CcUC02G031700.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G031700.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 27452694 .. 27454985 (-)
Sequence length	651
RNA-Seq Expression	CcUC02G031700.1
Synteny	CcUC02G031700.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTGAAATTTTACAAATCATTCCCTTTCCATCTGTTGATAGGAAAGCTTCAAATATGTGTTACTTCCACTTCACTTCAAATCTAACTTTCCATTCACATTTCAGCAAGTTCATGATTGGATGCTTGATAGAAACATCTTTTGACATCACTCCTTCAACTTCAATGCTGAGGTCAATGACAATGAGAGCTTCCCATAAGTTAACTTAGTTTTCTTTTCTTAATTGCTTGAAGGAAAGCATATCCAGATTCTCCTCCTGTCATTACCCCTATTCAACCATGTTCTTGATTTTGTACCCACATCAAATTTCTGCAGCATCAAGTGAAATGAAACCAAAAGATTTTGTCTTTTGACACGATGTTACTTTTGCCAATATCATTTCGCGTACCTCTACATCTACCACGACCAATTCATCATTTAAACGGTAAAAGTCAAACCAAGAAATGGCTCTACACAAAATCCTATAGCATCAAAGATCACTTCGCCATGGTATATGTAGGCTGTGCTTTCACATAACCAGACTTCAAATCAAGACAACTCAGCTACCTCTAACGAATCTTCTTCCTTAGTTTCATCCAACTGATACTATGATCTCGCTCCCTCCTCTTTGTTTTCAGCACTTTCAAATCTTTATCATTGCACCTACATCCCACTCGTCTTAATAATCAAGAACAGGAAATTAAATTTTCCAGAGTAAGTATAGCTCAACTAAAGTTAGAGCTCAGACAAACCTAGTCTCATCACCACAAAGCTTAGGTTATGAAGATATTTCGTCTTCCACCAAGTTAGGTAATTTCCATGCGAGATGCCTATAATACATAGAATTTGGCTACCCTCTGCTCAGAAGTCTTAAAGCTAACAATTCTACAAAATACATTTACTGCACGAGAAAATTAGTAGTACTACCACCATACTTACTCTTTTTCATTCATAATTAGACACATCATTAAATGATATATTAATTTATTTTATGGACTTCATATGATTCTTCAATGTTACTATTCTAACAAATAATAAACAAAGGTAGTATGAAAAAGAATCATGCTAGAATTTTCCCCCTACTTAACACATAAAGCCCCTGCAAGAAGTACCCTGTTAGAGGCTTAGTAACACATTTTAACCATCTACCTGTATCAATGAGTCTCACATGCCTTTTTTCCTTGCATAAGTAAATCAGATGGGGCTTCTACCTCATAATGTAGATAGAATAAAGTATTCTATTGTTTATGACTACTGGATAGACTATAGAGTTCTACAAGTAAACAGTAATGGCAAAATCATAGAGAACATTGGTGCAAAAACAAAAAGGAACACATGGGAGAGACCAAATTTAGGTTTGCTGGCCACTATGAAATAATTATTTATGCAACAAGACTACCATTTTAGCCAAAAGCAATAGATAGAACAGCCCTATCATATTCAAAGTAGGAACTATCAAAAAAATTTCTGTATTTTTCTTTTCTTTTTTCATAATAAGAAACCAACTTCCATTAAGCAAAATGAAGGCATCCCCTGCCCGAACAGTCATAAACTCATAACTAGTACAAGTTCCTCAACAAACAACTAAAATGAATATTTTTTCTATTATGGGAAACTTTCAAGCTAGCTTGTGAACCCAAAATCACAAAAATATTTGCAACTTGCTTATTTTGACCATGACTACACTTGCTTGCACCTTTTTTTTCTTTAACAAGAAACACCTTTTTTATTGATTTAATGGAAAGATATAAAATGCTCAAGAATACAAACTCCGATTCGGAGGGAAAAGAACAAAGCATCCTACCAAACTAATGACAAGAAGATATATATAAGAAAAAATTGGCAAAACAAGCTCTCCAAGAACAAAAAGGACCCAACCAAACACAAACCCTGAAAAATGATTGTTCAGAAGATAACTCCACAAGGAAAGCCTCAGCCGCGAACATCAAAGAGGAAAAGAGCAAGGCACCATACCCAGTCAACAATGCCAAAAACCTCCAAAGAAAAGCCACCAAACAGAAGAGTCAACATTCAAAATCAGAAAGACCACCAACGAGGCTATTGAAAGCAAAGTCCAGCTCACAAAATGACCTGGCAGCAGAAAACCAACAGTAGCAATAAAACCATTCAGAAAACCAGACCTAATTTTTAGGCTTAATCTCATAAAAAGTACTCTCAGTTTCTGCACCATATTGAAAGAGATCTTCCTACGTGAAGGGAGAATGAAAGCAGGGCAACCAACTTGGCTCAGAGGGACCCGAAGAACGTCATGGCTTCATAACAATAGCTTGGGAAGAGGGATCAATTGA

