CcUC01G008450.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC01G008450.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Tetratricopeptide-like helical
Location	CicolChr01: 9015218 .. 9016406 (+)
Sequence length	600
RNA-Seq Expression	CcUC01G008450.1
Synteny	CcUC01G008450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGTCTTCCTCCCATGCATCGTCGCCGGAGAGTCACTGCTTCGAGGCTCTATTAGGGTCCCTTCGTCCCTTCCTCCGCGGGGAGCTTGAAAAGGTAAACATGAACCTTCCATCTCTCATTTCCCTCCTCCGCTCCGTCGGTGCTGGGGAGTGCTGGCACAAGCACGGCACCTTCCTCGATCACCTCGTTGATACCTACCGTATTCTCAACATTTGGAAAGCACAAGAGTCGGTTTGTCTATGCGGCCTATTTCACTCAGCTTAGTCCAATTCCTATCAATCCTTCTACTGGTCGTTGGTGCCCATGTCGGAGAAGCGGCGGAGAGACTGATTCATTTGTTTTGTACCATCCCTCGGCATCAATTGATTCATGACGATCTTCTTTTCCACTAATCTGATTCAGAACTCGTCAATCACCTCAAGTTCTCCGAGACATCGCTCAAGAACGCCCTAGAAAATGGACATTTCAACGACGATGAAACTTGGAGGAAGAACTGCAGTCCATTCTTCCAGCCGATGGCATAAGCATAAAGCACATCAGAACTGGAGAAGATGTAATGGTTTTGAGGCGAGTAGTTGCAATTTTTCTCATGTTGACAATAGCCGATTGCAGCGATTAATTCTACGAATTCCAAGATTCGTTATTCGAAAACTCCAATGGGCGTCTCGAATTCACAGGTAACAATTACAAATCTCTCTGGCCTGGAAACGGAAAGCCTGGACTATGGATGAACTCTGCATCAAGAATGGGAGCGATATACTCCCTGATCGCGAGAGAGGAAGCAATTTTAATCGCACATAGAAAGAGAAACGGGGAATTAGGGGTGAAAACAGAGAGAGACGAGGATTTAGAGCTGGTAATTCCCCCAATTTTTGAGAACTGCACGAGAATTCTTGACCCAAAGGATCAAATTACGGCAAGAGATTTGTACTGGGAAGGTGTTTGTGAAATGTCGGAAAGAAGGGAGGAGTTGTTGTAGAGATGCGTAGAGAAGAATCCTTTTGTTGGGGAGCCACATGTGGCATTGGGACAGTTGTATTTGGGTGAAGGGCGGTTTGAGGAGGCTGAAAAGGAAGTTGAGGAAGGGCTAAGGCTGTTGCTAACATGGGGCAGTGCTTGGGACAAGAGGATGCCATGGCAGCCTTTGATTGCTTGGGGTAGAGTGTTGTTGATGAAAGGCTAA

mRNA sequence

ATGTCGTCGTCTTCCTCCCATGCATCGTCGCCGGAGAGTCACTGCTTCGAGGCTCTATTAGGGTCCCTTCGTCCCTTCCTCCGCGGGGAGCTTGAAAAGGTAAACATGAACCTTCCATCTCTCATTTCCCTCCTCCGCTCCGTCGGTGCTGGGGAGTGCTGGCACAAGCACGGCACCTTCCTCGATCACCTCGTTGATACCTACCGTAACAATTACAAATCTCTCTGGCCTGGAAACGGAAAGCCTGGACTATGGATGAACTCTGCATCAAGAATGGGAGCGATATACTCCCTGATCGCGAGAGAGGAAGCAATTTTAATCGCACATAGAAAGAGAAACGGGGAATTAGGGGTGAAAACAGAGAGAGACGAGGATTTAGAGCTGGTAATTCCCCCAATTTTTGAGAACTGCACGAGAATTCTTGACCCAAAGGATCAAATTACGGCAAGAGATTTGTACTGGGAAGGGCGGTTTGAGGAGGCTGAAAAGGAAGTTGAGGAAGGGCTAAGGCTGTTGCTAACATGGGGCAGTGCTTGGGACAAGAGGATGCCATGGCAGCCTTTGATTGCTTGGGGTAGAGTGTTGTTGATGAAAGGCTAA

Coding sequence (CDS)

