Carg25650-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25650-RA
TypemRNA
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 9620672 .. 9620939 (+)
Sequence length189
RNA-Seq ExpressionCarg25650-RA
SyntenyCarg25650-RA
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCCTCTGCCTCATTACCGACCAACAACCACCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGGTTCACATTGCTTTTACTTCTCCTACCTTCTGACTCTTCTCGCTGGAAGCTCGAAACAAGGTATTGATTTTTGCTGCAGATCTCTACGGCTCTGCTTCGCACTGTTGATCGATTGCTGTTGCCTGATGGTCTTGCTTGA

mRNA sequence

ATGGTAGCCTCTGCCTCATTACCGACCAACAACCACCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGATCTCTACGGCTCTGCTTCGCACTGTTGATCGATTGCTGTTGCCTGATGGTCTTGCTTGA

Coding sequence (CDS)

ATGGTAGCCTCTGCCTCATTACCGACCAACAACCACCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGATCTCTACGGCTCTGCTTCGCACTGTTGATCGATTGCTGTTGCCTGATGGTCTTGCTTGA

Protein sequence

MVASASLPTNNHRQISTSDHRTRSSTPLFFRFRTQKKDPFERLISTALLRTVDRLLLPDGLA
Homology
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BLAST of Carg25650-RA vs. NCBI nr
Match: KAG7029030.1 (hypothetical protein SDJN02_10213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MVASASLPTNNHRQISTSDHRTRSSTPLFFRFRTQKKDPFERLISTALLRTVDRLLLPDG 60
          MVASASLPTNNHRQISTSDHRTRSSTPLFFRFRTQKKDPFERLISTALLRTVDRLLLPDG
Sbjct: 1  MVASASLPTNNHRQISTSDHRTRSSTPLFFRFRTQKKDPFERLISTALLRTVDRLLLPDG 60

Query: 61 LA 63
          LA
Sbjct: 61 LA 62

The following BLAST results are available for this feature:
BLAST of Carg25650-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029030.12.9e-24100.00hypothetical protein SDJN02_10213, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25650-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25650-RA vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25650-RA vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg25650Carg25650gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg25650-RA:1Carg25650-RA:1exon
Carg25650-RA:2Carg25650-RA:2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg25650-RA:cdsCarg25650-RA:cdsCDS
Carg25650-RA:cdsCarg25650-RA:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg25650-RACarg25650-RA-proteinpolypeptide