![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CcUC01G007240.1 (mRNA) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGTTGAAGTAAACCAAGAATAAAACTTCAATTCTCTCATTCGCTTCCTATCTTTGAAGGTAGACTGTGTTACATTCACTCGGAGGCAACTAAAAAAAATCAATGACAAGCTTATAATGAAAAAAAATACAATATAATATAAAGTCATTAATTAGAATCTCCTAATCATAACCAATTTATCTAAACTTTTAACCTCAAAACTTAGAATTAAAATCTCATTTTCATTCTTATTTACTTATTTAAAATTTTATAGTTAAAAAAATTAATACCTAAATTAAAATTTTTAAAAAAATTGAAAATTTTAAGAAATAAAATAGTATCGATTTAATTATATAATATTATTTAACTTTTATAAAATGATATGTTTTTGTAATAAATTGAACCAAAAAAAAAAAAAAAATCACATATAAAATGACAAAAGAATCAGAAAATGCTAATCCGTGGGCTCATTACTTCTTGGTTACGTGGCCATTTGGATTGAGTGTGCAGTAAACAAGATCCTCGGAAACGGTGGGCTTTAGGGTGGCTCATAACAACTATTATTTCCTCTTCCTCTTCTATTATTTTTTTTTTCTTTACTTTTAAATAAATTTTCTTTTTAAAAGAAAATTGGTGCAGAAACCACCACATCATTACATGTTGAACAAGAATGAAAAGGAAAAAAAAAAAACTATTTTATTTTTCAATTTCAAAAATCATTACATAAATGTAGTCAAATCAAGGCAGGTATAGTGACACATTAGCTACAATATAACTTCAAATTCAATCTAAACATTTGAAAGTAAATTAAGGATAATAATGAAAGAAACTTATTTTCTTGTACTTAGTACTTCAAAGTTTAAGCTCTTGATTTAATACCATCTAAAGTTTAATGGTATGATCTTCTTATTTGGCAACTACTGTAATTGAAGGACTATCCAAATTAGCAGCAAGCTTGATTTTCCTAGCCTTTGTTATATTCCTCCAATAAGTTGCTATTTCCCTCCCTGTTTCATCTGCCGTCTTCTTCCCACTTGTTTCCTTCTTACCATTTTCTAAGCTCCCCATTTTTGCACCATTCTTTGATGGAAGAGTATCTAACTCAGCCAAAACCTTTACGATATCAAGCACAAGCCGCTCCGCAAGCGTGCGAGAGAAATCTTCTCTTATCACCACACGAAGAACTGATACGTGTTTCGCCCCTTCCGGCATTGGATACGCCGGCACGATCCACCCAAACCGCCGCAACATCTCTGATACCTCAAACTCGTCGTGTCGGCTTCGGTCTTTGAGGGAGAACGCCACCACCGGCACTCCCATGTCCTTTGAAACTATGGTGAACCTCCCTGTGTTTTCAAGCCCTTCCTTCAGCACCATTGCATTGTCGTGACAATTCTGCATCACATTCCGATATCCCTCGAAACCCAATCGGATTAGTTGGTAATACTGCGCAATGATTTGGCTTGACCCTGCAAGTTAACAAGTAGGATGTCACCCTAATTTCATCTCAATAACACATGTGTTTTTGTTAATTAGGAATTAATTATACCTTTGGAGAAGTTGAGAGTGAAGGTGGGTTGGTCGGCTCCAAGGTAATTGATATGGAAAATGAGTTCTTGGGGCAGATCTTGTTTGGTTCTCCAAATCACCCAACCAATTCCAGCGTAGACAAGCCCATACTTATGGCCGCTCACATTGATGCTCTTCACCAGAGGAAGCCTGAAGTCCCATTCAAGCTCTGGATACAGAAACGGCGCTATGAACCCACCGCTGGCCGCATCCACGTGAATGGGAGTATCCCATCCAGTTTCCTTATTCTTCTCCACCAACAAACCATTCAACAGCTTCACATCTTCGAATTCACCATTGTAAGTTGACCCCAAAATGGCTGCAACGCAGATGGTATTCTCATCCACCATCTCAACGGCTTGAACAGGGTCCATCACGTAATACCCTTCTCTCACTTTAACTTCCTTCAGCTCAACTTCAAAGTATCTCGCAAATTTCTCCCAACAAACTTGCACATTGGCACCCGTCACAATATTGGGCTTCTCATAAGCCTTCCCCTCTGCTTTCCGCCTGTTCTGCCACTTCCTCTTGAAGGCAAGCCCCGCCAGCATGATGGCCTCCGACGACCCCACCGTCCCAACTCCGACGGCGGTGTCGGAGTCTCCCAAGGGGGCGTTGAAGAGATGGGCAATCATGTTGACGCAGCGGTTCTGAAGCTCGGTGGTGACAGGGTACTCGTCCATGTCCACGTAGTTCTTGTTGACAGAGTCCATGATGAGCTTGTCGCATTCCGGCTCCATCCAAGTAGTGACGAAGGAGGCTAGATTCAGCCTTGGGTTGCCGTCGAGCATGAGCTCGTCGTTGATGATTTGGAAGGCGGCCTCCTTGGGCATGGAGTTGTCGGGCATGGTGAACCTTGGAGCAGAGTCCCGAACGTAG ATGAAAGTATCTAACTCAGCCAAAACCTTTACGATATCAAGCACAAGCCGCTCCGCAAGCGTGCGAGAGAAATCTTCTCTTATCACCACACGAAGAACTGATACGTGTTTCGCCCCTTCCGGCATTGGATACGCCGGCACGATCCACCCAAACCGCCGCAACATCTCTGATACCTCAAACTCGTCGTGTCGGCTTCGGTCTTTGAGGGAGAACGCCACCACCGGCACTCCCATGTCCTTTGAAACTATGATCTTGTTTGGTTCTCCAAATCACCCAACCAATTCCAGCGTAGACAAGCCCATACTTATGGCCGCTCACATTGATGCTCTTCACCAGAGGAAGCCTGAAGTCCCATTCAAGCTCTGGATACAGAAACGGCGCTATGAACCCACCGCTGGCCGCATCCACCTCAACTTCAAAGTATCTCGCAAATTTCTCCCAACAAACTTGCACATTGGCACCCGTCACAATATTGGGCTTCTCATAAGCCTTCCCCTCTGCTTTCCGCCTGTTCTGCCACTTCCTCTTGAAGGCAAGCCCCGCCAGCATGATGGCCTCCGACGACCCCACCGTCCCAACTCCGACGGCGGTGTCGGAGTCTCCCAAGGGGGCGTTGAAGAGATGGGCAATCATGTTGACGCAGCGGTTCTGAAGCTCGGTGAGTCCATGATGAGCTTGTCGCATTCCGGCTCCATCCAAGTAGTGACGAAGGAGGCTAGATTCAGCCTTGGGTTGCCGTCGAGCATGAGCTCGTCGTTGATGATTTGGAAGGCGGCCTCCTTGGGCATGGAGTTGTCGGGCATGGTGAACCTTGGAGCAGAGTCCCGAACGTAG