CcUC01G007240 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G007240
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDUF629 domain-containing protein
LocationCicolChr01: 7881035 .. 7883464 (+)
RNA-Seq ExpressionCcUC01G007240
SyntenyCcUC01G007240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGAAGTAAACCAAGAATAAAACTTCAATTCTCTCATTCGCTTCCTATCTTTGAAGGTAGACTGTGTTACATTCACTCGGAGGCAACTAAAAAAAATCAATGACAAGCTTATAATGAAAAAAAATACAATATAATATAAAGTCATTAATTAGAATCTCCTAATCATAACCAATTTATCTAAACTTTTAACCTCAAAACTTAGAATTAAAATCTCATTTTCATTCTTATTTACTTATTTAAAATTTTATAGTTAAAAAAATTAATACCTAAATTAAAATTTTTAAAAAAATTGAAAATTTTAAGAAATAAAATAGTATCGATTTAATTATATAATATTATTTAACTTTTATAAAATGATATGTTTTTGTAATAAATTGAACCAAAAAAAAAAAAAAAATCACATATAAAATGACAAAAGAATCAGAAAATGCTAATCCGTGGGCTCATTACTTCTTGGTTACGTGGCCATTTGGATTGAGTGTGCAGTAAACAAGATCCTCGGAAACGGTGGGCTTTAGGGTGGCTCATAACAACTATTATTTCCTCTTCCTCTTCTATTATTTTTTTTTTCTTTACTTTTAAATAAATTTTCTTTTTAAAAGAAAATTGGTGCAGAAACCACCACATCATTACATGTTGAACAAGAATGAAAAGGAAAAAAAAAAAACTATTTTATTTTTCAATTTCAAAAATCATTACATAAATGTAGTCAAATCAAGGCAGGTATAGTGACACATTAGCTACAATATAACTTCAAATTCAATCTAAACATTTGAAAGTAAATTAAGGATAATAATGAAAGAAACTTATTTTCTTGTACTTAGTACTTCAAAGTTTAAGCTCTTGATTTAATACCATCTAAAGTTTAATGGTATGATCTTCTTATTTGGCAACTACTGTAATTGAAGGACTATCCAAATTAGCAGCAAGCTTGATTTTCCTAGCCTTTGTTATATTCCTCCAATAAGTTGCTATTTCCCTCCCTGTTTCATCTGCCGTCTTCTTCCCACTTGTTTCCTTCTTACCATTTTCTAAGCTCCCCATTTTTGCACCATTCTTTGATGGAAGAGTATCTAACTCAGCCAAAACCTTTACGATATCAAGCACAAGCCGCTCCGCAAGCGTGCGAGAGAAATCTTCTCTTATCACCACACGAAGAACTGATACGTGTTTCGCCCCTTCCGGCATTGGATACGCCGGCACGATCCACCCAAACCGCCGCAACATCTCTGATACCTCAAACTCGTCGTGTCGGCTTCGGTCTTTGAGGGAGAACGCCACCACCGGCACTCCCATGTCCTTTGAAACTATGGTGAACCTCCCTGTGTTTTCAAGCCCTTCCTTCAGCACCATTGCATTGTCGTGACAATTCTGCATCACATTCCGATATCCCTCGAAACCCAATCGGATTAGTTGGTAATACTGCGCAATGATTTGGCTTGACCCTGCAAGTTAACAAGTAGGATGTCACCCTAATTTCATCTCAATAACACATGTGTTTTTGTTAATTAGGAATTAATTATACCTTTGGAGAAGTTGAGAGTGAAGGTGGGTTGGTCGGCTCCAAGGTAATTGATATGGAAAATGAGTTCTTGGGGCAGATCTTGTTTGGTTCTCCAAATCACCCAACCAATTCCAGCGTAGACAAGCCCATACTTATGGCCGCTCACATTGATGCTCTTCACCAGAGGAAGCCTGAAGTCCCATTCAAGCTCTGGATACAGAAACGGCGCTATGAACCCACCGCTGGCCGCATCCACGTGAATGGGAGTATCCCATCCAGTTTCCTTATTCTTCTCCACCAACAAACCATTCAACAGCTTCACATCTTCGAATTCACCATTGTAAGTTGACCCCAAAATGGCTGCAACGCAGATGGTATTCTCATCCACCATCTCAACGGCTTGAACAGGGTCCATCACGTAATACCCTTCTCTCACTTTAACTTCCTTCAGCTCAACTTCAAAGTATCTCGCAAATTTCTCCCAACAAACTTGCACATTGGCACCCGTCACAATATTGGGCTTCTCATAAGCCTTCCCCTCTGCTTTCCGCCTGTTCTGCCACTTCCTCTTGAAGGCAAGCCCCGCCAGCATGATGGCCTCCGACGACCCCACCGTCCCAACTCCGACGGCGGTGTCGGAGTCTCCCAAGGGGGCGTTGAAGAGATGGGCAATCATGTTGACGCAGCGGTTCTGAAGCTCGGTGGTGACAGGGTACTCGTCCATGTCCACGTAGTTCTTGTTGACAGAGTCCATGATGAGCTTGTCGCATTCCGGCTCCATCCAAGTAGTGACGAAGGAGGCTAGATTCAGCCTTGGGTTGCCGTCGAGCATGAGCTCGTCGTTGATGATTTGGAAGGCGGCCTCCTTGGGCATGGAGTTGTCGGGCATGGTGAACCTTGGAGCAGAGTCCCGAACGTAG

