSLWEPLWT
Sbjct: 181 SYFDDSNVNSLWEPLWT 195

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BLAST of CcUC02G038570.1 vs. NCBI nr
Match: XP_008463908.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo] >KAA0035306.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK14330.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 344.7 bits (883), Expect = 5.1e-91
Identity = 186/199 (93.47%), Postives = 188/199 (94.47%), Query Frame = 0


Query: 1   MEGSDS--IATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPP 60
           MEGSDS  I TVSSTPLSQSP SSSSPAPPPPV+LSPCAACKILRRRCAERCVLAPYFPP
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ
Sbjct: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSIS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS HQSFD+FNGSPHNGLL     
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS-HQSFDEFNGSPHNGLLQSINP 180

Query: 181 PSYFDDS-NVNSLWEPLWT 196
           PSYFDDS NVNSLWEPLWT
Sbjct: 181 PSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of CcUC02G038570.1 vs. NCBI nr
Match: XP_022943961.1 (LOB domain-containing protein 1-like [Cucurbita moschata] >XP_022985541.1 LOB domain-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 339.0 bits (868), Expect = 2.8e-89
Identity = 177/196 (90.31%), Postives = 180/196 (91.84%), Query Frame = 0


Query: 1   MEGSDSIATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTE 60
           MEGSDSI T+SSTP SQSP SSSSPAPPPPVVLSPCAACKILRRRCAE CVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPS 180
           VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSH  SFDD N   H+GL     SPS
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180

Query: 181 YFDDSNVNSLWEPLWT 196
           YFDD+NVN LWEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of CcUC02G038570.1 vs. NCBI nr
Match: XP_004149555.1 (LOB domain-containing protein 1 [Cucumis sativus] >KGN47298.1 hypothetical protein Csa_022951 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 1.4e-88
Identity = 183/201 (91.04%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 1   MEGSDSI--ATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPP 60
           MEGSD+I   TVSSTPLSQSP SSSSPAPPPPV+LSPCAACKILRRRCAERCVLAPYFPP
Sbjct: 1   MEGSDTITVTTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           +EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASAR+RDPVYGSAGAICQLQ
Sbjct: 61  SEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSP--HNGLLFQS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS HQSFD+FNGSP  HNGLL   
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS-HQSFDEFNGSPQSHNGLLQSI 180

Query: 181 ISPSYFDDS-NVNSLWEPLWT 196
             PSYFDDS NVNSLWEPLWT
Sbjct: 181 HPPSYFDDSNNVNSLWEPLWT 200

[Close]

BLAST of CcUC02G038570.1 vs. NCBI nr
Match: XP_023512010.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336.7 bits (862), Expect = 1.4e-88
Identity = 180/197 (91.37%), Postives = 183/197 (92.89%), Query Frame = 0


Query: 1   MEGSDSIATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTE 60
           MEGSDSI T+SSTP S SP SSSSPAPPPPVVLSPCAACKILRRRCAE CVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSPSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSI-SP 180
           VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSH  SFDD N   H+G LFQSI SP
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSG-LFQSISSP 180

Query: 181 SYFDDSNVNSLWEPLWT 196
           SYFDD+NVN LWEPLWT
Sbjct: 181 SYFDDTNVNPLWEPLWT 196

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.2e-56
Identity = 123/196 (62.76%), Postives = 145/196 (73.98%), Query Frame = 0


Query: 4   SDSIATVSSTPLSQSPSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKF 63
           S S A+V++TP+  S SS  P+  P VVLSPCAACKILRRRCAERCVLAPYFPPT+PAKF
Sbjct: 3   SKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKF 62

Query: 64  AIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNEL 123
            IAHRVFGASNIIKFLQELPESQR DAV+S+VYEA ARIRDPVYG AGAI  LQ+QV+EL
Sbjct: 63  TIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSEL 122

Query: 124 QAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDD 183
           QAQLAKAQ E+VNMQ Q++NL+  +          + D       + + F+S    + +D
Sbjct: 123 QAQLAKAQVEMVNMQFQRSNLLELI---------YNMDQQQKQEQDNMSFESNDLGFLED 182

Query: 184 -SNVNS---LWEPLWT 196
            SN NS    W+PLWT
Sbjct: 183 KSNTNSSMLWWDPLWT 189

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 3.3e-53
Identity = 124/215 (57.67%), Postives = 150/215 (69.77%), Query Frame = 0


