Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGTAAATAGGACCATTGGGCTTGGATCATTGATTGTGTCTCACCTCAAAAGTTGGAGTTGGTGGTGCTGCTTGTGTGGAAGACTTGGGAAGCTAGAAATAATATGTTATTTTTCGAAAGATTCCAATTGATAGAGACAATATTAGTGCATCTATTGAGAGGTGTATCCATGAAGAGCAAATTTCTAATGTGGTGTCTACTGATAAAGTTGTCGAGAGAAACCACTTGACTCATCCTCTTCCTTCTTCAACTGGCTAATATTGACCTTTGAGAAATTAGTGGAAGGTGAACATTGCAGTTGCTTGAAGCCCTGACCGACGTTCAGATGACCTAGAATGGGTGCTTCGAGACCACCTGGGTCATGTTTGTCTTGCTGGCCTCAAGTTCATCAAAAAATGTAATGAAGTCAATGTTCTTTATGTAATGAGTATGTGTGAAGACCTTCTTAACATCATCTCTCCCAATGTTTGTCTTGTTATTGTCAAATTAGATTGTTTAGAAGTTGTTAACCTTTTATCTGGCAATTGTAAGGATCTAACAGAAGTCTCCTTTTTCATCCACGAGGTTAAGACTTATGCACAAGAATGGAGCAATGTTTCTTTTCATGTTCGTCGTTGGAATAATATTATGGCCCACTCTTTGGCTTCTAAGATGTTGGAAGAGCAAGCTTCTTCCCTTCTTTTTTTCTCCTTACCCTGAGTGGTTTGAGTCTCTTGTTTCTCTTAAAGTAATTCTGTAGTTTGCTTGTTGATATTTGTTTCTTAAAAAGAAAATAAGGGATAAAGTGATAATTTTTCGTCAACTAATTTAAATATAACTCAAGTGATCATTAAAATATATGTTAACTAGTTAAAACTTTAAATTCTTACATTAGAATTGTGTTGAATTAAAAAAAAAAAAAACTAAAAATGAAATAAATAAATAAAATGCACATGTTCCTTAAAATCAACAAAGACCTAAAATAACTCTCTTCGTCAGTCCATTTTGATCTCATTAGATGTCATTATGAGAAAAGACATAGAACTTCAAAATGGTTCGTTTTGATTACAAACAAAATACACATTTCCTGTGAATTTCAACTTCAAATTTTTCATCTATTATCATCTTCTTTGTGAATACTTCAAAAAATTGTGCGAAAAGCTAGGAAGGAAAATTTTAAGTTCTAAATCAGCTAAGGATTTTCAAGCGCCAGAGCCTTAGAACTATAATCCAGCTGAAGCCGTAAATTCCAATTCAGGGGATCGCCAAGTTTCTTGAGAAGTGACTCAGCGATGAATTTATAGGCTGCTTCAGTCGGATGAATGCTATCCCAAAACATAAATTTTGAAGAGTCTTCACACGTTGGGATTATTGCATTACACAGAGGCCCTGCTTCCACCAATCCAATTCCGCAGCAACCTGTGGTCGTGTGCTCAAAACCTGTTCGATGAAATGCCCCAAAGAAAATTTTAGGTGAAAATGGTTTTCAGAACTTGATTTCTCTCAAATATTTACTGCATTGGAGTCAATAAGTAGATGGGGTTTTTCAATTTTGAGTGGTAGGCCACTGACTTACCATATTTTTGAGGATTGTTTACCATGTCGATGAGGGGGGTGTAAATGTCTGCATACAAAATTGTGCTTCCAGAGAGCTGTGGCTGTAAATTGCTCAGCAGCTTTGAAAGCTTCTGATTATAGGCTTTGGAATCTGAGTTTTGATCTTCTAAACAACTTCGATTTAGGGGATTTTCAAAGGCTATGGTCTCTTGAATGGGAAGACAACCAACAGGTGGGAGGCCCGCAACCACTATATTTCGGCATCCAAGTTGGTAAATTTCCTGTTAAACAGAGTTAAAGTGTTATCTTCACTTGGTTCAGGTGTAAGCAAATAGTTATAGGATTAGAATTTAGAGGCTTATTAGAGTATTTTTAAAGTAACCTTTTTAAAAATAGGAGTATGGTTAATGGCCTACTACTTTCTTTTAAAGTACAGGGATAAACTGAATATGGAAAGTTATAATTTAACCTTTGGATTCTTATGTCCAATATTCATAATTTACCTTGATCAAGCTTTGTAGCCTATTCTGTAGAAAATCTTGATAGCCACTAATATTGTACTGCAACTGCCTCGTGGGAAGGTCATAGAAATTAATGTTTATGTCATTGGTTCCTGCGCTAATAACAACCAAAGCACTACCAATAATCCTCCTACTTTCATCCACACCCACAATCCTTTGAAGCCTTTGAATGTAGTTCTTGAAAAGATCAATTTGCTTCATCACAGGAATGACTTTAGATATAGCAGCAGTTAGATCATCGAATCCTGTGCCAGCCGATGCAAAACTCACCCCTGTTTTTATGTCATCGTCTGATAATATTGGATCCAAAAATGGAGGAACAAGCTCTTTTATCCCTAGTTTAGAAGCTACCATGTCAGGAATGAGTTTCCCATCACTGAACCTTCCAGTAGCAACATGGCCAGGAAAATTTTTGCCATATGGAAAATAA
mRNA sequence
ATGTCAGAGTCTTCACACGTTGGGATTATTGCATTACACAGAGGCCCTGCTTCCACCAATCCAATTCCGCAGCAACCTGTGGTCGTGTGCTCAAAACCTAGAGCTGTGGCTGTAAATTGCTCAGCAGCTTTGAAAGCTTCTGATTATAGGCTTTGGAATCTGAGTTTTGATCTTCTAAACAACTTCGATTTAGGGGATTTTCAAAGGCTATGGTCTCTTGAATGGGAAGACAACCAACAGGTGGGAGGCCCGCAACCACTATATTTCGGCATCCAAGTTGGAATGACTTTAGATATAGCAGCAGTTAGATCATCGAATCCTGTGCCAGCCGATGCAAAACTCACCCCTGTTTTTATGTCATCGTCTGATAATATTGGATCCAAAAATGGAGGAACAAGCTCTTTTATCCCTAGTTTAGAAGCTACCATGTCAGGAATGAGTTTCCCATCACTGAACCTTCCAGTAGCAACATGGCCAGGAAAATTTTTGCCATATGGAAAATAA