ATGAAAGTATCTAACTCAGCCAAAACCTTTACGATATCAAGCACAAGCCGCTCCGCAAGCGTGCGAGAGAAATCTTCTCTTATCACCACACGAAGAACTGATACGTGTTTCGCCCCTTCCGGCATTGGATACGCCGGCACGATCCACCCAAACCGCCGCAACATCTCTGATACCTCAAACTCGTCGTGTCGGCTTCGGTCTTTGAGGGAGAACGCCACCACCGGCACTCCCATGTCCTTTGAAACTATGATCTTGTTTGGTTCTCCAAATCACCCAACCAATTCCAGCGTAGACAAGCCCATACTTATGGCCGCTCACATTGATGCTCTTCACCAGAGGAAGCCTGAAGTCCCATTCAAGCTCTGGATACAGAAACGGCGCTATGAACCCACCGCTGGCCGCATCCACCTCAACTTCAAAGTATCTCGCAAATTTCTCCCAACAAACTTGCACATTGGCACCCGTCACAATATTGGGCTTCTCATAAGCCTTCCCCTCTGCTTTCCGCCTGTTCTGCCACTTCCTCTTGAAGGCAAGCCCCGCCAGCATGATGGCCTCCGACGACCCCACCGTCCCAACTCCGACGGCGGTGTCGGAGTCTCCCAAGGGGGCGTTGAAGAGATGGGCAATCATGTTGACGCAGCGGTTCTGAAGCTCGGTGAGTCCATGATGAGCTTGTCGCATTCCGGCTCCATCCAAGTAGTGACGAAGGAGGCTAGATTCAGCCTTGGGTTGCCGTCGAGCATGAGCTCGTCGTTGATGATTTGGAAGGCGGCCTCCTTGGGCATGGAGTTGTCGGGCATGGTGAACCTTGGAGCAGAGTCCCGAACGTAG MKVSNSAKTFTISSTSRSASVREKSSLITTRRTDTCFAPSGIGYAGTIHPNRRNISDTSNSSCRLRSLRENATTGTPMSFETMILFGSPNHPTNSSVDKPILMAAHIDALHQRKPEVPFKLWIQKRRYEPTAGRIHLNFKVSRKFLPTNLHIGTRHNIGLLISLPLCFPPVLPLPLEGKPRQHDGLRRPHRPNSDGGVGVSQGGVEEMGNHVDAAVLKLGESMMSLSHSGSIQVVTKEARFSLGLPSSMSSSLMIWKAASLGMELSGMVNLGAESRT Homology
BLAST of CcUC01G007240.1 vs. NCBI nr
Match: MCI60952.1 (hypothetical protein [Trifolium medium]) HSP 1 Score: 82.4 bits (202), Expect = 6.7e-12 Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 0
BLAST of CcUC01G007240.1 vs. NCBI nr
Match: TXG57022.1 (hypothetical protein EZV62_018335 [Acer yangbiense]) HSP 1 Score: 63.9 bits (154), Expect = 2.5e-06 Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0
BLAST of CcUC01G007240.1 vs. NCBI nr
Match: KAF4380495.1 (hypothetical protein G4B88_011741 [Cannabis sativa]) HSP 1 Score: 62.4 bits (150), Expect = 7.1e-06 Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0
BLAST of CcUC01G007240.1 vs. ExPASy TrEMBL
Match: A0A392TJ15 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 3.2e-12 Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 0
BLAST of CcUC01G007240.1 vs. ExPASy TrEMBL
Match: A0A803Q738 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07 Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0
BLAST of CcUC01G007240.1 vs. ExPASy TrEMBL
Match: A0A5C7HL19 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018335 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06 Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0
BLAST of CcUC01G007240.1 vs. ExPASy TrEMBL
Match: A0A7J6GC03 (DUF629 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_011741 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06 Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|