Carg25921-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25921-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 11092049 .. 11096318 (+)
Sequence length	219
RNA-Seq Expression	Carg25921-RA
Synteny	Carg25921-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCACCAGGCTTACCAAGCGGGCTCACACACCTCCTAGGCCTGTTGATCGGGCTAGCTCTTCTGGGCTGTAGCTGGGCACTTGGAGGGAATAGCGACCGTCATTGCACCATGCTAAGCATGATGGTCATTGCAGTCTCATAGTGTATGCATTCGTACTCGTCATAAAGGAAAGTATCCCAATGTACATGAACATACAATTATGCATGAGGTCCCCATTTTTTCCATCATAATAAACATAACTTTCATATCATAGAATGGGGTCGTACTTTGTAGCTTTTCTTCATTCCAAAACATTTCATAACATATCATGGTCTAACATAACACATCATATTACATCATGACATCTCATATATTATATAGCTTATCGTGAAATAATATAACATTTCATTAATACCATCATATTATTTGACATATTTTATAAGAATACGATCATCACATCACATTACAAAGCATGTCACACATATGACACATGCATGGCCACGGGCAGGTGATGCTCCCTAAACACATACATAAACACAATTCTTTCAACATAGTAGAACCACTTACGTGGTTGACCAAGAGCAAAGCTACTCCAACTACCTTCAAATAATTGACTAAGAATTTCATTTATGGACCAAAATTAGGTAAGGGATGGAATACCAGAGAGAGAGAGAGAAAGGGTGCCTAATAAAAAAGCTTTTTTTTTTTTTTTCTAACTGCTCGTAATAACTATATTCTTACTTTTATCAAGAGAATATCCCACGGTCGATTCCATGAGTGAATAATGGACCTAGATCCTAAAAACAACAAAGCTTTTGAATAAACATTAGTAATTTAAACTAGCATAAAGAGTAGTCTTTAAATGCTTTCGAAAAGTTAAACTAGTAGGAAAGGTTCCGAGCATATTAGACTTAAGCTGGATCGGCCAAAATACCAGCTTGGAGAAGTCAGAAAGTATACTCTCTTACCGGCTTCGAAATCCAAATGGAATGAAAGGAAGTAACGAACTCCTTTTATATTTTCTCAACCTAACCGAGGTGGACACCTCCATTTTCCTTTTCTTTTTTCTAATTTTAGATTATTACATGAAAAAGGAAAATGATTTAATAAAATATATTAATTTTTTTTTTGAAAAAATAGCCTTCAACATTTGAAAATTGGAGAAATAGCCCCCAAGGGAAATAGCTTCCGAAGTTGAAAATTTGAAAAATAACTCTAAATATATCAAAATTCTGAAAAACTAGCACTTCAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTATCGAGAGAAACCATAATAGGCCACCTCACACGACCTATGTACATCAAACAATTGGACAAGCTGGGAGATGATCGGCTTATTGAAAGCTAACTTAGCCGTGTAGAAGGCTTAGAAATAATTCTTTTCCTAGACCCTTGTTAACAGAAATAATTACAAAACTAATCACTATGCATGACTCTCGTGAGTGAGCTTGAGGAAAAAAAAAAAAAAAAAAAAATCAACAACTTATCTATCTAATCTCTCTCCGACTTATTATTGTTCATTCTCTCGTTATTTTCTATTTCTAGAAACGGGTGACACTCTGCATAATTTTATTTAATTAGTTTAAAATCAACACTCATATGAGTGATGCTCAAAAACTCACTTCCAGAAATAAACCAGAAAGATAGGTTATCGGTGGAATCGATAATTTACTTATTACTTGTTACAGTGATAGTGTATACTTGCACTTATTCTTATAAATTTTATATAATTTTATTATATACATCCACAAGCAATCAAAGCTATCTTTACATGGTAATGCAGATGATGGAGATGCTTTAGTTGCTGATTTAGTCGGCAATGATTAACCAACAAGGACAAGACGGGGGTCACAACACTAGCATGTCCCGGGACATCAAGATATTTGAAAGACTTCTATCAACATTTGACATACTATGCTGGTGCTCACTGTGCTACAAGCATGATAGATGCCTACATTCTTAGGGTATACAAGGAATTAAGAGGTCAAGAGAGCTCCTACAACAAGAGGAAGTTCCATAAGTCCTCTCAACTCATCCCACCATGACAGGGGATAGAGAAGCAGCGTAATCAAACATGATGCTCCCTATGAAGAGAAACCTATGTGCCTCACCTACCACCGCAGACATGATAAACCATATAGGGATGATATAGATGCATGCTTTGGATGTGGTAAGAGTGGCCATAAAGTAGCAGACTTCTCTCACAAGAAGCGACAAGACAACATTGAACATCAAGGTCGGGTTAGGACAACCAAGGATGTTCAAGTCAGGGACGGGAAATGGCTTGGGCAACTATGGAAAAGAGATTCAATACTAGTTTGAACATGTTTTCTCCGACGAGCTAATAGGACTATTGTCATTTAGGGAAATAGACTTTGGAATAGAACTCGAGCCAGAAACGACCCTTATCTTAAAAGCCCCTTATAGAATGGCCTCAATGGAACTGAAGGAGCTCAAAGAACAATTGCAAAAGTTATTAGACTGAGGGTTCATCAGACCAAGTGTATCGCCCTTGGGGCTCGGAGCCCCAGTGCTATTCTTTAAGAAGGATGATTCTCTTCATTGACTACAAAGAATTGAATAAAGTGATCATCAAGAACAAGTATCCACTACACCTAAATGACCTATTTCTATCAATTGCAGGTGCCTCAGTCTTCTCTAAGATTAACTTAAGGTCCGGTTATCACCAATCCAACTAAGGATTAAGGAGGAAGAAACTTCCCAAAAATGGATAAGGGATTTATGTGGTATACAACGTTGCCTCGAGCAAGGGGTTAGTTAGACTATGCCTTGACGCATAATGGAAAGGTAATAGCCTATGCTTCAAGGCAACTAAAAGAATACGAGCATAATTATTCAACTCATGACTTGAAATTAAATGTAGTGGTACACACATTTAAGATATAACAATATTATCTGTATGATGAGATGATGCAATTTTACACTGACCATAAGAGCCTAGAGCACCTATTTACCCAGAAAAAAAAACTTAATAGGAGGAAAATGTGGTGGTTGGACCACAACATTGAGATTCAATACCATCCATGCAAGACTAATGTCGTGGTAGATGCCCTTTGTAGGAAGACAATTGATTCATTTAACAAGGTAGAATTGCAAACTGATATAGAAAGAGTTTGAATCGAGCTTGTAGCACAAGGTGCCACTACATGACATTCTTAGCTAAGAGTTCAACGAGACTTGAGACAGTCAATCATTGATACTCAAAAAAGTGATCCCACCTAGATCGAGTTTGCCATCAAAATGAGGTAGACCAAGTTGAATGATTTTATATGCATGTCTAATGATGGTCTCTTATGGTATAGACGGTTGTATGTCCCTAATAAAAAAAGAACCAAAAGGGACATACTAACAGAGACACATAAATTTCCACACACATGCATCCAGGTAGCAAAAATTGTACTAATGCTTGAAGGCATGCTACAATATCCGAAAATGAATATAGATATAGCAGATTATATGAGTAAATGTCTCACCTGTTAATAGGTGAAGGCTCGAAGGAAGAAGCTCTCAAGCTTACTACAACTTTCAAACATACCGGAGTGAAAATCAGAAGATCTGGCTATGGATTTCATTTTTGGGCTACTTAAGACAAGGAAGAAATACATAGTCATATTGTGATTGTGGATGATTTTGGGTCTTATCTCTTTTTGTGGTTTGGCTACACGAGAGTACATAAGTCTATACACTGACATAAAAACAAGGTATTCACCTAGTGGGTCAACGTGCATGTGCATAAGCTATGTGAAGTACCATGCATCCGAACCCACCTCAATAATAGAATTTGGACAGATTTTCAAACATGAAACCATAGTTGCAACGCCCAATAGTGAGGCCACTTACTAAGTATTTTTCTTAAACTACTCATCCTATTTGTATTATTAACCATAGTTGTAACTTCATAGGATAAATTTTAAGATAAAGTATTTTAAGTAGTTTCTGATCCATACCATTTTAAGATAAGATGAAGTATTTTAAGTAGCTTCTCGTACATACCATTTTAAGATAAAAGTCCCACGTCGGCTGATTGAGGCTATGAATACTATTTCTATTGATACAAAAGTATTTTGTGGAAGCCTATTTTTAAACCATTATTACTTTCCTTTTACTAAACCCTACCTCACGGTCAGCCAGCCTCCACCGCCCATTACCAGTCACTGTACTCCGTCCCGCCGCCGCCGCCGCCTCCTCCTCCCCCTTACATTCTCTGGCCTCCTTAA