ATGTCGTCGTCTTCCTCCCATGCATCGTCGCCGGAGAGTCACTGCTTCGAGGCTCTATTAGGGTCCCTTCGTCCCTTCCTCCGCGGGGAGCTTGAAAAGGTAAACATGAACCTTCCATCTCTCATTTCCCTCCTCCGCTCCGTCGGTGCTGGGGAGTGCTGGCACAAGCACGGCACCTTCCTCGATCACCTCGTTGATACCTACCGTAACAATTACAAATCTCTCTGGCCTGGAAACGGAAAGCCTGGACTATGGATGAACTCTGCATCAAGAATGGGAGCGATATACTCCCTGATCGCGAGAGAGGAAGCAATTTTAATCGCACATAGAAAGAGAAACGGGGAATTAGGGGTGAAAACAGAGAGAGACGAGGATTTAGAGCTGGTAATTCCCCCAATTTTTGAGAACTGCACGAGAATTCTTGACCCAAAGGATCAAATTACGGCAAGAGATTTGTACTGGGAAGGGCGGTTTGAGGAGGCTGAAAAGGAAGTTGAGGAAGGGCTAAGGCTGTTGCTAACATGGGGCAGTGCTTGGGACAAGAGGATGCCATGGCAGCCTTTGATTGCTTGGGGTAGAGTGTTGTTGATGAAAGGCTAA

Protein sequence

MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTFLDHLVDTYRNNYKSLWPGNGKPGLWMNSASRMGAIYSLIAREEAILIAHRKRNGELGVKTERDEDLELVIPPIFENCTRILDPKDQITARDLYWEGRFEEAEKEVEEGLRLLLTWGSAWDKRMPWQPLIAWGRVLLMKG

Homology

[Close]

BLAST of CcUC01G008450.1 vs. NCBI nr
Match: XP_038875815.1 (uncharacterized protein LOC120068183 [Benincasa hispida])

HSP 1 Score: 290.8 bits (743), Expect = 8.9e-75
Identity = 183/403 (45.41%), Postives = 186/403 (46.15%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           MSSSSSHASS ESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKH TF
Sbjct: 1   MSSSSSHASSSESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHSTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVDTYR                                                   
Sbjct: 61  LDHLVDTYRILKIWKAQESVCLCGLFHSAYSNSYTNLAIFDHSIGRDVVRGHVGAAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCTIPRHQLIHDDLLFRYSDSELVDHLKFSDTSLKNALENGYFNNDETWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PADGVTVKHIKTGEDVMISRRVVAIFLMLTIADFSDQFYEFQDSLFENSNGRLEFIGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. NCBI nr
Match: KAA0066113.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa] >TYK15152.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 7.0e-72
Identity = 175/403 (43.42%), Postives = 185/403 (45.91%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSSHASSPE+H  E LLGS+RPFLRGELEKVN +LPSLIS+LRSVGAGECWHKHGTF
Sbjct: 1   MPSSSSHASSPETHRLEPLLGSIRPFLRGELEKVNPDLPSLISVLRSVGAGECWHKHGTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 61  LDHLVDIYRILKIWKAQEPVCLCGLFHSAYSNSYVNLAIFNPSTGRDVVRGHVGEAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCIVPRQSLIHDDLLFHYSDSELVDHLKFSNTSLKNALENGHLNEDETWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PANGVTVKHIKTGEDVTVSRRVVAIFLMMTVADFSDQLFGFQDSLFENTNGRLEFPGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. NCBI nr
Match: XP_004150197.1 (uncharacterized protein LOC101221411 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 9.2e-72
Identity = 175/403 (43.42%), Postives = 184/403 (45.66%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSSHASSPE+H  E LLGS+RPFLRGELEKVN  LPSLIS+LRSVGAGECWHKHGTF
Sbjct: 1   MPSSSSHASSPETHRLEPLLGSIRPFLRGELEKVNPILPSLISVLRSVGAGECWHKHGTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 61  LDHLVDIYRILKIWKAQEPVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGEAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCIVPRQSLIHDDLLFHYSDSELVDHLKFSNTSLKNALENGHFNEDETWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PANGVTVKHIKTGEDVTVSRRVVAIFLMMTIADFSDQLFGFQDSLFENTNGRLEFPGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. NCBI nr
Match: XP_008465339.1 (PREDICTED: uncharacterized protein LOC103502980 [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 9.2e-72
Identity = 174/403 (43.18%), Postives = 185/403 (45.91%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSSHASSPE+H  E LLGS+RPFLRGELEKVN +LPSLIS+LRSVGAGECWHKHGTF
Sbjct: 1   MPSSSSHASSPETHRLEPLLGSIRPFLRGELEKVNPDLPSLISVLRSVGAGECWHKHGTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 61  LDHLVDIYRILKIWKAQEPVCLCGLFHSAYSNSYVNLAIFNPSTGRDVVRGHVGEAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCIVPRQSLIHDDLLFHYSDSELVDHLKFSNTSLKNALENGHLNEDETWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PANGVTVKHIKTGEDVTVSRRVVAIFLMMTIADFSDQLFGFQDSLFENTNGRLEFPGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. NCBI nr
Match: KAE8648381.1 (hypothetical protein Csa_023296 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 9.2e-72
Identity = 175/403 (43.42%), Postives = 184/403 (45.66%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSSHASSPE+H  E LLGS+RPFLRGELEKVN  LPSLIS+LRSVGAGECWHKHGTF
Sbjct: 40  MPSSSSHASSPETHRLEPLLGSIRPFLRGELEKVNPILPSLISVLRSVGAGECWHKHGTF 99