Coding sequence (CDS)
ATGTCAGAGTCTTCACACGTTGGGATTATTGCATTACACAGAGGCCCTGCTTCCACCAATCCAATTCCGCAGCAACCTGTGGTCGTGTGCTCAAAACCTAGAGCTGTGGCTGTAAATTGCTCAGCAGCTTTGAAAGCTTCTGATTATAGGCTTTGGAATCTGAGTTTTGATCTTCTAAACAACTTCGATTTAGGGGATTTTCAAAGGCTATGGTCTCTTGAATGGGAAGACAACCAACAGGTGGGAGGCCCGCAACCACTATATTTCGGCATCCAAGTTGGAATGACTTTAGATATAGCAGCAGTTAGATCATCGAATCCTGTGCCAGCCGATGCAAAACTCACCCCTGTTTTTATGTCATCGTCTGATAATATTGGATCCAAAAATGGAGGAACAAGCTCTTTTATCCCTAGTTTAGAAGCTACCATGTCAGGAATGAGTTTCCCATCACTGAACCTTCCAGTAGCAACATGGCCAGGAAAATTTTTGCCATATGGAAAATAA
Protein sequence
MSESSHVGIIALHRGPASTNPIPQQPVVVCSKPRAVAVNCSAALKASDYRLWNLSFDLLNNFDLGDFQRLWSLEWEDNQQVGGPQPLYFGIQVGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLNLPVATWPGKFLPYGK
Homology
BLAST of CcUC02G025290.1 vs. NCBI nr
Match:
THG20953.1 (hypothetical protein TEA_006628 [Camellia sinensis var. sinensis])
HSP 1 Score: 70.9 bits (172), Expect = 1.2e-08
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0
Query: 93 VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
VG+ + V SS PADAKLTPV SSSD GS+NGGT S IP++ AT SG SFP N
Sbjct: 157 VGLETVTSEVTSSYHDPADAKLTPVLSSSSDRFGSRNGGTMSLIPNMVATKSGTSFPFEN 216
Query: 153 LPVAT 158
PVAT
Sbjct: 217 RPVAT 221
BLAST of CcUC02G025290.1 vs. NCBI nr
Match:
PLY84773.1 (hypothetical protein LSAT_5X110740 [Lactuca sativa])
HSP 1 Score: 62.0 bits (149), Expect = 5.6e-06
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 0
Query: 106 NPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLNLPVATWPGKFLPY 165
NP P + K TPV +S S+ + +NGGT FIPS +A S SFP N PV +PGK PY
Sbjct: 197 NPDPTEVKFTPVRISKSEILSCRNGGTVCFIPSRDAQKSDTSFPFENRPVGIFPGKSSPY 256
Query: 166 G 167
G
Sbjct: 257 G 257
BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match:
A0A4S4EVH4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_006628 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0
Query: 93 VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
VG+ + V SS PADAKLTPV SSSD GS+NGGT S IP++ AT SG SFP N
Sbjct: 157 VGLETVTSEVTSSYHDPADAKLTPVLSSSSDRFGSRNGGTMSLIPNMVATKSGTSFPFEN 216
Query: 153 LPVAT 158
PVAT
Sbjct: 217 RPVAT 221
BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match:
A0A0E0N4E7 (Exocyst subunit Exo70 family protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0
Query: 93 VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
+G LD V SSNP PADAK TPV MS D S+NGG +S S SG S P N
Sbjct: 574 IGRVLDKRDVWSSNPEPADAKFTPVMMSLLDRSFSRNGGENSLSCSFSLRRSGTSRPLEN 633
Query: 153 LPVATWPGKFLP 165
LPV PGKFLP
Sbjct: 634 LPVGFLPGKFLP 645
BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match:
A0A0D3EVR7 (Exocyst subunit Exo70 family protein OS=Oryza barthii OX=65489 PE=3 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0