Query: 9   TVSSTPL-SQSPSSSSPAPP-------PPVVLSPCAACKILRRRCAERCVLAPYFPPTEP 68
           T ++TP+ S SP+SS P PP       PPVVLSPCAACKILRRRCA++CVLAPYFPPT+P
Sbjct: 22  TETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDP 81

Query: 69  AKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQV 128
           AKF IAHRVFGASNIIKFLQELPESQR DAV+S+VYEA AR+RDPVYG AGAI  LQ+QV
Sbjct: 82  AKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

Query: 129 NELQAQLAKAQAEVVNMQCQQANLVAFV---------CRELAQ------SHHQSFDDFNG 188
           +ELQAQLAK Q E+V MQ Q+++L+  +          +E  Q      S  +S D+F  
Sbjct: 142 SELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFIS 201

Query: 189 SPHNGLLFQSISPSYFDDSNVN-----SLWEPLWT 196
           SP      +S    + +D+N N     S W+PLWT
Sbjct: 202 SPDE----ESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 5.7e-37
Identity = 84/156 (53.85%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 33  SPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVS 92
           SPCA+CK+LRRRCA+ C+ APYFPP +P KFAI H+VFGASN+ K LQELP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 93  SLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCREL 152
           SLV+EA+AR+RDPVYG  GAI  LQ QV++LQ QLA AQAE++ +Q Q            
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN--------EPT 126

Query: 153 AQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNS 189
            QSHHQ  +      H  LL  + + +  + +N N+
Sbjct: 127 LQSHHQVLE--LDQDHKALLLNNNNINNCNTNNNNN 152

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.7e-36
Identity = 90/170 (52.94%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 33  SPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVS 92
           SPCAACK+LRRRCA+ CV +PYFP  EP KFA  HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 93  SLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCREL 152
           S+VYEA+AR+RDPVYG  GAI  LQ+Q++ LQAQLA AQAEVV+++ +Q+    F    L
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS--TNFPGHGL 131

Query: 153 AQSHHQSFDDFNGSPHNGLLFQSISP-------SYFDDSNVNSLWEPLWT 196
                 S    +GSP +    + +SP       S+ D  +  SL E +W+
Sbjct: 132 CPDSPSS----SGSPSS----KQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-31
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 24  PAPPPPVVL---SPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQ 83
           P   PP  L   +PCAACK+LRRRCA+ C  +PYF P EP KFA  H+VFGASN+ K L 
Sbjct: 32  PMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLM 91

Query: 84  ELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQ 143
           E+PESQRADA +SLVYEA+ R+RDPVYG  GAI  LQ+QV  LQA+L   ++E++  + +
Sbjct: 92  EVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR 151

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy TrEMBL
Match: A0A5D3CSE3 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00590 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.5e-91
Identity = 186/199 (93.47%), Postives = 188/199 (94.47%), Query Frame = 0


Query: 1   MEGSDS--IATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPP 60
           MEGSDS  I TVSSTPLSQSP SSSSPAPPPPV+LSPCAACKILRRRCAERCVLAPYFPP
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ
Sbjct: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSIS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS HQSFD+FNGSPHNGLL     
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS-HQSFDEFNGSPHNGLLQSINP 180

Query: 181 PSYFDDS-NVNSLWEPLWT 196
           PSYFDDS NVNSLWEPLWT
Sbjct: 181 PSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy TrEMBL
Match: A0A1S3CKA7 (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501920 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.5e-91
Identity = 186/199 (93.47%), Postives = 188/199 (94.47%), Query Frame = 0


Query: 1   MEGSDS--IATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPP 60
           MEGSDS  I TVSSTPLSQSP SSSSPAPPPPV+LSPCAACKILRRRCAERCVLAPYFPP
Sbjct: 1   MEGSDSLTITTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ
Sbjct: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSIS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS HQSFD+FNGSPHNGLL     
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS-HQSFDEFNGSPHNGLLQSINP 180

Query: 181 PSYFDDS-NVNSLWEPLWT 196
           PSYFDDS NVNSLWEPLWT
Sbjct: 181 PSYFDDSNNVNSLWEPLWT 198

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy TrEMBL
Match: A0A6J1J8I0 (LOB domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111483579 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 177/196 (90.31%), Postives = 180/196 (91.84%), Query Frame = 0


Query: 1   MEGSDSIATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTE 60
           MEGSDSI T+SSTP SQSP SSSSPAPPPPVVLSPCAACKILRRRCAE CVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPS 180
           VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSH  SFDD N   H+GL     SPS
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180