mRNA sequence

ATGGGCTCACCAGGCTTACCAAGCGGGCTCACACACCTCCTAGGCCTGTTGATCGGGCTAGCTCTTCTGGGCTGTAGCTGGGCACTTGGAGGGAATAGCGACCGTCATTGCACCATGCTAAGCATGATGCCAGCCTCCACCGCCCATTACCAGTCACTGTACTCCGTCCCGCCGCCGCCGCCGCCTCCTCCTCCCCCTTACATTCTCTGGCCTCCTTAA

Coding sequence (CDS)

ATGGGCTCACCAGGCTTACCAAGCGGGCTCACACACCTCCTAGGCCTGTTGATCGGGCTAGCTCTTCTGGGCTGTAGCTGGGCACTTGGAGGGAATAGCGACCGTCATTGCACCATGCTAAGCATGATGCCAGCCTCCACCGCCCATTACCAGTCACTGTACTCCGTCCCGCCGCCGCCGCCGCCTCCTCCTCCCCCTTACATTCTCTGGCCTCCTTAA

Protein sequence

MGSPGLPSGLTHLLGLLIGLALLGCSWALGGNSDRHCTMLSMMPASTAHYQSLYSVPPPPPPPPPPYILWPP

Homology

[Close]

BLAST of Carg25921-RA vs. NCBI nr
Match: KAG7032411.1 (hypothetical protein SDJN02_06456, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 7.5e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MGSPGLPSGLTHLLGLLIGLALLGCSWALGGNSDRHCTMLSMMPASTAHYQSLYSVPPPP 60
          MGSPGLPSGLTHLLGLLIGLALLGCSWALGGNSDRHCTMLSMMPASTAHYQSLYSVPPPP
Sbjct: 1  MGSPGLPSGLTHLLGLLIGLALLGCSWALGGNSDRHCTMLSMMPASTAHYQSLYSVPPPP 60

Query: 61 PPPPPPYILWPP 73
          PPPPPPYILWPP
Sbjct: 61 PPPPPPYILWPP 72

The following BLAST results are available for this feature:

BLAST of Carg25921-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032411.1	7.5e-32	100.00	hypothetical protein SDJN02_06456, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg25921-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25921-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25921-RA vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25921	Carg25921	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25921-RA:2	Carg25921-RA:2	exon
Carg25921-RA:1	Carg25921-RA:1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25921-RA:cds	Carg25921-RA:cds	CDS
Carg25921-RA:cds	Carg25921-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25921-RA	Carg25921-RA-protein	polypeptide