mRNA sequence

ATGAAAGTATCTAACTCAGCCAAAACCTTTACGATATCAAGCACAAGCCGCTCCGCAAGCGTGCGAGAGAAATCTTCTCTTATCACCACACGAAGAACTGATACGTGTTTCGCCCCTTCCGGCATTGGATACGCCGGCACGATCCACCCAAACCGCCGCAACATCTCTGATACCTCAAACTCGTCGTGTCGGCTTCGGTCTTTGAGGGAGAACGCCACCACCGGCACTCCCATGTCCTTTGAAACTATGATCTTGTTTGGTTCTCCAAATCACCCAACCAATTCCAGCGTAGACAAGCCCATACTTATGGCCGCTCACATTGATGCTCTTCACCAGAGGAAGCCTGAAGTCCCATTCAAGCTCTGGATACAGAAACGGCGCTATGAACCCACCGCTGGCCGCATCCACCTCAACTTCAAAGTATCTCGCAAATTTCTCCCAACAAACTTGCACATTGGCACCCGTCACAATATTGGGCTTCTCATAAGCCTTCCCCTCTGCTTTCCGCCTGTTCTGCCACTTCCTCTTGAAGGCAAGCCCCGCCAGCATGATGGCCTCCGACGACCCCACCGTCCCAACTCCGACGGCGGTGTCGGAGTCTCCCAAGGGGGCGTTGAAGAGATGGGCAATCATGTTGACGCAGCGGTTCTGAAGCTCGGTGAGTCCATGATGAGCTTGTCGCATTCCGGCTCCATCCAAGTAGTGACGAAGGAGGCTAGATTCAGCCTTGGGTTGCCGTCGAGCATGAGCTCGTCGTTGATGATTTGGAAGGCGGCCTCCTTGGGCATGGAGTTGTCGGGCATGGTGAACCTTGGAGCAGAGTCCCGAACGTAG

Coding sequence (CDS)

ATGAAAGTATCTAACTCAGCCAAAACCTTTACGATATCAAGCACAAGCCGCTCCGCAAGCGTGCGAGAGAAATCTTCTCTTATCACCACACGAAGAACTGATACGTGTTTCGCCCCTTCCGGCATTGGATACGCCGGCACGATCCACCCAAACCGCCGCAACATCTCTGATACCTCAAACTCGTCGTGTCGGCTTCGGTCTTTGAGGGAGAACGCCACCACCGGCACTCCCATGTCCTTTGAAACTATGATCTTGTTTGGTTCTCCAAATCACCCAACCAATTCCAGCGTAGACAAGCCCATACTTATGGCCGCTCACATTGATGCTCTTCACCAGAGGAAGCCTGAAGTCCCATTCAAGCTCTGGATACAGAAACGGCGCTATGAACCCACCGCTGGCCGCATCCACCTCAACTTCAAAGTATCTCGCAAATTTCTCCCAACAAACTTGCACATTGGCACCCGTCACAATATTGGGCTTCTCATAAGCCTTCCCCTCTGCTTTCCGCCTGTTCTGCCACTTCCTCTTGAAGGCAAGCCCCGCCAGCATGATGGCCTCCGACGACCCCACCGTCCCAACTCCGACGGCGGTGTCGGAGTCTCCCAAGGGGGCGTTGAAGAGATGGGCAATCATGTTGACGCAGCGGTTCTGAAGCTCGGTGAGTCCATGATGAGCTTGTCGCATTCCGGCTCCATCCAAGTAGTGACGAAGGAGGCTAGATTCAGCCTTGGGTTGCCGTCGAGCATGAGCTCGTCGTTGATGATTTGGAAGGCGGCCTCCTTGGGCATGGAGTTGTCGGGCATGGTGAACCTTGGAGCAGAGTCCCGAACGTAG

Protein sequence

MKVSNSAKTFTISSTSRSASVREKSSLITTRRTDTCFAPSGIGYAGTIHPNRRNISDTSNSSCRLRSLRENATTGTPMSFETMILFGSPNHPTNSSVDKPILMAAHIDALHQRKPEVPFKLWIQKRRYEPTAGRIHLNFKVSRKFLPTNLHIGTRHNIGLLISLPLCFPPVLPLPLEGKPRQHDGLRRPHRPNSDGGVGVSQGGVEEMGNHVDAAVLKLGESMMSLSHSGSIQVVTKEARFSLGLPSSMSSSLMIWKAASLGMELSGMVNLGAESRT
Homology
[Close]
BLAST of CcUC01G007240 vs. NCBI nr
Match: MCI60952.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 82.4 bits (202), Expect = 6.7e-12
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 0 

