Carg25921 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25921
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 11092049 .. 11096318 (+)
RNA-Seq ExpressionCarg25921
SyntenyCarg25921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCACCAGGCTTACCAAGCGGGCTCACACACCTCCTAGGCCTGTTGATCGGGCTAGCTCTTCTGGGCTGTAGCTGGGCACTTGGAGGGAATAGCGACCGTCATTGCACCATGCTAAGCATGATGGTCATTGCAGTCTCATAGTGTATGCATTCGTACTCGTCATAAAGGAAAGTATCCCAATGTACATGAACATACAATTATGCATGAGGTCCCCATTTTTTCCATCATAATAAACATAACTTTCATATCATAGAATGGGGTCGTACTTTGTAGCTTTTCTTCATTCCAAAACATTTCATAACATATCATGGTCTAACATAACACATCATATTACATCATGACATCTCATATATTATATAGCTTATCGTGAAATAATATAACATTTCATTAATACCATCATATTATTTGACATATTTTATAAGAATACGATCATCACATCACATTACAAAGCATGTCACACATATGACACATGCATGGCCACGGGCAGGTGATGCTCCCTAAACACATACATAAACACAATTCTTTCAACATAGTAGAACCACTTACGTGGTTGACCAAGAGCAAAGCTACTCCAACTACCTTCAAATAATTGACTAAGAATTTCATTTATGGACCAAAATTAGGTAAGGGATGGAATACCAGAGAGAGAGAGAGAAAGGGTGCCTAATAAAAAAGCTTTTTTTTTTTTTTTCTAACTGCTCGTAATAACTATATTCTTACTTTTATCAAGAGAATATCCCACGGTCGATTCCATGAGTGAATAATGGACCTAGATCCTAAAAACAACAAAGCTTTTGAATAAACATTAGTAATTTAAACTAGCATAAAGAGTAGTCTTTAAATGCTTTCGAAAAGTTAAACTAGTAGGAAAGGTTCCGAGCATATTAGACTTAAGCTGGATCGGCCAAAATACCAGCTTGGAGAAGTCAGAAAGTATACTCTCTTACCGGCTTCGAAATCCAAATGGAATGAAAGGAAGTAACGAACTCCTTTTATATTTTCTCAACCTAACCGAGGTGGACACCTCCATTTTCCTTTTCTTTTTTCTAATTTTAGATTATTACATGAAAAAGGAAAATGATTTAATAAAATATATTAATTTTTTTTTTGAAAAAATAGCCTTCAACATTTGAAAATTGGAGAAATAGCCCCCAAGGGAAATAGCTTCCGAAGTTGAAAATTTGAAAAATAACTCTAAATATATCAAAATTCTGAAAAACTAGCACTTCAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTATCGAGAGAAACCATAATAGGCCACCTCACACGACCTATGTACATCAAACAATTGGACAAGCTGGGAGATGATCGGCTTATTGAAAGCTAACTTAGCCGTGTAGAAGGCTTAGAAATAATTCTTTTCCTAGACCCTTGTTAACAGAAATAATTACAAAACTAATCACTATGCATGACTCTCGTGAGTGAGCTTGAGGAAAAAAAAAAAAAAAAAAAAATCAACAACTTATCTATCTAATCTCTCTCCGACTTATTATTGTTCATTCTCTCGTTATTTTCTATTTCTAGAAACGGGTGACACTCTGCATAATTTTATTTAATTAGTTTAAAATCAACACTCATATGAGTGATGCTCAAAAACTCACTTCCAGAAATAAACCAGAAAGATAGGTTATCGGTGGAATCGATAATTTACTTATTACTTGTTACAGTGATAGTGTATACTTGCACTTATTCTTATAAATTTTATATAATTTTATTATATACATCCACAAGCAATCAAAGCTATCTTTACATGGTAATGCAGATGATGGAGATGCTTTAGTTGCTGATTTAGTCGGCAATGATTAACCAACAAGGACAAGACGGGGGTCACAACACTAGCATGTCCCGGGACATCAAGATATTTGAAAGACTTCTATCAACATTTGACATACTATGCTGGTGCTCACTGTGCTACAAGCATGATAGATGCCTACATTCTTAGGGTATACAAGGAATTAAGAGGTCAAGAGAGCTCCTACAACAAGAGGAAGTTCCATAAGTCCTCTCAACTCATCCCACCATGACAGGGGATAGAGAAGCAGCGTAATCAAACATGATGCTCCCTATGAAGAGAAACCTATGTGCCTCACCTACCACCGCAGACATGATAAACCATATAGGGATGATATAGATGCATGCTTTGGATGTGGTAAGAGTGGCCATAAAGTAGCAGACTTCTCTCACAAGAAGCGACAAGACAACATTGAACATCAAGGTCGGGTTAGGACAACCAAGGATGTTCAAGTCAGGGACGGGAAATGGCTTGGGCAACTATGGAAAAGAGATTCAATACTAGTTTGAACATGTTTTCTCCGACGAGCTAATAGGACTATTGTCATTTAGGGAAATAGACTTTGGAATAGAACTCGAGCCAGAAACGACCCTTATCTTAAAAGCCCCTTATAGAATGGCCTCAATGGAACTGAAGGAGCTCAAAGAACAATTGCAAAAGTTATTAGACTGAGGGTTCATCAGACCAAGTGTATCGCCCTTGGGGCTCGGAGCCCCAGTGCTATTCTTTAAGAAGGATGATTCTCTTCATTGACTACAAAGAATTGAATAAAGTGATCATCAAGAACAAGTATCCACTACACCTAAATGACCTATTTCTATCAATTGCAGGTGCCTCAGTCTTCTCTAAGATTAACTTAAGGTCCGGTTATCACCAATCCAACTAAGGATTAAGGAGGAAGAAACTTCCCAAAAATGGATAAGGGATTTATGTGGTATACAACGTTGCCTCGAGCAAGGGGTTAGTTAGACTATGCCTTGACGCATAATGGAAAGGTAATAGCCTATGCTTCAAGGCAACTAAAAGAATACGAGCATAATTATTCAACTCATGACTTGAAATTAAATGTAGTGGTACACACATTTAAGATATAACAATATTATCTGTATGATGAGATGATGCAATTTTACACTGACCATAAGAGCCTAGAGCACCTATTTACCCAGAAAAAAAAACTTAATAGGAGGAAAATGTGGTGGTTGGACCACAACATTGAGATTCAATACCATCCATGCAAGACTAATGTCGTGGTAGATGCCCTTTGTAGGAAGACAATTGATTCATTTAACAAGGTAGAATTGCAAACTGATATAGAAAGAGTTTGAATCGAGCTTGTAGCACAAGGTGCCACTACATGACATTCTTAGCTAAGAGTTCAACGAGACTTGAGACAGTCAATCATTGATACTCAAAAAAGTGATCCCACCTAGATCGAGTTTGCCATCAAAATGAGGTAGACCAAGTTGAATGATTTTATATGCATGTCTAATGATGGTCTCTTATGGTATAGACGGTTGTATGTCCCTAATAAAAAAAGAACCAAAAGGGACATACTAACAGAGACACATAAATTTCCACACACATGCATCCAGGTAGCAAAAATTGTACTAATGCTTGAAGGCATGCTACAATATCCGAAAATGAATATAGATATAGCAGATTATATGAGTAAATGTCTCACCTGTTAATAGGTGAAGGCTCGAAGGAAGAAGCTCTCAAGCTTACTACAACTTTCAAACATACCGGAGTGAAAATCAGAAGATCTGGCTATGGATTTCATTTTTGGGCTACTTAAGACAAGGAAGAAATACATAGTCATATTGTGATTGTGGATGATTTTGGGTCTTATCTCTTTTTGTGGTTTGGCTACACGAGAGTACATAAGTCTATACACTGACATAAAAACAAGGTATTCACCTAGTGGGTCAACGTGCATGTGCATAAGCTATGTGAAGTACCATGCATCCGAACCCACCTCAATAATAGAATTTGGACAGATTTTCAAACATGAAACCATAGTTGCAACGCCCAATAGTGAGGCCACTTACTAAGTATTTTTCTTAAACTACTCATCCTATTTGTATTATTAACCATAGTTGTAACTTCATAGGATAAATTTTAAGATAAAGTATTTTAAGTAGTTTCTGATCCATACCATTTTAAGATAAGATGAAGTATTTTAAGTAGCTTCTCGTACATACCATTTTAAGATAAAAGTCCCACGTCGGCTGATTGAGGCTATGAATACTATTTCTATTGATACAAAAGTATTTTGTGGAAGCCTATTTTTAAACCATTATTACTTTCCTTTTACTAAACCCTACCTCACGGTCAGCCAGCCTCCACCGCCCATTACCAGTCACTGTACTCCGTCCCGCCGCCGCCGCCGCCTCCTCCTCCCCCTTACATTCTCTGGCCTCCTTAA