Query: 93 VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
+G LD V SSNP PADAK TPV MS D S+NGG +S S SG S P N
Sbjct: 574 IGRVLDKRDVWSSNPEPADAKFTPVMMSLLDRSFSRNGGENSLSCSFSLRRSGTSRPLEN 633
Query: 153 LPVATWPGKFLP 165
LPV PGKFLP
Sbjct: 634 LPVGFLPGKFLP 645
BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match:
A0A0D3EVR9 (Exocyst subunit Exo70 family protein OS=Oryza barthii OX=65489 PE=3 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0
Query: 93 VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
+G LD V SSNP PADAK TPV MS D S+NGG +S S SG S P N
Sbjct: 569 IGRVLDKRDVWSSNPEPADAKFTPVMMSLLDRSFSRNGGENSLSCSFSLRRSGTSRPLEN 628
Query: 153 LPVATWPGKFLP 165
LPV PGKFLP
Sbjct: 629 LPVGFLPGKFLP 640
BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match:
A0A0E0N4F1 (Exocyst subunit Exo70 family protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0
Query: 93 VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
+G LD V SSNP PADAK TPV MS D S+NGG +S S SG S P N
Sbjct: 569 IGRVLDKRDVWSSNPEPADAKFTPVMMSLLDRSFSRNGGENSLSCSFSLRRSGTSRPLEN 628
Query: 153 LPVATWPGKFLP 165
LPV PGKFLP
Sbjct: 629 LPVGFLPGKFLP 640
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| THG20953.1 | 1.2e-08 | 60.00 | hypothetical protein TEA_006628 [Camellia sinensis var. sinensis] | [more] |
| PLY84773.1 | 5.6e-06 | 50.82 | hypothetical protein LSAT_5X110740 [Lactuca sativa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A4S4EVH4 | 5.9e-09 | 60.00 | Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0066... | [more] |
| A0A0E0N4E7 | 6.5e-08 | 54.17 | Exocyst subunit Exo70 family protein OS=Oryza rufipogon OX=4529 PE=3 SV=1 | [more] |
| A0A0D3EVR7 | 6.5e-08 | 54.17 | Exocyst subunit Exo70 family protein OS=Oryza barthii OX=65489 PE=3 SV=1 | [more] |
| A0A0D3EVR9 | 6.5e-08 | 54.17 | Exocyst subunit Exo70 family protein OS=Oryza barthii OX=65489 PE=3 SV=1 | [more] |
| A0A0E0N4F1 | 6.5e-08 | 54.17 | Exocyst subunit Exo70 family protein OS=Oryza rufipogon OX=4529 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC02G025290.1-exon | CcUC02G025290.1-exon-CicolChr02:9843343..9843349 | exon |
| CcUC02G025290.1-exon | CcUC02G025290.1-exon-CicolChr02:9844677..9844768 | exon |
| CcUC02G025290.1-exon | CcUC02G025290.1-exon-CicolChr02:9844975..9845155 | exon |
| CcUC02G025290.1-exon | CcUC02G025290.1-exon-CicolChr02:9845611..9845834 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC02G025290.1-cds | CcUC02G025290.1-cds-CicolChr02:9843343..9843349 | CDS |
| CcUC02G025290.1-cds | CcUC02G025290.1-cds-CicolChr02:9844677..9844768 | CDS |
| CcUC02G025290.1-cds | CcUC02G025290.1-cds-CicolChr02:9844975..9845155 | CDS |
| CcUC02G025290.1-cds | CcUC02G025290.1-cds-CicolChr02:9845611..9845834 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC02G025290.1 | CcUC02G025290.1-protein | polypeptide |