Query: 12 ISSTSRSASVREKSSLITTRRTDTCFAPSGIGYAGTIHPNRRNISDTSNSSCRLRSLREN 71
          +SS  RSASVRE S+L+TTR T  C AP GIGYAGT  P RRNI D  NSS    S REN
Sbjct: 1  MSSARRSASVRENSALMTTRSTLMCSAPGGIGYAGTTQPWRRNIFDILNSSYWFLSFREN 60

Query: 72 ATTGTPMSFE 82
          ATTGTP+SFE
Sbjct: 61 ATTGTPLSFE 70

[Close]
BLAST of CcUC01G007240 vs. NCBI nr
Match: TXG57022.1 (hypothetical protein EZV62_018335 [Acer yangbiense])

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-06
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 24  KSSLITTRRTDTCFAPSGIGYAGTIHPNRRNISDTSNSSCRLRSLRENAT 74
           K SL+TTR T TC+A + I YAGTIHP RR+IS TSN S RL SLRENAT
Sbjct: 76  KVSLMTTRNTVTCWASASIVYAGTIHPKRRSISATSNLSWRLLSLRENAT 125

[Close]
BLAST of CcUC01G007240 vs. NCBI nr
Match: KAF4380495.1 (hypothetical protein G4B88_011741 [Cannabis sativa])

HSP 1 Score: 62.4 bits (150), Expect = 7.1e-06
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 223 MMSLSHSGSIQVVTKEARFSLGLPSSMSSSLMIWKAASLGMELS------GMVNLGAESR 278
           MMSLSHS SIQVVTKEA+ SLG+PS+MSSS M W AASLG+  S      G+ ++  E++
Sbjct: 1   MMSLSHSSSIQVVTKEAKLSLGVPSNMSSSFMNWSAASLGIVFSQASSIWGLAHVRIETQ 60

[Close]
BLAST of CcUC01G007240 vs. ExPASy TrEMBL
Match: A0A392TJ15 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-12
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 0 

Query: 12 ISSTSRSASVREKSSLITTRRTDTCFAPSGIGYAGTIHPNRRNISDTSNSSCRLRSLREN 71
          +SS  RSASVRE S+L+TTR T  C AP GIGYAGT  P RRNI D  NSS    S REN
Sbjct: 1  MSSARRSASVRENSALMTTRSTLMCSAPGGIGYAGTTQPWRRNIFDILNSSYWFLSFREN 60

Query: 72 ATTGTPMSFE 82
          ATTGTP+SFE
Sbjct: 61 ATTGTPLSFE 70

[Close]
BLAST of CcUC01G007240 vs. ExPASy TrEMBL
Match: A0A803Q738 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 221 ESMMSLSHSGSIQVVTKEARFSLGLPSSMSSSLMIWKAASLGMELS------GMVNLGAE 278
           E+MMSLSHSGSIQVVTKEA+ SLG+PS+MSSS M W AASLG+  S      G+ ++  E
Sbjct: 2   EAMMSLSHSGSIQVVTKEAKLSLGVPSNMSSSFMNWSAASLGIVFSQASSIWGLAHVRIE 61

[Close]
BLAST of CcUC01G007240 vs. ExPASy TrEMBL
Match: A0A5C7HL19 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018335 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 24  KSSLITTRRTDTCFAPSGIGYAGTIHPNRRNISDTSNSSCRLRSLRENAT 74
           K SL+TTR T TC+A + I YAGTIHP RR+IS TSN S RL SLRENAT
Sbjct: 76  KVSLMTTRNTVTCWASASIVYAGTIHPKRRSISATSNLSWRLLSLRENAT 125

[Close]
BLAST of CcUC01G007240 vs. ExPASy TrEMBL
Match: A0A7J6GC03 (DUF629 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_011741 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 223 MMSLSHSGSIQVVTKEARFSLGLPSSMSSSLMIWKAASLGMELS------GMVNLGAESR 278
           MMSLSHS SIQVVTKEA+ SLG+PS+MSSS M W AASLG+  S      G+ ++  E++
Sbjct: 1   MMSLSHSSSIQVVTKEAKLSLGVPSNMSSSFMNWSAASLGIVFSQASSIWGLAHVRIETQ 60

The following BLAST results are available for this feature:
BLAST of CcUC01G007240 vs. NCBI nr
Match NameE-valueIdentityDescription
MCI60952.16.7e-1267.14hypothetical protein [Trifolium medium][more]
TXG57022.12.5e-0670.00hypothetical protein EZV62_018335 [Acer yangbiense][more]
KAF4380495.17.1e-0659.02hypothetical protein G4B88_011741 [Cannabis sativa][more]
BLAST of CcUC01G007240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC01G007240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A392TJ153.2e-1267.14Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1[more]
A0A803Q7381.4e-0760.32Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5C7HL191.2e-0670.00Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018335 PE=4 SV=1[more]
A0A7J6GC033.5e-0659.02DUF629 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_011741 PE=4... [more]
BLAST of CcUC01G007240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..205

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G007240.1CcUC01G007240.1mRNA