Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTTGCAGTAATAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAATGGAGAAGAAAGAAATCAAATATGGTCGCGAATTTGGGTATGTCTGCCGCAGGGAAATACAGAAAAAAAGAAGCTTTGGGTTTTAGGGTTTACGTTCTTATTTGAGTTTTCTACACACTATTGTTTTATCACTATTTTCAATTTTTTAATTTTTTAATATTTTGTTCATATTTTATTTCAATATAATCATTTTTAAAATTATTCAGAGCCCCGTTTAGTCGGAGATATTGTTTGATATGGATAAATCTCTTAAATTTAAATCTGTGAGATGGATAAGCAAAACCATAAATGTTAAATATGTGTTTGATTTACCAATTTTATATATAAAAAATAAAATTAAATAATTATTTAATTAAATGAAAGAGAACAAATAACCTAGTCATAAATTTTTAGTATTATTTACTATATTATTATATTAAATAATTATTTAATCACTGAAAAATTAAAAATATAATATGGTTGATTGTTTTAAATGGTAAAAATTGCTCCAAATATTTTCAAATATAATAAAATGTCATTATCTATTGATAATATACATCTATTAGTGTTTATATATCAATGACATTTTGCTATATTTGTAAATATGTTGGCTCATTTTGATATATTTGAAAATAATTTTAATTAATATTAATTTATTAATTAATTAGACTATATATTTTAGTGTTATCTCTGGCATGTATGTTGGGTATTAGAAAATTCATATCAAGTGCATTTTAAAGTTTCTTGGATAATAGTATCCTAGGTTTTAAAAAGTGAAATTATGTGAAACAAACAAGGATATTAAATATTTGTCTAAAATTCTATGGCAAAACTATGAAACAAACGGGCCCTAGAATTATTTTTATACATTCTTATAATATAATTTTGATAAAAATATCAATTCATAGTAGTTTGTGCCAATTTAAACCTTGAATATTAACTTAACCCTAAACTTTTGTAAGTGTATTAATTTGCACATTCTATAGTTGTATCGATTAAACCAATAAACTTACATAAATTAATCAATTTGGACTCTTAATCAGAATTTTCTTTAAGAAGTTCATTATTTACTCTAATTGTCTATTTCGTAAAATCAACATTTGAAAAGTCTACACACATTTGAGAATAAATGCATGAATAATTAAAAATGTAATTGACTGAAATCATAAGTTTCAAAAGATATTGATTGAAGAAAATCTAGAGCAGATGTAAATCACTTACGAAAATTTAGGTTTAAATTGATACCATTCTTAGTTTAGAGTTTTAATTGATACAACCTCCAAAGTTTAGAAGTAAATTGATATTTACCTTATATTCTTTTAGTTATTTGAATATTTTTATGAATTAAAATATATGACTTTTTTAAGAAGGATTAAAATGTATGGGTTAGCCTCTAATATTTGAGTGTTTTTTTAACTTAGTCAAAATGACTTAAACATTTTGAATTTAGTCCCTTTCATTTTAACAATTTTTATATATCTTAGAAATGTGACCACCCATAAGGATTGAATGTAGGGGTGTTCAAATGACCCAACAACCCGAAACTCATACTACCCAACTTGAGTTATAAGGATTGGGTTGGGTTAGTTTAAAATTTGGGTTGGATTAGTTTTTTTTTTTTTTTTTTTGTATTTTTCGGGTTGGGTCGGGTCTCATGTTGCAAATTTGAAAAATTCGAGTTAACCCAACCCAAGTTATAATTTTAAAATATATATGTGTGTGTGTGTGTGTGTGTGTATTATAAGTTCTCATTCTAGGGTTCTTAAGGTCTCCCAACTCTCTACTCTCAACTTAAAGCTTCTGCCACCTGCCTCCAAGTGCCAACTGCAGTCGTTCATTTGCCGTTGTTTGTCTTCCATTGTTCCTCTCACATTGTTCGTTTGCTCCTCACCGCTCGTCTACCACTCAAATCCAGCTCTCTACCATTCGTCTATCGTAGTTTTGCCATTCATCTATCTACCGTTCTGTCGGTTCCTCTGCAACTTCATTCATGTATTGTTTTTTTTAAAAAAAAAAAAAAGAAGAAGAAAAAAACCAACAACCCAACCCAATTTTTAGGGTTGGTTCAAAAAAATGTCCCCAACCCAATTTCTCTACACCCCTAATTGAATGTATTCTTTTTACTCAAAAAAAAGGAAAAAAAAACAGTTATACAAAATAAATAAACTATTACTATTTCTGTTATTATTAAATTAAGAAGGGAGACCACACCACAATTAAGAGCAAAAAGAAAAATTAACAAGTACTCATTCTCCAAGTTCAGATCCCTCGTACCCTCTCGTATACTTAAAAAAAATATGCATTTATATATTTTATTATTATTTTTTTTATAGTTTATCGTTTTACTTTTTAAATTTTAATAGGGTTGTTTTTAAATATAGCAAAATGAGTCTAATTATTTACAAATATAGAAAAATTTCACTGTCTATCAATGATAGACTACAATAGATTGTGATAGACTTCTATCAAGAAAGAAAGAAAGAAGTCTATCGCGGATAGACAGTGAAATTTTTCTATATTTCTAAATAGTTTCATATTTTTTTCTATTTGTAATAATTTTCCATTTTATTAATAGTCTATTGTATTCATTGACGTATAATGTTTTTCCAAATATAACATTAATATTATAAAAAAATTATAGTAAATGGCAAAATTAGCCAAACTATTTATTGCCTATTGTATTCATTGATGAACCTTCAAGTTTGTTAAGTTAATTAGTAATTGACGTTGCAGTGGGAGCCAAGATTGTTGTGTTTGTCTTCAAGTAGAAGGATTTATTGAGCCAAACCAAGTTGTATGTAATGGTAGATGGGTTGCTAAAGCATCATTGGAGAATTTAGAGTGTATTTGGTTTAACTTTTCAAGTGTTTATCTTTGAAAAGTCAATTTGGAAAACGTTAGAGTGTTTGACAACTACTCAAAAATAACTTTTGAAAAAGTGAATTTATGAAATAAGTTGGTTTGAGAGAAACACTTGAAATCAATTTTTTAAAAGATGAAGTGTTTAATGGTTTGTCTCATGTATAATACATAAAATTATCAAAATACTCTTACTATTCATATATCTCACTACCACCATATATATATGATTGTTGTTGGCTACCACCACCTTTCGATAACCATCTATGATGACCAACTCTAGCGATCACCACCGAGAACCAACTCCAATGACCACATATGACGACCATGTTGAACAACCACCTCTAGCAACTAACGTTGATAACCATCTCCAACAACCAACTCTGACAACTACCATCAGCATCCACCTTTAGCACCTAACTCTGGCAATCATCTCTTGCATCCATCTTTGATGACTAACTATGATGACCAACCTGAGACGACCAACTCCAATGCCCATCTTTGTTAATTGCCTCTAACAATCAACTTTGGCGACCATCTCTGACAACCACCTATGATGTTTTATATGAATTTTTAAATTAATAGTTATTTTTAAGTTTTCAATTAAGGTTTTATTGATGATTTTATGTCACGAGCATCAACAAAATAAAAAAACTCATGTGTCAACAAAATCCAAATTTGTAGTAGTCATAATCTAAAATAATGGTCATTTGAGTTGGTGGAGTGGTTGCCGTCAAAAATCACCAAAGTTGGCCATCAACAGTGGTGATTGGATGTTGCTAGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCGTTGGAGGTGGTCACATGAAGTTGGTCGTCGGAGGTGAGTAACAAGGCATTCGTGGTGATGAGGGTTGAGTGCACTGTTAGTAAACATGATCTAAAATGTTAGTAACATACAAAGTTGGTCTCGCAAACAATGAGTTGAATTCATATCTCCCCAAACACTCTCTTAATTATTAAGATCCTTTGACACTTTAACCGACAAGAGACTTTTAACATAACAAAACAGATTGTCAACTCTCTCTCTCTTGTACACTAGTTATTGTAGGCTTGGGTTTTAATCTATGCCTTCAAAACTCTCTCTTTCTGCAGGTACCCTTAACCACAGAAATTAAAGGCATCCACCAGAAACACCAAAATCACTTTGTGTTGTGTCTTCTCAAATGCTCAAATTATTTGGAAGAAGGGTTGCAGATCTGATGATGATTTCTCTTCTTCTTCTATTTCTCTTCTTCATTTATTCATCAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACAAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA
mRNA sequence
ATGGAGTTTTGCAGTAATAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAATGGAGAAGAAAGAAATCAAATATGGTCGCGAATTTGGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCGTTGGAGGTGGTCACATGAAGTTGGTCGTCGGAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACAAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA
Coding sequence (CDS)
ATGGAGTTTTGCAGTAATAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAATGGAGAAGAAAGAAATCAAATATGGTCGCGAATTTGGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCGTTGGAGGTGGTCACATGAAGTTGGTCGTCGGAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACAAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA
Protein sequence
MEFCSNREGVKRRRKKIECGDEPATDNGSDGEGEGRMEKKEIKYGREFGVGHWQWLPKLAVGGGHMKLVVGASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP
Homology
BLAST of CcUC02G017820.1 vs. NCBI nr
Match:
XP_019092499.1 (PREDICTED: protein IDA-LIKE 4 [Camelina sativa])
HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0
Query: 72 ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
+SSV N+++N ++ + HF GFFP R P+P+S PSRKHNDIG Q W SP
Sbjct: 40 SSSVFYRNPNYDHNNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92
BLAST of CcUC02G017820.1 vs. NCBI nr
Match:
XP_019096306.1 (PREDICTED: protein IDA-LIKE 4-like [Camelina sativa])
