Carg25650 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25650
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr06: 9620672 .. 9620939 (+)
RNA-Seq Expression	Carg25650
Synteny	Carg25650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCCTCTGCCTCATTACCGACCAACAACCACCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGGTTCACATTGCTTTTACTTCTCCTACCTTCTGACTCTTCTCGCTGGAAGCTCGAAACAAGGTATTGATTTTTGCTGCAGATCTCTACGGCTCTGCTTCGCACTGTTGATCGATTGCTGTTGCCTGATGGTCTTGCTTGA

mRNA sequence

ATGGTAGCCTCTGCCTCATTACCGACCAACAACCACCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGATCTCTACGGCTCTGCTTCGCACTGTTGATCGATTGCTGTTGCCTGATGGTCTTGCTTGA

Coding sequence (CDS)

ATGGTAGCCTCTGCCTCATTACCGACCAACAACCACCGGCAAATATCAACTTCCGATCACCGGACTCGTTCTTCTACTCCTCTGTTCTTCCGTTTTCGAACTCAAAAGAAAGATCCATTTGAACGGCTGATCTCTACGGCTCTGCTTCGCACTGTTGATCGATTGCTGTTGCCTGATGGTCTTGCTTGA

Protein sequence

MVASASLPTNNHRQISTSDHRTRSSTPLFFRFRTQKKDPFERLISTALLRTVDRLLLPDGLA

Homology

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BLAST of Carg25650 vs. NCBI nr
Match: KAG7029030.1 (hypothetical protein SDJN02_10213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MVASASLPTNNHRQISTSDHRTRSSTPLFFRFRTQKKDPFERLISTALLRTVDRLLLPDG 60
          MVASASLPTNNHRQISTSDHRTRSSTPLFFRFRTQKKDPFERLISTALLRTVDRLLLPDG
Sbjct: 1  MVASASLPTNNHRQISTSDHRTRSSTPLFFRFRTQKKDPFERLISTALLRTVDRLLLPDG 60

Query: 61 LA 63
          LA
Sbjct: 61 LA 62

The following BLAST results are available for this feature:

BLAST of Carg25650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029030.1	2.9e-24	100.00	hypothetical protein SDJN02_10213, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg25650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25650-RA	Carg25650-RA	mRNA