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 100 LDHLVDIYRILKIWKAQEPVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGEAAERL 159

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 160 IHLFCIVPRQSLIHDDLLFHYSDSELVDHLKFSNTSLKNALENGHFNEDETWRKKLQSIL 219

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 220 PANGVTVKHIKTGEDVTVSRRVVAIFLMMTIADFSDQLFGFQDSLFENTNGRLEFPGNNY 279

[Close]

BLAST of CcUC01G008450.1 vs. ExPASy TrEMBL
Match: A0A5D3CUK7 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00170 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.4e-72
Identity = 175/403 (43.42%), Postives = 185/403 (45.91%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSSHASSPE+H  E LLGS+RPFLRGELEKVN +LPSLIS+LRSVGAGECWHKHGTF
Sbjct: 1   MPSSSSHASSPETHRLEPLLGSIRPFLRGELEKVNPDLPSLISVLRSVGAGECWHKHGTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 61  LDHLVDIYRILKIWKAQEPVCLCGLFHSAYSNSYVNLAIFNPSTGRDVVRGHVGEAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCIVPRQSLIHDDLLFHYSDSELVDHLKFSNTSLKNALENGHLNEDETWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PANGVTVKHIKTGEDVTVSRRVVAIFLMMTVADFSDQLFGFQDSLFENTNGRLEFPGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. ExPASy TrEMBL
Match: A0A1S3CNN3 (uncharacterized protein LOC103502980 OS=Cucumis melo OX=3656 GN=LOC103502980 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.4e-72
Identity = 174/403 (43.18%), Postives = 185/403 (45.91%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSSHASSPE+H  E LLGS+RPFLRGELEKVN +LPSLIS+LRSVGAGECWHKHGTF
Sbjct: 1   MPSSSSHASSPETHRLEPLLGSIRPFLRGELEKVNPDLPSLISVLRSVGAGECWHKHGTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 61  LDHLVDIYRILKIWKAQEPVCLCGLFHSAYSNSYVNLAIFNPSTGRDVVRGHVGEAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCIVPRQSLIHDDLLFHYSDSELVDHLKFSNTSLKNALENGHLNEDETWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PANGVTVKHIKTGEDVTVSRRVVAIFLMMTIADFSDQLFGFQDSLFENTNGRLEFPGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. ExPASy TrEMBL
Match: A0A6J1JR05 (uncharacterized protein LOC111487552 OS=Cucurbita maxima OX=3661 GN=LOC111487552 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.3e-67
Identity = 168/403 (41.69%), Postives = 180/403 (44.67%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSS++SSPE+   +ALL S+RPFLRGELEKVN NLPSLIS+LRSVGAGECWHKHGTF
Sbjct: 1   MPSSSSNSSSPENSHLDALLCSVRPFLRGELEKVNTNLPSLISILRSVGAGECWHKHGTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 61  LDHLVDIYRILKIWKAQEPVCLCGLFHSAYSNSYVNLAIFDPSTGRDIVRGHVGEAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCIVPRQHLIHDDLLFRYSDSELVEHLKVSEASLKNAVENGHFNDDETWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PADGITVKHIKTGEDVMVSRRVVAIFLMMTIADFSDQLFGFQDLLFENSNGRLEFTGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. ExPASy TrEMBL
Match: A0A6J1H1F4 (uncharacterized protein LOC111458696 OS=Cucurbita moschata OX=3662 GN=LOC111458696 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 7.3e-67
Identity = 167/403 (41.44%), Postives = 180/403 (44.67%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSS++S PE++  +ALL S+RPFLRGELEKVN NLPSLIS+LRSVGAGECWHKHGTF
Sbjct: 1   MPSSSSNSSWPENNHLDALLCSVRPFLRGELEKVNTNLPSLISVLRSVGAGECWHKHGTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 61  LDHLVDIYRILKIWKAQEPVCLCGLFHSAYSNSYVNLAIFDPSTGRDIVRGHVGEAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCIVPRQHLIHDDLLFRYSDSELVDHLKVSEASLKNAVENGHFNDDETWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PADGITVKHIKTGEDVMVSRRVVAIFLMMTIADFSDQLFGFQDLLFENSNGRLEFTGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. ExPASy TrEMBL
Match: A0A6J1CK02 (uncharacterized protein LOC111011992 OS=Momordica charantia OX=3673 GN=LOC111011992 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.8e-64
Identity = 161/403 (39.95%), Postives = 177/403 (43.92%), Query Frame = 0


