Carg23405 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg23405
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr06: 3160168 .. 3160914 (+)
RNA-Seq Expression	Carg23405
Synteny	Carg23405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCGCAGTCATGCCGAAACCATGAGAGAGAGAAAATGGAGTGGCTCATGCCCTGAGGCTGAGGAGCGAGACGGCGATTTCGCAACTTTTCTTCGAGAAAGAGAGAGAGAGAGAGAGACAGTGATTCCGTACGACCATCCTCATCGTCCTCCTCCTGCATCCCTCTTCCGATCTTCCCATTTTCCACTTCTTCTCCGAACTTCAATCCTTCCCAATTTTCTCCTTTCATCATTCGCCATCGCTGTTCTTCGATTCGCCTTGCTGCACTGATTATCCAATTAAGACTTCCTCTTCGTCGTTTGATCACCTTTGGAGCCTCCTTCAATTGGGTCTCGAATTCTTTTCCCCCAGTGGAGTTTGAAGTTTCGACTTTTGGTAAGTGAAGAGATTTGCCTTGTTCAATTTGGAATTTTGGGTGTTGTTCTGCCGTTTCTCGTTTTTTTTTTTAGGGTTTTTGGTTTTGTTCGTTGTTTGTTTAGCTTCATGCATGTAGGGAATGGAATAGTGTGCTTGTATTTCTTGAATTCTTCATGTTCTATGTTTGGTTTGCTTGCGAATTGGACAATTGAAATGGGATTGTGAATTGTGGGAACGAAAATTTTGCGGTTTTTAAATTTGAAGTAAGTTGTTGGTTGTGTTCATGGGGATTCATCGAGGAGCGTTTGTGGCAAAGTCAGTCGACAGTGTTTTAAGGATTAGGTTTCTTGTTGTTTGAAGGCTTGGGGGATGGCTGGAAGATGGTGA

mRNA sequence

ATGAGTCGCAGTCATGCCGAAACCATGAGAGAGAGAAAATGGAGTGGCTCATGCCCTGAGGCTGAGGAGCGAGACGGCGATTTCGCAACTTTTCTTCGAGAAAGAGAGAGAGAGAGAGAGACAGTGATTCCGTACGACCATCCTCATCGTCCTCCTCCTGCATCCCTCTTCCGATCTTCCCATTTTCCACTTCTTCTCCGAACTTCAATCCTTCCCAATTTTCTCCTTTCATCATTCGCCATCGCTGCTTGGGGGATGGCTGGAAGATGGTGA

Coding sequence (CDS)

ATGAGTCGCAGTCATGCCGAAACCATGAGAGAGAGAAAATGGAGTGGCTCATGCCCTGAGGCTGAGGAGCGAGACGGCGATTTCGCAACTTTTCTTCGAGAAAGAGAGAGAGAGAGAGAGACAGTGATTCCGTACGACCATCCTCATCGTCCTCCTCCTGCATCCCTCTTCCGATCTTCCCATTTTCCACTTCTTCTCCGAACTTCAATCCTTCCCAATTTTCTCCTTTCATCATTCGCCATCGCTGCTTGGGGGATGGCTGGAAGATGGTGA

Protein sequence

MSRSHAETMRERKWSGSCPEAEERDGDFATFLRERERERETVIPYDHPHRPPPASLFRSSHFPLLLRTSILPNFLLSSFAIAAWGMAGRW

Homology

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BLAST of Carg23405 vs. NCBI nr
Match: KAG7028249.1 (hypothetical protein SDJN02_09430, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.6 bits (475), Expect = 4.8e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSRSHAETMRERKWSGSCPEAEERDGDFATFLRERERERETVIPYDHPHRPPPASLFRSS 60
          MSRSHAETMRERKWSGSCPEAEERDGDFATFLRERERERETVIPYDHPHRPPPASLFRSS
Sbjct: 1  MSRSHAETMRERKWSGSCPEAEERDGDFATFLRERERERETVIPYDHPHRPPPASLFRSS 60

Query: 61 HFPLLLRTSILPNFLLSSFAIAAWGMAGRW 91
          HFPLLLRTSILPNFLLSSFAIAAWGMAGRW
Sbjct: 61 HFPLLLRTSILPNFLLSSFAIAAWGMAGRW 90

The following BLAST results are available for this feature:

BLAST of Carg23405 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028249.1	4.8e-44	100.00	hypothetical protein SDJN02_09430, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg23405 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23405 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg23405 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23405-RA	Carg23405-RA	mRNA