mRNA sequence

ATGCAGATTTTGTCTTTTGACACGATGTTACTTTTGCCAATATCATTTCGCGTACCTCTACATCTACCACGACCAATTCATCATTTAAACGGTAAAAGTCAAACCAAGAAATGGCTCTACACAAAATCCTATAGCATCAAAGATCACTTCGCCATGAGTAAGTATAGCTCAACTAAAGTTAGAGCTCAGACAAACCTAGTCTCATCACCACAAAGCTTAGGTTATGAAGATATTTCGTCTTCCACCAAGTTAGGACCCAACCAAACACAAACCCTGAAAAATGATTGTTCAGAAGATAACTCCACAAGGAAAGCCTCAGCCGCGAACATCAAAGAGGAAAAGAGCAAGGCACCATACCCAGTCAACAATGCCAAAAACCTCCAAAGAAAAGCCACCAAACAGAAGAGTCAACATTCAAAATCAGAAAGACCACCAACGAGGCTATTGAAAGCAAAGTCCAGCTCACAAAATGACCTGGCAGCAGAAAACCAACAGCTTAATCTCATAAAAAGTACTCTCAGTTTCTGCACCATATTGAAAGAGATCTTCCTACGTGAAGGGAGAATGAAAGCAGGGCAACCAACTTGGCTCAGAGGGACCCGAAGAACGTCATGGCTTCATAACAATAGCTTGGGAAGAGGGATCAATTGA

Coding sequence (CDS)

ATGCAGATTTTGTCTTTTGACACGATGTTACTTTTGCCAATATCATTTCGCGTACCTCTACATCTACCACGACCAATTCATCATTTAAACGGTAAAAGTCAAACCAAGAAATGGCTCTACACAAAATCCTATAGCATCAAAGATCACTTCGCCATGAGTAAGTATAGCTCAACTAAAGTTAGAGCTCAGACAAACCTAGTCTCATCACCACAAAGCTTAGGTTATGAAGATATTTCGTCTTCCACCAAGTTAGGACCCAACCAAACACAAACCCTGAAAAATGATTGTTCAGAAGATAACTCCACAAGGAAAGCCTCAGCCGCGAACATCAAAGAGGAAAAGAGCAAGGCACCATACCCAGTCAACAATGCCAAAAACCTCCAAAGAAAAGCCACCAAACAGAAGAGTCAACATTCAAAATCAGAAAGACCACCAACGAGGCTATTGAAAGCAAAGTCCAGCTCACAAAATGACCTGGCAGCAGAAAACCAACAGCTTAATCTCATAAAAAGTACTCTCAGTTTCTGCACCATATTGAAAGAGATCTTCCTACGTGAAGGGAGAATGAAAGCAGGGCAACCAACTTGGCTCAGAGGGACCCGAAGAACGTCATGGCTTCATAACAATAGCTTGGGAAGAGGGATCAATTGA

Protein sequence

MQILSFDTMLLLPISFRVPLHLPRPIHHLNGKSQTKKWLYTKSYSIKDHFAMSKYSSTKVRAQTNLVSSPQSLGYEDISSSTKLGPNQTQTLKNDCSEDNSTRKASAANIKEEKSKAPYPVNNAKNLQRKATKQKSQHSKSERPPTRLLKAKSSSQNDLAAENQQLNLIKSTLSFCTILKEIFLREGRMKAGQPTWLRGTRRTSWLHNNSLGRGIN

Homology

The following BLAST results are available for this feature:

BLAST of CcUC02G031700.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G031700.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G031700.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G031700.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..156

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G031700	CcUC02G031700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G031700.1-exon	CcUC02G031700.1-exon-CicolChr02:27452694..27452850	exon
CcUC02G031700.1-exon	CcUC02G031700.1-exon-CicolChr02:27452892..27453132	exon
CcUC02G031700.1-exon	CcUC02G031700.1-exon-CicolChr02:27454193..27454289	exon
CcUC02G031700.1-exon	CcUC02G031700.1-exon-CicolChr02:27454493..27454642	exon
CcUC02G031700.1-exon	CcUC02G031700.1-exon-CicolChr02:27454980..27454985	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G031700.1-cds	CcUC02G031700.1-cds-CicolChr02:27452694..27452850	CDS
CcUC02G031700.1-cds	CcUC02G031700.1-cds-CicolChr02:27452892..27453132	CDS
CcUC02G031700.1-cds	CcUC02G031700.1-cds-CicolChr02:27454193..27454289	CDS
CcUC02G031700.1-cds	CcUC02G031700.1-cds-CicolChr02:27454493..27454642	CDS
CcUC02G031700.1-cds	CcUC02G031700.1-cds-CicolChr02:27454980..27454985	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G031700.1	CcUC02G031700.1-protein	polypeptide