CcUC02G017820.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC02G017820.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein IDA-LIKE 2
Location	CicolChr02: 639008 .. 643397 (+)
Sequence length	378
RNA-Seq Expression	CcUC02G017820.1
Synteny	CcUC02G017820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTGCAGTAATAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAATGGAGAAGAAAGAAATCAAATATGGTCGCGAATTTGGGTATGTCTGCCGCAGGGAAATACAGAAAAAAAGAAGCTTTGGGTTTTAGGGTTTACGTTCTTATTTGAGTTTTCTACACACTATTGTTTTATCACTATTTTCAATTTTTTAATTTTTTAATATTTTGTTCATATTTTATTTCAATATAATCATTTTTAAAATTATTCAGAGCCCCGTTTAGTCGGAGATATTGTTTGATATGGATAAATCTCTTAAATTTAAATCTGTGAGATGGATAAGCAAAACCATAAATGTTAAATATGTGTTTGATTTACCAATTTTATATATAAAAAATAAAATTAAATAATTATTTAATTAAATGAAAGAGAACAAATAACCTAGTCATAAATTTTTAGTATTATTTACTATATTATTATATTAAATAATTATTTAATCACTGAAAAATTAAAAATATAATATGGTTGATTGTTTTAAATGGTAAAAATTGCTCCAAATATTTTCAAATATAATAAAATGTCATTATCTATTGATAATATACATCTATTAGTGTTTATATATCAATGACATTTTGCTATATTTGTAAATATGTTGGCTCATTTTGATATATTTGAAAATAATTTTAATTAATATTAATTTATTAATTAATTAGACTATATATTTTAGTGTTATCTCTGGCATGTATGTTGGGTATTAGAAAATTCATATCAAGTGCATTTTAAAGTTTCTTGGATAATAGTATCCTAGGTTTTAAAAAGTGAAATTATGTGAAACAAACAAGGATATTAAATATTTGTCTAAAATTCTATGGCAAAACTATGAAACAAACGGGCCCTAGAATTATTTTTATACATTCTTATAATATAATTTTGATAAAAATATCAATTCATAGTAGTTTGTGCCAATTTAAACCTTGAATATTAACTTAACCCTAAACTTTTGTAAGTGTATTAATTTGCACATTCTATAGTTGTATCGATTAAACCAATAAACTTACATAAATTAATCAATTTGGACTCTTAATCAGAATTTTCTTTAAGAAGTTCATTATTTACTCTAATTGTCTATTTCGTAAAATCAACATTTGAAAAGTCTACACACATTTGAGAATAAATGCATGAATAATTAAAAATGTAATTGACTGAAATCATAAGTTTCAAAAGATATTGATTGAAGAAAATCTAGAGCAGATGTAAATCACTTACGAAAATTTAGGTTTAAATTGATACCATTCTTAGTTTAGAGTTTTAATTGATACAACCTCCAAAGTTTAGAAGTAAATTGATATTTACCTTATATTCTTTTAGTTATTTGAATATTTTTATGAATTAAAATATATGACTTTTTTAAGAAGGATTAAAATGTATGGGTTAGCCTCTAATATTTGAGTGTTTTTTTAACTTAGTCAAAATGACTTAAACATTTTGAATTTAGTCCCTTTCATTTTAACAATTTTTATATATCTTAGAAATGTGACCACCCATAAGGATTGAATGTAGGGGTGTTCAAATGACCCAACAACCCGAAACTCATACTACCCAACTTGAGTTATAAGGATTGGGTTGGGTTAGTTTAAAATTTGGGTTGGATTAGTTTTTTTTTTTTTTTTTTTGTATTTTTCGGGTTGGGTCGGGTCTCATGTTGCAAATTTGAAAAATTCGAGTTAACCCAACCCAAGTTATAATTTTAAAATATATATGTGTGTGTGTGTGTGTGTGTGTATTATAAGTTCTCATTCTAGGGTTCTTAAGGTCTCCCAACTCTCTACTCTCAACTTAAAGCTTCTGCCACCTGCCTCCAAGTGCCAACTGCAGTCGTTCATTTGCCGTTGTTTGTCTTCCATTGTTCCTCTCACATTGTTCGTTTGCTCCTCACCGCTCGTCTACCACTCAAATCCAGCTCTCTACCATTCGTCTATCGTAGTTTTGCCATTCATCTATCTACCGTTCTGTCGGTTCCTCTGCAACTTCATTCATGTATTGTTTTTTTTAAAAAAAAAAAAAAGAAGAAGAAAAAAACCAACAACCCAACCCAATTTTTAGGGTTGGTTCAAAAAAATGTCCCCAACCCAATTTCTCTACACCCCTAATTGAATGTATTCTTTTTACTCAAAAAAAAGGAAAAAAAAACAGTTATACAAAATAAATAAACTATTACTATTTCTGTTATTATTAAATTAAGAAGGGAGACCACACCACAATTAAGAGCAAAAAGAAAAATTAACAAGTACTCATTCTCCAAGTTCAGATCCCTCGTACCCTCTCGTATACTTAAAAAAAATATGCATTTATATATTTTATTATTATTTTTTTTATAGTTTATCGTTTTACTTTTTAAATTTTAATAGGGTTGTTTTTAAATATAGCAAAATGAGTCTAATTATTTACAAATATAGAAAAATTTCACTGTCTATCAATGATAGACTACAATAGATTGTGATAGACTTCTATCAAGAAAGAAAGAAAGAAGTCTATCGCGGATAGACAGTGAAATTTTTCTATATTTCTAAATAGTTTCATATTTTTTTCTATTTGTAATAATTTTCCATTTTATTAATAGTCTATTGTATTCATTGACGTATAATGTTTTTCCAAATATAACATTAATATTATAAAAAAATTATAGTAAATGGCAAAATTAGCCAAACTATTTATTGCCTATTGTATTCATTGATGAACCTTCAAGTTTGTTAAGTTAATTAGTAATTGACGTTGCAGTGGGAGCCAAGATTGTTGTGTTTGTCTTCAAGTAGAAGGATTTATTGAGCCAAACCAAGTTGTATGTAATGGTAGATGGGTTGCTAAAGCATCATTGGAGAATTTAGAGTGTATTTGGTTTAACTTTTCAAGTGTTTATCTTTGAAAAGTCAATTTGGAAAACGTTAGAGTGTTTGACAACTACTCAAAAATAACTTTTGAAAAAGTGAATTTATGAAATAAGTTGGTTTGAGAGAAACACTTGAAATCAATTTTTTAAAAGATGAAGTGTTTAATGGTTTGTCTCATGTATAATACATAAAATTATCAAAATACTCTTACTATTCATATATCTCACTACCACCATATATATATGATTGTTGTTGGCTACCACCACCTTTCGATAACCATCTATGATGACCAACTCTAGCGATCACCACCGAGAACCAACTCCAATGACCACATATGACGACCATGTTGAACAACCACCTCTAGCAACTAACGTTGATAACCATCTCCAACAACCAACTCTGACAACTACCATCAGCATCCACCTTTAGCACCTAACTCTGGCAATCATCTCTTGCATCCATCTTTGATGACTAACTATGATGACCAACCTGAGACGACCAACTCCAATGCCCATCTTTGTTAATTGCCTCTAACAATCAACTTTGGCGACCATCTCTGACAACCACCTATGATGTTTTATATGAATTTTTAAATTAATAGTTATTTTTAAGTTTTCAATTAAGGTTTTATTGATGATTTTATGTCACGAGCATCAACAAAATAAAAAAACTCATGTGTCAACAAAATCCAAATTTGTAGTAGTCATAATCTAAAATAATGGTCATTTGAGTTGGTGGAGTGGTTGCCGTCAAAAATCACCAAAGTTGGCCATCAACAGTGGTGATTGGATGTTGCTAGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCGTTGGAGGTGGTCACATGAAGTTGGTCGTCGGAGGTGAGTAACAAGGCATTCGTGGTGATGAGGGTTGAGTGCACTGTTAGTAAACATGATCTAAAATGTTAGTAACATACAAAGTTGGTCTCGCAAACAATGAGTTGAATTCATATCTCCCCAAACACTCTCTTAATTATTAAGATCCTTTGACACTTTAACCGACAAGAGACTTTTAACATAACAAAACAGATTGTCAACTCTCTCTCTCTTGTACACTAGTTATTGTAGGCTTGGGTTTTAATCTATGCCTTCAAAACTCTCTCTTTCTGCAGGTACCCTTAACCACAGAAATTAAAGGCATCCACCAGAAACACCAAAATCACTTTGTGTTGTGTCTTCTCAAATGCTCAAATTATTTGGAAGAAGGGTTGCAGATCTGATGATGATTTCTCTTCTTCTTCTATTTCTCTTCTTCATTTATTCATCAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACAAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA

mRNA sequence

ATGGAGTTTTGCAGTAATAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAATGGAGAAGAAAGAAATCAAATATGGTCGCGAATTTGGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCGTTGGAGGTGGTCACATGAAGTTGGTCGTCGGAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACAAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA

Coding sequence (CDS)

ATGGAGTTTTGCAGTAATAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAATGGAGAAGAAAGAAATCAAATATGGTCGCGAATTTGGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCGTTGGAGGTGGTCACATGAAGTTGGTCGTCGGAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACAAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA

Protein sequence

MEFCSNREGVKRRRKKIECGDEPATDNGSDGEGEGRMEKKEIKYGREFGVGHWQWLPKLAVGGGHMKLVVGASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP

Homology

[Close]

BLAST of CcUC02G017820.1 vs. NCBI nr
Match: XP_019092499.1 (PREDICTED: protein IDA-LIKE 4 [Camelina sativa])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 72  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           +SSV     N+++N  ++ + HF GFFP R  P+P+S PSRKHNDIG Q W SP
Sbjct: 40  SSSVFYRNPNYDHNNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92

[Close]

BLAST of CcUC02G017820.1 vs. NCBI nr
Match: XP_019096306.1 (PREDICTED: protein IDA-LIKE 4-like [Camelina sativa])

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-05
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 72  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           ++SV     N+++N  ++ + HF GFFP R  P+P+S PSRKHNDIG Q W SP
Sbjct: 40  STSVFYRNPNYDHNNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92

[Close]

BLAST of CcUC02G017820.1 vs. NCBI nr
Match: KMT09205.1 (hypothetical protein BVRB_6g133070 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-05
Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 77  SHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           +H    N  P      HF GFFPKR  P+PSS PSRKHND+G Q W SP
Sbjct: 11  THVFRFNPRPRYSNSGHFLGFFPKR-YPVPSSAPSRKHNDLGLQNWRSP 58

[Close]

BLAST of CcUC02G017820.1 vs. NCBI nr
Match: TKY73857.1 (IDA 2 [Spatholobus suberectus])

HSP 1 Score: 58.2 bits (139), Expect = 6.1e-05
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 86  PTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           P S    HF+GFFP+R IPIP S+PS+KHNDIG Q+W SP
Sbjct: 39  PKSQHTGHFFGFFPRR-IPIPYSSPSKKHNDIGLQSWRSP 77

[Close]

BLAST of CcUC02G017820.1 vs. NCBI nr
Match: XP_019096717.1 (PREDICTED: protein IDA-LIKE 4-like [Camelina sativa])

HSP 1 Score: 57.8 bits (138), Expect = 7.9e-05
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 72  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           +SSV     N++++  ++ + HF GFFP R  P+P+S PSRKHNDIG Q W SP
Sbjct: 40  SSSVFYRNPNYDHHNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92

[Close]

BLAST of CcUC02G017820.1 vs. ExPASy Swiss-Prot
Match: Q6DUW6 (Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 72  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           +SSV     N++++  ++ + HF GF P R +P+P+S PSRKHNDIG Q   SP
Sbjct: 41  SSSVFYRNPNYDHSNNTVRRGHFLGFLP-RHLPVPASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of CcUC02G017820.1 vs. ExPASy Swiss-Prot
Match: Q6DUW9 (Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 76  SSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTW 123
           S     HN+  +S TK  F GF P R  P+P+S PSRKHNDIG  +W
Sbjct: 46  SKPHKKHNDAVSSSTK-QFLGFLP-RHFPVPASGPSRKHNDIGLLSW 90

[Close]

BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match: A0A0A0LK15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302050 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 72  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPS 125
           +S  SS+FS + NN    TKPHFYGFFPKR IPIPSSTPSRKHNDIGFQTWPS
Sbjct: 39  SSLSSSYFSKNYNNNNPTTKPHFYGFFPKRTIPIPSSTPSRKHNDIGFQTWPS 91

[Close]

BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match: A0A7C8Z3J5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 82  HNNNPTSLTKPHFY-GFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           H    TS    HF+ GFFPKR  P+P+S PSRKHND+G Q W SP
Sbjct: 58  HRFPSTSRNSAHFFLGFFPKRQFPVPASAPSRKHNDLGLQNWRSP 102

[Close]

BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match: A0A7C8Z397 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 82  HNNNPTSLTKPHFY-GFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           H    TS    HF+ GFFPKR  P+P+S PSRKHND+G Q W SP
Sbjct: 57  HRFPSTSRNSAHFFLGFFPKRQFPVPASAPSRKHNDLGLQNWRSP 101

[Close]

BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match: A0A151TLA3 (Protein IDA-LIKE 2 OS=Cajanus cajan OX=3821 GN=KK1_024188 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.5e-05
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 86  PTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           P S    HF+GF PKR +PIP STPSRKHNDIG ++W SP
Sbjct: 37  PKSQHHGHFFGFLPKR-MPIPYSTPSRKHNDIGLRSWRSP 75

[Close]

BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL
Match: A0A165XM75 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014344 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.5e-05
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 73  SSVSSHFSNHNNNPTSLTKPH-----FYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           S ++SH  N+ ++ +S   P      F GF P+R IP+P+S+PSRKHNDIG Q+W SP
Sbjct: 36  SRINSHVFNYKSSSSSSIPPSSSSIGFLGFLPRR-IPLPTSSPSRKHNDIGLQSWTSP 92

[Close]

BLAST of CcUC02G017820.1 vs. TAIR 10
Match: AT3G18715.1 (inflorescence deficient in abscission (IDA)-like 4 )

HSP 1 Score: 50.8 bits (120), Expect = 9.0e-07
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 72  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 126
           +SSV     N++++  ++ + HF GF P R +P+P+S PSRKHNDIG Q   SP
Sbjct: 41  SSSVFYRNPNYDHSNNTVRRGHFLGFLP-RHLPVPASAPSRKHNDIGIQALLSP 93

[Close]

BLAST of CcUC02G017820.1 vs. TAIR 10
Match: AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 76  SSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTW 123
           S     HN+  +S TK  F GF P R  P+P+S PSRKHNDIG  +W
Sbjct: 46  SKPHKKHNDAVSSSTK-QFLGFLP-RHFPVPASGPSRKHNDIGLLSW 90

The following BLAST results are available for this feature:

BLAST of CcUC02G017820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019092499.1	2.1e-05	51.85	PREDICTED: protein IDA-LIKE 4 [Camelina sativa]	[more]
XP_019096306.1	4.6e-05	50.00	PREDICTED: protein IDA-LIKE 4-like [Camelina sativa]	[more]
KMT09205.1	4.6e-05	55.10	hypothetical protein BVRB_6g133070 [Beta vulgaris subsp. vulgaris]	[more]
TKY73857.1	6.1e-05	65.00	IDA 2 [Spatholobus suberectus]	[more]
XP_019096717.1	7.9e-05	50.00	PREDICTED: protein IDA-LIKE 4-like [Camelina sativa]	[more]

BLAST of CcUC02G017820.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DUW6	1.3e-05	46.30	Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1	[more]
Q6DUW9	3.1e-04	51.06	Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1	[more]

BLAST of CcUC02G017820.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK15	7.0e-15	77.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302050 PE=4 SV=1	[more]
A0A7C8Z3J5	2.3e-05	57.78	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A7C8Z397	2.3e-05	57.78	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A151TLA3	6.5e-05	65.00	Protein IDA-LIKE 2 OS=Cajanus cajan OX=3821 GN=KK1_024188 PE=4 SV=1	[more]
A0A165XM75	6.5e-05	48.28	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014344 ...	[more]

BLAST of CcUC02G017820.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18715.1	9.0e-07	46.30	inflorescence deficient in abscission (IDA)-like 4	[more]
AT5G64667.1	2.2e-05	51.06	inflorescence deficient in abscission (IDA)-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..125
None	No IPR available	PANTHER	PTHR33599:SF14	PROTEIN IDA-LIKE 4	coord: 72..125
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 72..125

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC02G017820	CcUC02G017820	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G017820.1-exon	CcUC02G017820.1-exon-CicolChr02:639008..639153	exon
CcUC02G017820.1-exon	CcUC02G017820.1-exon-CicolChr02:642738..642805	exon
CcUC02G017820.1-exon	CcUC02G017820.1-exon-CicolChr02:643234..643397	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC02G017820.1-cds	CcUC02G017820.1-cds-CicolChr02:639008..639153	CDS
CcUC02G017820.1-cds	CcUC02G017820.1-cds-CicolChr02:642738..642805	CDS
CcUC02G017820.1-cds	CcUC02G017820.1-cds-CicolChr02:643234..643397	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC02G017820.1	CcUC02G017820.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0016020	membrane