HSP 1 Score: 58.5 bits (140), Expect = 4.6e-05
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0
Query: 72 ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
++SV N+++N ++ + HF GFFP R P+P+S PSRKHNDIG Q W SP
Sbjct: 40 STSVFYRNPNYDHNNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92
BLAST of CcUC02G017820.1 vs. NCBI nr
Match:
KMT09205.1 (hypothetical protein BVRB_6g133070 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 58.5 bits (140), Expect = 4.6e-05
Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 0
Query: 77 SHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
+H N P HF GFFPKR P+PSS PSRKHND+G Q W SP
Sbjct: 11 THVFRFNPRPRYSNSGHFLGFFPKR-YPVPSSAPSRKHNDLGLQNWRSP 58
BLAST of CcUC02G017820.1 vs. NCBI nr
Match:
TKY73857.1 (IDA 2 [Spatholobus suberectus])
HSP 1 Score: 58.2 bits (139), Expect = 6.1e-05
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query: 86 PTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
P S HF+GFFP+R IPIP S+PS+KHNDIG Q+W SP
Sbjct: 39 PKSQHTGHFFGFFPRR-IPIPYSSPSKKHNDIGLQSWRSP 77
BLAST of CcUC02G017820.1 vs. NCBI nr
Match:
XP_019096717.1 (PREDICTED: protein IDA-LIKE 4-like [Camelina sativa])
HSP 1 Score: 57.8 bits (138), Expect = 7.9e-05
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0
Query: 72 ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
+SSV N++++ ++ + HF GFFP R P+P+S PSRKHNDIG Q W SP
Sbjct: 40 SSSVFYRNPNYDHHNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92
BLAST of CcUC02G017820.1 vs. ExPASy Swiss-Prot
Match:
Q6DUW6 (Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1)
HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0
Query: 72 ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
+SSV N++++ ++ + HF GF P R +P+P+S PSRKHNDIG Q SP
Sbjct: 41 SSSVFYRNPNYDHSNNTVRRGHFLGFLP-RHLPVPASAPSRKHNDIGIQALLSP 93
BLAST of CcUC02G017820.1 vs. ExPASy Swiss-Prot
Match:
Q6DUW9 (Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1)
HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0
Query: 76 SSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTW 123
S HN+ +S TK F GF P R P+P+S PSRKHNDIG +W
Sbjct: 46 SKPHKKHNDAVSSSTK-QFLGFLP-RHFPVPASGPSRKHNDIGLLSW 90
BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match:
A0A0A0LK15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302050 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0
Query: 72 ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPS 125
+S SS+FS + NN TKPHFYGFFPKR IPIPSSTPSRKHNDIGFQTWPS
Sbjct: 39 SSLSSSYFSKNYNNNNPTTKPHFYGFFPKRTIPIPSSTPSRKHNDIGFQTWPS 91
BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match:
A0A7C8Z3J5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0
Query: 82 HNNNPTSLTKPHFY-GFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
H TS HF+ GFFPKR P+P+S PSRKHND+G Q W SP
Sbjct: 58 HRFPSTSRNSAHFFLGFFPKRQFPVPASAPSRKHNDLGLQNWRSP 102
BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match:
A0A7C8Z397 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0
Query: 82 HNNNPTSLTKPHFY-GFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
H TS HF+ GFFPKR P+P+S PSRKHND+G Q W SP
Sbjct: 57 HRFPSTSRNSAHFFLGFFPKRQFPVPASAPSRKHNDLGLQNWRSP 101
BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match:
A0A151TLA3 (Protein IDA-LIKE 2 OS=Cajanus cajan OX=3821 GN=KK1_024188 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 6.5e-05
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 0
Query: 86 PTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
P S HF+GF PKR +PIP STPSRKHNDIG ++W SP
Sbjct: 37 PKSQHHGHFFGFLPKR-MPIPYSTPSRKHNDIGLRSWRSP 75
BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match:
A0A165XM75 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014344 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 6.5e-05
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0
Query: 73 SSVSSHFSNHNNNPTSLTKPH-----FYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
S ++SH N+ ++ +S P F GF P+R IP+P+S+PSRKHNDIG Q+W SP
Sbjct: 36 SRINSHVFNYKSSSSSSIPPSSSSIGFLGFLPRR-IPLPTSSPSRKHNDIGLQSWTSP 92
BLAST of CcUC02G017820.1 vs. TAIR 10
Match:
AT3G18715.1 (inflorescence deficient in abscission (IDA)-like 4 )
HSP 1 Score: 50.8 bits (120), Expect = 9.0e-07
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0
Query: 72 ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
+SSV N++++ ++ + HF GF P R +P+P+S PSRKHNDIG Q SP
Sbjct: 41 SSSVFYRNPNYDHSNNTVRRGHFLGFLP-RHLPVPASAPSRKHNDIGIQALLSP 93
BLAST of CcUC02G017820.1 vs. TAIR 10
Match:
AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )
HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0
Query: 76 SSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTW 123
S HN+ +S TK F GF P R P+P+S PSRKHNDIG +W
Sbjct: 46 SKPHKKHNDAVSSSTK-QFLGFLP-RHFPVPASGPSRKHNDIGLLSW 90
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q6DUW6 | 1.3e-05 | 46.30 | Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1 | [more] |
| Q6DUW9 | 3.1e-04 | 51.06 | Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LK15 | 7.0e-15 | 77.36 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302050 PE=4 SV=1 | [more] |
| A0A7C8Z3J5 | 2.3e-05 | 57.78 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
| A0A7C8Z397 | 2.3e-05 | 57.78 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
| A0A151TLA3 | 6.5e-05 | 65.00 | Protein IDA-LIKE 2 OS=Cajanus cajan OX=3821 GN=KK1_024188 PE=4 SV=1 | [more] |
| A0A165XM75 | 6.5e-05 | 48.28 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014344 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G18715.1 | 9.0e-07 | 46.30 | inflorescence deficient in abscission (IDA)-like 4 | [more] |
| AT5G64667.1 | 2.2e-05 | 51.06 | inflorescence deficient in abscission (IDA)-like 2 | [more] |
