Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AAATTTATATTTGGGATAAAGGTGTGGAATTTGGATTTTATCAAATTCATATTTGGGATAAAGGTGTGGGATGTGGGTCGTGTTCTATCGAGGAATAAGAAGGCTCCATCGTCGCCTAATATTTCCGTAAGCATCGCATCGGTCTGGCTCATGATTCTCCTCGCCATTTGATGGCCTTATTGTTTTAAAGCCAACATCTAAATTGGGACTTATCCTGTTCAGGGTAGAGTGAAGCTTGAGTTTGAAGGCTTGAAGCGAAGCAAAACTCGAGTAATGTTGAGTTGAAACGTTTGAAGTTTCGACCTCTGAACTTGGAGAGCACGTCAAGATGGAGCAAGGATGAAGCCACGGGACATGGCGATCAGCCACAACAAGCCTCCAAGGGATATAAAGCTACAATGAAGTTTGAAGACGAAGCCTCTAAGCTTGACGATGGAGTGACAACGTAG mRNA sequence AAATTTATATTTGGGATAAAGGTGTGGAATTTGGATTTTATCAAATTCATATTTGGGATAAAGGTGTGGGATGTGGGTCGTGTTCTATCGAGGAATAAGAAGGCTCCATCGTCGCCTAATATTTCCGGTAGAGTGAAGCTTGAGTTTGAAGGCTTGAAGCGAAGCAAAACTCGATTTCGACCTCTGAACTTGGAGAGCACGTCAAGATGGAGCAAGGATGAAGCCACGGGACATGGCGATCAGCCACAACAAGCCTCCAAGGGATATAAAGCTACAATGAAGTTTGAAGACGAAGCCTCTAAGCTTGACGATGGAGTGACAACGTAG Coding sequence (CDS) AAATTTATATTTGGGATAAAGGTGTGGAATTTGGATTTTATCAAATTCATATTTGGGATAAAGGTGTGGGATGTGGGTCGTGTTCTATCGAGGAATAAGAAGGCTCCATCGTCGCCTAATATTTCCGGTAGAGTGAAGCTTGAGTTTGAAGGCTTGAAGCGAAGCAAAACTCGATTTCGACCTCTGAACTTGGAGAGCACGTCAAGATGGAGCAAGGATGAAGCCACGGGACATGGCGATCAGCCACAACAAGCCTCCAAGGGATATAAAGCTACAATGAAGTTTGAAGACGAAGCCTCTAAGCTTGACGATGGAGTGACAACGTAG Protein sequence KFIFGIKVWNLDFIKFIFGIKVWDVGRVLSRNKKAPSSPNISGRVKLEFEGLKRSKTRFRPLNLESTSRWSKDEATGHGDQPQQASKGYKATMKFEDEASKLDDGVTT
Homology
BLAST of Carg21600-RA vs. NCBI nr
Match: KAG7028373.1 (hypothetical protein SDJN02_09554, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 218.0 bits (554), Expect = 4.0e-53 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 Query: 1 KFIFGIKVWNLDFIKFIFGIKVWDVGRVLSRNKKAPSSPNISGRVKLEFEGLKRSKTRFR 60 KFIFGIKVWNLDFIKFIFGIKVWDVGRVLSRNKKAPSSPNISGRVKLEFEGLKRSKTRFR Sbjct: 1 KFIFGIKVWNLDFIKFIFGIKVWDVGRVLSRNKKAPSSPNISGRVKLEFEGLKRSKTRFR 60
Query: 61 PLNLESTSRWSKDEATGHGDQPQQASKGYKATMKFEDEASKLDDGVTT 109 PLNLESTSRWSKDEATGHGDQPQQASKGYKATMKFEDEASKLDDGVTT Sbjct: 61 PLNLESTSRWSKDEATGHGDQPQQASKGYKATMKFEDEASKLDDGVTT 108
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7028373.1 | 4.0e-53 | 100.00 | hypothetical protein SDJN02_09554, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 63..108 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 91..108 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
Carg21600 | Carg21600 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Carg21600-RA:1 | Carg21600-RA:1 | exon |
Carg21600-RA:2 | Carg21600-RA:2 | exon |
Carg21600-RA:3 | Carg21600-RA:3 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Carg21600-RA:cds | Carg21600-RA:cds | CDS |
Carg21600-RA:cds | Carg21600-RA:cds_2 | CDS |
Carg21600-RA:cds | Carg21600-RA:cds_3 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Carg21600-RA | Carg21600-RA-protein | polypeptide |
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