Query: 181 YFDDSNVNSLWEPLWT 196
           YFDD+NVN LWEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy TrEMBL
Match: A0A6J1FT49 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448531 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 177/196 (90.31%), Postives = 180/196 (91.84%), Query Frame = 0


Query: 1   MEGSDSIATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTE 60
           MEGSDSI T+SSTP SQSP SSSSPAPPPPVVLSPCAACKILRRRCAE CVLAPYFPPTE
Sbjct: 1   MEGSDSIITLSSTPPSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAEGCVLAPYFPPTE 60

Query: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120
           PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ
Sbjct: 61  PAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQ 120

Query: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPS 180
           VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSH  SFDD N   H+GL     SPS
Sbjct: 121 VNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSSFDDLNADSHSGLFHSISSPS 180

Query: 181 YFDDSNVNSLWEPLWT 196
           YFDD+NVN LWEPLWT
Sbjct: 181 YFDDTNVNPLWEPLWT 196

[Close]

BLAST of CcUC02G038570.1 vs. ExPASy TrEMBL
Match: A0A0A0KCM5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G290790 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.7e-89
Identity = 183/201 (91.04%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 1   MEGSDSI--ATVSSTPLSQSP-SSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPP 60
           MEGSD+I   TVSSTPLSQSP SSSSPAPPPPV+LSPCAACKILRRRCAERCVLAPYFPP
Sbjct: 1   MEGSDTITVTTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPP 60

Query: 61  TEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQ 120
           +EPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASAR+RDPVYGSAGAICQLQ
Sbjct: 61  SEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARVRDPVYGSAGAICQLQ 120

Query: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSP--HNGLLFQS 180
           KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS HQSFD+FNGSP  HNGLL   
Sbjct: 121 KQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQS-HQSFDEFNGSPQSHNGLLQSI 180

Query: 181 ISPSYFDDS-NVNSLWEPLWT 196
             PSYFDDS NVNSLWEPLWT
Sbjct: 181 HPPSYFDDSNNVNSLWEPLWT 200

[Close]

BLAST of CcUC02G038570.1 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 218.4 bits (555), Expect = 5.1e-57
Identity = 123/196 (62.76%), Postives = 145/196 (73.98%), Query Frame = 0


Query: 4   SDSIATVSSTPLSQSPSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKF 63
           S S A+V++TP+  S SS  P+  P VVLSPCAACKILRRRCAERCVLAPYFPPT+PAKF
Sbjct: 3   SKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKF 62

Query: 64  AIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNEL 123
            IAHRVFGASNIIKFLQELPESQR DAV+S+VYEA ARIRDPVYG AGAI  LQ+QV+EL
Sbjct: 63  TIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSEL 122

Query: 124 QAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDD 183
           QAQLAKAQ E+VNMQ Q++NL+  +          + D       + + F+S    + +D
Sbjct: 123 QAQLAKAQVEMVNMQFQRSNLLELI---------YNMDQQQKQEQDNMSFESNDLGFLED 182

Query: 184 -SNVNS---LWEPLWT 196
            SN NS    W+PLWT
Sbjct: 183 KSNTNSSMLWWDPLWT 189

[Close]

BLAST of CcUC02G038570.1 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-54
Identity = 124/215 (57.67%), Postives = 150/215 (69.77%), Query Frame = 0


Query: 9   TVSSTPL-SQSPSSSSPAPP-------PPVVLSPCAACKILRRRCAERCVLAPYFPPTEP 68
           T ++TP+ S SP+SS P PP       PPVVLSPCAACKILRRRCA++CVLAPYFPPT+P
Sbjct: 22  TETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDP 81

Query: 69  AKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQV 128
           AKF IAHRVFGASNIIKFLQELPESQR DAV+S+VYEA AR+RDPVYG AGAI  LQ+QV
Sbjct: 82  AKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQV 141

Query: 129 NELQAQLAKAQAEVVNMQCQQANLVAFV---------CRELAQ------SHHQSFDDFNG 188
           +ELQAQLAK Q E+V MQ Q+++L+  +          +E  Q      S  +S D+F  
Sbjct: 142 SELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESGDEFIS 201

Query: 189 SPHNGLLFQSISPSYFDDSNVN-----SLWEPLWT 196
           SP      +S    + +D+N N     S W+PLWT
Sbjct: 202 SPDE----ESNDLGFLEDNNNNNNSSMSWWDPLWT 232

[Close]