Query: 1   MSSSSSHASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTF 60
           M SSSS  S PE+  F+ALL S+RPFLRGELEKVN +LPSLIS+LRSVGAGECWHKHGTF
Sbjct: 1   MPSSSSDQSLPENLHFQALLDSVRPFLRGELEKVNTDLPSLISVLRSVGAGECWHKHGTF 60

Query: 61  LDHLVDTYR--------------------------------------------------- 120
           LDHLVD YR                                                   
Sbjct: 61  LDHLVDIYRILKIWKAPEPVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRSHVGDAAERL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 IHLFCIVPRQPLIHDDLLFHYSDSELVEHLKVSEASLKDAVENGRFNDEEAWRKKLQSIL 180

Query: 181 ---------------------------------------------------------NNY 199
                                                                    NNY
Sbjct: 181 PADGVTVKHIKTGEDVAVSRRVVAIFLTMTMADFSDQLFGFQDSLFDNSNGRLEFTGNNY 240

[Close]

BLAST of CcUC01G008450.1 vs. TAIR 10
Match: AT3G19990.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). )

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-46
Identity = 128/404 (31.68%), Postives = 157/404 (38.86%), Query Frame = 0


Query: 8   ASSPESHCFEALLGSLRPFLRGELEKVNMNLPSLISLLRSVGAGECWHKHGTFLDHLVDT 67
           +SSP  +  +A+L S RPFLRGELEK++  LPSLI++L+SVGAGECWHKHG+FLDHL+D 
Sbjct: 4   SSSPSPN--DAVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDI 63

Query: 68  YR---------------------------------------------------------- 127
           Y+                                                          
Sbjct: 64  YKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVV 123

Query: 128 ------------------------------------------------------------ 187
                                                                       
Sbjct: 124 PRQTLIHDELLFKYSDCELVEHLDCSEVSLRNAKEKGIFDGDEEWRKKINALVPENGVVV 183

Query: 188 --------------------------------------------------NNYKSLWPGN 199
                                                             NN  +LWPGN
Sbjct: 184 KHIKTGEEIVVSRRVVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGN 243

The following BLAST results are available for this feature:

BLAST of CcUC01G008450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875815.1	8.9e-75	45.41	uncharacterized protein LOC120068183 [Benincasa hispida]	[more]
KAA0066113.1	7.0e-72	43.42	Tetratricopeptide-like helical [Cucumis melo var. makuwa] >TYK15152.1 Tetratrico...	[more]
XP_004150197.1	9.2e-72	43.42	uncharacterized protein LOC101221411 [Cucumis sativus]	[more]
XP_008465339.1	9.2e-72	43.18	PREDICTED: uncharacterized protein LOC103502980 [Cucumis melo]	[more]
KAE8648381.1	9.2e-72	43.42	hypothetical protein Csa_023296 [Cucumis sativus]	[more]

BLAST of CcUC01G008450.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC01G008450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CUK7	3.4e-72	43.42	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CNN3	4.4e-72	43.18	uncharacterized protein LOC103502980 OS=Cucumis melo OX=3656 GN=LOC103502980 PE=...	[more]
A0A6J1JR05	3.3e-67	41.69	uncharacterized protein LOC111487552 OS=Cucurbita maxima OX=3661 GN=LOC111487552...	[more]
A0A6J1H1F4	7.3e-67	41.44	uncharacterized protein LOC111458696 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A6J1CK02	5.8e-64	39.95	uncharacterized protein LOC111011992 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of CcUC01G008450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19990.1	1.1e-46	31.68	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37391	E3 UBIQUITIN-PROTEIN LIGASE	coord: 70..155 coord: 155..198 coord: 9..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC01G008450	CcUC01G008450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G008450.1-exon	CcUC01G008450.1-exon-CicolChr01:9015218..9015422	exon
CcUC01G008450.1-exon	CcUC01G008450.1-exon-CicolChr01:9015901..9016161	exon
CcUC01G008450.1-exon	CcUC01G008450.1-exon-CicolChr01:9016273..9016406	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC01G008450.1-cds	CcUC01G008450.1-cds-CicolChr01:9015218..9015422	CDS
CcUC01G008450.1-cds	CcUC01G008450.1-cds-CicolChr01:9015901..9016161	CDS
CcUC01G008450.1-cds	CcUC01G008450.1-cds-CicolChr01:9016273..9016406	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC01G008450.1	CcUC01G008450.1-protein	polypeptide