CcUC02G025290.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G025290.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Exocyst subunit Exo70 family protein
Location	CicolChr02: 9843343 .. 9845834 (+)
Sequence length	504
RNA-Seq Expression	CcUC02G025290.1
Synteny	CcUC02G025290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTAAATAGGACCATTGGGCTTGGATCATTGATTGTGTCTCACCTCAAAAGTTGGAGTTGGTGGTGCTGCTTGTGTGGAAGACTTGGGAAGCTAGAAATAATATGTTATTTTTCGAAAGATTCCAATTGATAGAGACAATATTAGTGCATCTATTGAGAGGTGTATCCATGAAGAGCAAATTTCTAATGTGGTGTCTACTGATAAAGTTGTCGAGAGAAACCACTTGACTCATCCTCTTCCTTCTTCAACTGGCTAATATTGACCTTTGAGAAATTAGTGGAAGGTGAACATTGCAGTTGCTTGAAGCCCTGACCGACGTTCAGATGACCTAGAATGGGTGCTTCGAGACCACCTGGGTCATGTTTGTCTTGCTGGCCTCAAGTTCATCAAAAAATGTAATGAAGTCAATGTTCTTTATGTAATGAGTATGTGTGAAGACCTTCTTAACATCATCTCTCCCAATGTTTGTCTTGTTATTGTCAAATTAGATTGTTTAGAAGTTGTTAACCTTTTATCTGGCAATTGTAAGGATCTAACAGAAGTCTCCTTTTTCATCCACGAGGTTAAGACTTATGCACAAGAATGGAGCAATGTTTCTTTTCATGTTCGTCGTTGGAATAATATTATGGCCCACTCTTTGGCTTCTAAGATGTTGGAAGAGCAAGCTTCTTCCCTTCTTTTTTTCTCCTTACCCTGAGTGGTTTGAGTCTCTTGTTTCTCTTAAAGTAATTCTGTAGTTTGCTTGTTGATATTTGTTTCTTAAAAAGAAAATAAGGGATAAAGTGATAATTTTTCGTCAACTAATTTAAATATAACTCAAGTGATCATTAAAATATATGTTAACTAGTTAAAACTTTAAATTCTTACATTAGAATTGTGTTGAATTAAAAAAAAAAAAAACTAAAAATGAAATAAATAAATAAAATGCACATGTTCCTTAAAATCAACAAAGACCTAAAATAACTCTCTTCGTCAGTCCATTTTGATCTCATTAGATGTCATTATGAGAAAAGACATAGAACTTCAAAATGGTTCGTTTTGATTACAAACAAAATACACATTTCCTGTGAATTTCAACTTCAAATTTTTCATCTATTATCATCTTCTTTGTGAATACTTCAAAAAATTGTGCGAAAAGCTAGGAAGGAAAATTTTAAGTTCTAAATCAGCTAAGGATTTTCAAGCGCCAGAGCCTTAGAACTATAATCCAGCTGAAGCCGTAAATTCCAATTCAGGGGATCGCCAAGTTTCTTGAGAAGTGACTCAGCGATGAATTTATAGGCTGCTTCAGTCGGATGAATGCTATCCCAAAACATAAATTTTGAAGAGTCTTCACACGTTGGGATTATTGCATTACACAGAGGCCCTGCTTCCACCAATCCAATTCCGCAGCAACCTGTGGTCGTGTGCTCAAAACCTGTTCGATGAAATGCCCCAAAGAAAATTTTAGGTGAAAATGGTTTTCAGAACTTGATTTCTCTCAAATATTTACTGCATTGGAGTCAATAAGTAGATGGGGTTTTTCAATTTTGAGTGGTAGGCCACTGACTTACCATATTTTTGAGGATTGTTTACCATGTCGATGAGGGGGGTGTAAATGTCTGCATACAAAATTGTGCTTCCAGAGAGCTGTGGCTGTAAATTGCTCAGCAGCTTTGAAAGCTTCTGATTATAGGCTTTGGAATCTGAGTTTTGATCTTCTAAACAACTTCGATTTAGGGGATTTTCAAAGGCTATGGTCTCTTGAATGGGAAGACAACCAACAGGTGGGAGGCCCGCAACCACTATATTTCGGCATCCAAGTTGGTAAATTTCCTGTTAAACAGAGTTAAAGTGTTATCTTCACTTGGTTCAGGTGTAAGCAAATAGTTATAGGATTAGAATTTAGAGGCTTATTAGAGTATTTTTAAAGTAACCTTTTTAAAAATAGGAGTATGGTTAATGGCCTACTACTTTCTTTTAAAGTACAGGGATAAACTGAATATGGAAAGTTATAATTTAACCTTTGGATTCTTATGTCCAATATTCATAATTTACCTTGATCAAGCTTTGTAGCCTATTCTGTAGAAAATCTTGATAGCCACTAATATTGTACTGCAACTGCCTCGTGGGAAGGTCATAGAAATTAATGTTTATGTCATTGGTTCCTGCGCTAATAACAACCAAAGCACTACCAATAATCCTCCTACTTTCATCCACACCCACAATCCTTTGAAGCCTTTGAATGTAGTTCTTGAAAAGATCAATTTGCTTCATCACAGGAATGACTTTAGATATAGCAGCAGTTAGATCATCGAATCCTGTGCCAGCCGATGCAAAACTCACCCCTGTTTTTATGTCATCGTCTGATAATATTGGATCCAAAAATGGAGGAACAAGCTCTTTTATCCCTAGTTTAGAAGCTACCATGTCAGGAATGAGTTTCCCATCACTGAACCTTCCAGTAGCAACATGGCCAGGAAAATTTTTGCCATATGGAAAATAA