BLAST of CcUC02G038570.1 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-38
Identity = 84/156 (53.85%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 33  SPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVS 92
           SPCA+CK+LRRRCA+ C+ APYFPP +P KFAI H+VFGASN+ K LQELP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 93  SLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCREL 152
           SLV+EA+AR+RDPVYG  GAI  LQ QV++LQ QLA AQAE++ +Q Q            
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQN--------EPT 126

Query: 153 AQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNS 189
            QSHHQ  +      H  LL  + + +  + +N N+
Sbjct: 127 LQSHHQVLE--LDQDHKALLLNNNNINNCNTNNNNN 152

[Close]

BLAST of CcUC02G038570.1 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-37
Identity = 90/170 (52.94%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 33  SPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVS 92
           SPCAACK+LRRRCA+ CV +PYFP  EP KFA  HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 93  SLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCREL 152
           S+VYEA+AR+RDPVYG  GAI  LQ+Q++ LQAQLA AQAEVV+++ +Q+    F    L
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS--TNFPGHGL 131

Query: 153 AQSHHQSFDDFNGSPHNGLLFQSISP-------SYFDDSNVNSLWEPLWT 196
                 S    +GSP +    + +SP       S+ D  +  SL E +W+
Sbjct: 132 CPDSPSS----SGSPSS----KQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CcUC02G038570.1 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 24  PAPPPPVVL---SPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQ 83
           P   PP  L   +PCAACK+LRRRCA+ C  +PYF P EP KFA  H+VFGASN+ K L 
Sbjct: 32  PMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLM 91

Query: 84  ELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQ 143
           E+PESQRADA +SLVYEA+ R+RDPVYG  GAI  LQ+QV  LQA+L   ++E++  + +
Sbjct: 92  EVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR 151

The following BLAST results are available for this feature:

BLAST of CcUC02G038570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902542.1	1.9e-93	95.94	LOB domain-containing protein 1 [Benincasa hispida]	[more]
XP_008463908.1	5.1e-91	93.47	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo] >KAA0035306.1 LOB...	[more]
XP_022943961.1	2.8e-89	90.31	LOB domain-containing protein 1-like [Cucurbita moschata] >XP_022985541.1 LOB do...	[more]
XP_004149555.1	1.4e-88	91.04	LOB domain-containing protein 1 [Cucumis sativus] >KGN47298.1 hypothetical prote...	[more]
XP_023512010.1	1.4e-88	91.37	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC02G038570.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQR0	7.2e-56	62.76	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	3.3e-53	57.67	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q8LBW3	5.7e-37	53.85	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	3.7e-36	52.94	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8L5T5	2.1e-31	57.38	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of CcUC02G038570.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSE3	2.5e-91	93.47	LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CKA7	2.5e-91	93.47	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501920 PE=...	[more]
A0A6J1J8I0	1.3e-89	90.31	LOB domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111483579 PE=3...	[more]
A0A6J1FT49	1.3e-89	90.31	LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114485...	[more]
A0A0A0KCM5	6.7e-89	91.04	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G290790 PE=3 SV...	[more]

BLAST of CcUC02G038570.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07900.1	5.1e-57	62.76	LOB domain-containing protein 1	[more]
AT2G28500.1	2.4e-54	57.67	LOB domain-containing protein 11	[more]
AT2G30130.1	4.1e-38	53.85	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	2.6e-37	52.94	LOB domain-containing protein 4	[more]
AT2G40470.1	1.5e-32	57.38	LOB domain-containing protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 113..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 16..192
None	No IPR available	PANTHER	PTHR31301:SF141	LOB DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 16..192
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 34..131 e-value: 3.6E-41 score: 139.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 33..134 score: 26.143148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G038570	CcUC02G038570	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G038570.1-exon	CcUC02G038570.1-exon-CicolChr02:33977982..33978247	exon
CcUC02G038570.1-exon	CcUC02G038570.1-exon-CicolChr02:33978791..33979520	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G038570.1-five_prime_utr	CcUC02G038570.1-five_prime_utr-CicolChr02:33977982..33978007	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G038570.1-cds	CcUC02G038570.1-cds-CicolChr02:33978008..33978247	CDS
CcUC02G038570.1-cds	CcUC02G038570.1-cds-CicolChr02:33978791..33979138	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G038570.1-three_prime_utr	CcUC02G038570.1-three_prime_utr-CicolChr02:33979139..33979520	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G038570.1	CcUC02G038570.1-protein	polypeptide