Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGTCGCAGTCATGCCGAAACCATGAGAGAGAGAAAATGGAGTGGCTCATGCCCTGAGGCTGAGGAGCGAGACGGCGATTTCGCAACTTTTCTTCGAGAAAGAGAGAGAGAGAGAGAGACAGTGATTCCGTACGACCATCCTCATCGTCCTCCTCCTGCATCCCTCTTCCGATCTTCCCATTTTCCACTTCTTCTCCGAACTTCAATCCTTCCCAATTTTCTCCTTTCATCATTCGCCATCGCTGTTCTTCGATTCGCCTTGCTGCACTGATTATCCAATTAAGACTTCCTCTTCGTCGTTTGATCACCTTTGGAGCCTCCTTCAATTGGGTCTCGAATTCTTTTCCCCCAGTGGAGTTTGAAGTTTCGACTTTTGGTAAGTGAAGAGATTTGCCTTGTTCAATTTGGAATTTTGGGTGTTGTTCTGCCGTTTCTCGTTTTTTTTTTTAGGGTTTTTGGTTTTGTTCGTTGTTTGTTTAGCTTCATGCATGTAGGGAATGGAATAGTGTGCTTGTATTTCTTGAATTCTTCATGTTCTATGTTTGGTTTGCTTGCGAATTGGACAATTGAAATGGGATTGTGAATTGTGGGAACGAAAATTTTGCGGTTTTTAAATTTGAAGTAAGTTGTTGGTTGTGTTCATGGGGATTCATCGAGGAGCGTTTGTGGCAAAGTCAGTCGACAGTGTTTTAAGGATTAGGTTTCTTGTTGTTTGAAGGCTTGGGGGATGGCTGGAAGATGGTGA mRNA sequence ATGAGTCGCAGTCATGCCGAAACCATGAGAGAGAGAAAATGGAGTGGCTCATGCCCTGAGGCTGAGGAGCGAGACGGCGATTTCGCAACTTTTCTTCGAGAAAGAGAGAGAGAGAGAGAGACAGTGATTCCGTACGACCATCCTCATCGTCCTCCTCCTGCATCCCTCTTCCGATCTTCCCATTTTCCACTTCTTCTCCGAACTTCAATCCTTCCCAATTTTCTCCTTTCATCATTCGCCATCGCTGCTTGGGGGATGGCTGGAAGATGGTGA Coding sequence (CDS) ATGAGTCGCAGTCATGCCGAAACCATGAGAGAGAGAAAATGGAGTGGCTCATGCCCTGAGGCTGAGGAGCGAGACGGCGATTTCGCAACTTTTCTTCGAGAAAGAGAGAGAGAGAGAGAGACAGTGATTCCGTACGACCATCCTCATCGTCCTCCTCCTGCATCCCTCTTCCGATCTTCCCATTTTCCACTTCTTCTCCGAACTTCAATCCTTCCCAATTTTCTCCTTTCATCATTCGCCATCGCTGCTTGGGGGATGGCTGGAAGATGGTGA Protein sequence MSRSHAETMRERKWSGSCPEAEERDGDFATFLRERERERETVIPYDHPHRPPPASLFRSSHFPLLLRTSILPNFLLSSFAIAAWGMAGRW
Homology
BLAST of Carg23405-RA vs. NCBI nr
Match: KAG7028249.1 (hypothetical protein SDJN02_09430, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 187.6 bits (475), Expect = 4.8e-44 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
Query: 1 MSRSHAETMRERKWSGSCPEAEERDGDFATFLRERERERETVIPYDHPHRPPPASLFRSS 60
MSRSHAETMRERKWSGSCPEAEERDGDFATFLRERERERETVIPYDHPHRPPPASLFRSS
Sbjct: 1 MSRSHAETMRERKWSGSCPEAEERDGDFATFLRERERERETVIPYDHPHRPPPASLFRSS 60
Query: 61 HFPLLLRTSILPNFLLSSFAIAAWGMAGRW 91
HFPLLLRTSILPNFLLSSFAIAAWGMAGRW
Sbjct: 61 HFPLLLRTSILPNFLLSSFAIAAWGMAGRW 90
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7028249.1 | 4.8e-44 | 100.00 | hypothetical protein SDJN02_09430, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..25 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Carg23405 | Carg23405 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg23405-RA:1 | Carg23405-RA:1 | exon |
| Carg23405-RA:2 | Carg23405-RA:2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg23405-RA:cds | Carg23405-RA:cds | CDS |
| Carg23405-RA:cds | Carg23405-RA:cds_2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Carg23405-RA | Carg23405-RA-protein | polypeptide |
|