mRNA sequence

ATGTCAGAGTCTTCACACGTTGGGATTATTGCATTACACAGAGGCCCTGCTTCCACCAATCCAATTCCGCAGCAACCTGTGGTCGTGTGCTCAAAACCTAGAGCTGTGGCTGTAAATTGCTCAGCAGCTTTGAAAGCTTCTGATTATAGGCTTTGGAATCTGAGTTTTGATCTTCTAAACAACTTCGATTTAGGGGATTTTCAAAGGCTATGGTCTCTTGAATGGGAAGACAACCAACAGGTGGGAGGCCCGCAACCACTATATTTCGGCATCCAAGTTGGAATGACTTTAGATATAGCAGCAGTTAGATCATCGAATCCTGTGCCAGCCGATGCAAAACTCACCCCTGTTTTTATGTCATCGTCTGATAATATTGGATCCAAAAATGGAGGAACAAGCTCTTTTATCCCTAGTTTAGAAGCTACCATGTCAGGAATGAGTTTCCCATCACTGAACCTTCCAGTAGCAACATGGCCAGGAAAATTTTTGCCATATGGAAAATAA

Coding sequence (CDS)

ATGTCAGAGTCTTCACACGTTGGGATTATTGCATTACACAGAGGCCCTGCTTCCACCAATCCAATTCCGCAGCAACCTGTGGTCGTGTGCTCAAAACCTAGAGCTGTGGCTGTAAATTGCTCAGCAGCTTTGAAAGCTTCTGATTATAGGCTTTGGAATCTGAGTTTTGATCTTCTAAACAACTTCGATTTAGGGGATTTTCAAAGGCTATGGTCTCTTGAATGGGAAGACAACCAACAGGTGGGAGGCCCGCAACCACTATATTTCGGCATCCAAGTTGGAATGACTTTAGATATAGCAGCAGTTAGATCATCGAATCCTGTGCCAGCCGATGCAAAACTCACCCCTGTTTTTATGTCATCGTCTGATAATATTGGATCCAAAAATGGAGGAACAAGCTCTTTTATCCCTAGTTTAGAAGCTACCATGTCAGGAATGAGTTTCCCATCACTGAACCTTCCAGTAGCAACATGGCCAGGAAAATTTTTGCCATATGGAAAATAA

Protein sequence

MSESSHVGIIALHRGPASTNPIPQQPVVVCSKPRAVAVNCSAALKASDYRLWNLSFDLLNNFDLGDFQRLWSLEWEDNQQVGGPQPLYFGIQVGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLNLPVATWPGKFLPYGK

Homology

[Close]

BLAST of CcUC02G025290.1 vs. NCBI nr
Match: THG20953.1 (hypothetical protein TEA_006628 [Camellia sinensis var. sinensis])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-08
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 93  VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
           VG+    + V SS   PADAKLTPV  SSSD  GS+NGGT S IP++ AT SG SFP  N
Sbjct: 157 VGLETVTSEVTSSYHDPADAKLTPVLSSSSDRFGSRNGGTMSLIPNMVATKSGTSFPFEN 216

Query: 153 LPVAT 158
            PVAT
Sbjct: 217 RPVAT 221

[Close]

BLAST of CcUC02G025290.1 vs. NCBI nr
Match: PLY84773.1 (hypothetical protein LSAT_5X110740 [Lactuca sativa])

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-06
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 106 NPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLNLPVATWPGKFLPY 165
           NP P + K TPV +S S+ +  +NGGT  FIPS +A  S  SFP  N PV  +PGK  PY
Sbjct: 197 NPDPTEVKFTPVRISKSEILSCRNGGTVCFIPSRDAQKSDTSFPFENRPVGIFPGKSSPY 256

Query: 166 G 167
           G
Sbjct: 257 G 257

[Close]

BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match: A0A4S4EVH4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_006628 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 93  VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
           VG+    + V SS   PADAKLTPV  SSSD  GS+NGGT S IP++ AT SG SFP  N
Sbjct: 157 VGLETVTSEVTSSYHDPADAKLTPVLSSSSDRFGSRNGGTMSLIPNMVATKSGTSFPFEN 216