mRNA sequence

ATGGGCTCACCAGGCTTACCAAGCGGGCTCACACACCTCCTAGGCCTGTTGATCGGGCTAGCTCTTCTGGGCTGTAGCTGGGCACTTGGAGGGAATAGCGACCGTCATTGCACCATGCTAAGCATGATGCCAGCCTCCACCGCCCATTACCAGTCACTGTACTCCGTCCCGCCGCCGCCGCCGCCTCCTCCTCCCCCTTACATTCTCTGGCCTCCTTAA

Coding sequence (CDS)

ATGGGCTCACCAGGCTTACCAAGCGGGCTCACACACCTCCTAGGCCTGTTGATCGGGCTAGCTCTTCTGGGCTGTAGCTGGGCACTTGGAGGGAATAGCGACCGTCATTGCACCATGCTAAGCATGATGCCAGCCTCCACCGCCCATTACCAGTCACTGTACTCCGTCCCGCCGCCGCCGCCGCCTCCTCCTCCCCCTTACATTCTCTGGCCTCCTTAA

Protein sequence

MGSPGLPSGLTHLLGLLIGLALLGCSWALGGNSDRHCTMLSMMPASTAHYQSLYSVPPPPPPPPPPYILWPP
Homology
[Close]
BLAST of Carg25921 vs. NCBI nr
Match: KAG7032411.1 (hypothetical protein SDJN02_06456, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 7.5e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MGSPGLPSGLTHLLGLLIGLALLGCSWALGGNSDRHCTMLSMMPASTAHYQSLYSVPPPP 60
          MGSPGLPSGLTHLLGLLIGLALLGCSWALGGNSDRHCTMLSMMPASTAHYQSLYSVPPPP
Sbjct: 1  MGSPGLPSGLTHLLGLLIGLALLGCSWALGGNSDRHCTMLSMMPASTAHYQSLYSVPPPP 60

Query: 61 PPPPPPYILWPP 73
          PPPPPPYILWPP
Sbjct: 61 PPPPPPYILWPP 72

The following BLAST results are available for this feature:
BLAST of Carg25921 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032411.17.5e-32100.00hypothetical protein SDJN02_06456, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25921 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25921 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25921 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25921-RACarg25921-RAmRNA