Query: 153 LPVAT 158
            PVAT
Sbjct: 217 RPVAT 221

[Close]

BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match: A0A0E0N4E7 (Exocyst subunit Exo70 family protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 93  VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
           +G  LD   V SSNP PADAK TPV MS  D   S+NGG +S   S     SG S P  N
Sbjct: 574 IGRVLDKRDVWSSNPEPADAKFTPVMMSLLDRSFSRNGGENSLSCSFSLRRSGTSRPLEN 633

Query: 153 LPVATWPGKFLP 165
           LPV   PGKFLP
Sbjct: 634 LPVGFLPGKFLP 645

[Close]

BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match: A0A0D3EVR7 (Exocyst subunit Exo70 family protein OS=Oryza barthii OX=65489 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 93  VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
           +G  LD   V SSNP PADAK TPV MS  D   S+NGG +S   S     SG S P  N
Sbjct: 574 IGRVLDKRDVWSSNPEPADAKFTPVMMSLLDRSFSRNGGENSLSCSFSLRRSGTSRPLEN 633

Query: 153 LPVATWPGKFLP 165
           LPV   PGKFLP
Sbjct: 634 LPVGFLPGKFLP 645

[Close]

BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match: A0A0D3EVR9 (Exocyst subunit Exo70 family protein OS=Oryza barthii OX=65489 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 93  VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
           +G  LD   V SSNP PADAK TPV MS  D   S+NGG +S   S     SG S P  N
Sbjct: 569 IGRVLDKRDVWSSNPEPADAKFTPVMMSLLDRSFSRNGGENSLSCSFSLRRSGTSRPLEN 628

Query: 153 LPVATWPGKFLP 165
           LPV   PGKFLP
Sbjct: 629 LPVGFLPGKFLP 640

[Close]

BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL
Match: A0A0E0N4F1 (Exocyst subunit Exo70 family protein OS=Oryza rufipogon OX=4529 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 93  VGMTLDIAAVRSSNPVPADAKLTPVFMSSSDNIGSKNGGTSSFIPSLEATMSGMSFPSLN 152
           +G  LD   V SSNP PADAK TPV MS  D   S+NGG +S   S     SG S P  N
Sbjct: 569 IGRVLDKRDVWSSNPEPADAKFTPVMMSLLDRSFSRNGGENSLSCSFSLRRSGTSRPLEN 628

Query: 153 LPVATWPGKFLP 165
           LPV   PGKFLP
Sbjct: 629 LPVGFLPGKFLP 640

The following BLAST results are available for this feature:

BLAST of CcUC02G025290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
THG20953.1	1.2e-08	60.00	hypothetical protein TEA_006628 [Camellia sinensis var. sinensis]	[more]
PLY84773.1	5.6e-06	50.82	hypothetical protein LSAT_5X110740 [Lactuca sativa]	[more]

BLAST of CcUC02G025290.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4S4EVH4	5.9e-09	60.00	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0066...	[more]
A0A0E0N4E7	6.5e-08	54.17	Exocyst subunit Exo70 family protein OS=Oryza rufipogon OX=4529 PE=3 SV=1	[more]
A0A0D3EVR7	6.5e-08	54.17	Exocyst subunit Exo70 family protein OS=Oryza barthii OX=65489 PE=3 SV=1	[more]
A0A0D3EVR9	6.5e-08	54.17	Exocyst subunit Exo70 family protein OS=Oryza barthii OX=65489 PE=3 SV=1	[more]
A0A0E0N4F1	6.5e-08	54.17	Exocyst subunit Exo70 family protein OS=Oryza rufipogon OX=4529 PE=3 SV=1	[more]

BLAST of CcUC02G025290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G025290	CcUC02G025290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G025290.1-exon	CcUC02G025290.1-exon-CicolChr02:9843343..9843349	exon
CcUC02G025290.1-exon	CcUC02G025290.1-exon-CicolChr02:9844677..9844768	exon
CcUC02G025290.1-exon	CcUC02G025290.1-exon-CicolChr02:9844975..9845155	exon
CcUC02G025290.1-exon	CcUC02G025290.1-exon-CicolChr02:9845611..9845834	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G025290.1-cds	CcUC02G025290.1-cds-CicolChr02:9843343..9843349	CDS
CcUC02G025290.1-cds	CcUC02G025290.1-cds-CicolChr02:9844677..9844768	CDS
CcUC02G025290.1-cds	CcUC02G025290.1-cds-CicolChr02:9844975..9845155	CDS
CcUC02G025290.1-cds	CcUC02G025290.1-cds-CicolChr02:9845611..9845834	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G025290.1	CcUC02G025290.1-protein	polypeptide