Carg21600 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21600
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr06: 4058460 .. 4058908 (+)
RNA-Seq Expression	Carg21600
Synteny	Carg21600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTATATTTGGGATAAAGGTGTGGAATTTGGATTTTATCAAATTCATATTTGGGATAAAGGTGTGGGATGTGGGTCGTGTTCTATCGAGGAATAAGAAGGCTCCATCGTCGCCTAATATTTCCGTAAGCATCGCATCGGTCTGGCTCATGATTCTCCTCGCCATTTGATGGCCTTATTGTTTTAAAGCCAACATCTAAATTGGGACTTATCCTGTTCAGGGTAGAGTGAAGCTTGAGTTTGAAGGCTTGAAGCGAAGCAAAACTCGAGTAATGTTGAGTTGAAACGTTTGAAGTTTCGACCTCTGAACTTGGAGAGCACGTCAAGATGGAGCAAGGATGAAGCCACGGGACATGGCGATCAGCCACAACAAGCCTCCAAGGGATATAAAGCTACAATGAAGTTTGAAGACGAAGCCTCTAAGCTTGACGATGGAGTGACAACGTAG

mRNA sequence

AAATTTATATTTGGGATAAAGGTGTGGAATTTGGATTTTATCAAATTCATATTTGGGATAAAGGTGTGGGATGTGGGTCGTGTTCTATCGAGGAATAAGAAGGCTCCATCGTCGCCTAATATTTCCGGTAGAGTGAAGCTTGAGTTTGAAGGCTTGAAGCGAAGCAAAACTCGATTTCGACCTCTGAACTTGGAGAGCACGTCAAGATGGAGCAAGGATGAAGCCACGGGACATGGCGATCAGCCACAACAAGCCTCCAAGGGATATAAAGCTACAATGAAGTTTGAAGACGAAGCCTCTAAGCTTGACGATGGAGTGACAACGTAG

Coding sequence (CDS)

AAATTTATATTTGGGATAAAGGTGTGGAATTTGGATTTTATCAAATTCATATTTGGGATAAAGGTGTGGGATGTGGGTCGTGTTCTATCGAGGAATAAGAAGGCTCCATCGTCGCCTAATATTTCCGGTAGAGTGAAGCTTGAGTTTGAAGGCTTGAAGCGAAGCAAAACTCGATTTCGACCTCTGAACTTGGAGAGCACGTCAAGATGGAGCAAGGATGAAGCCACGGGACATGGCGATCAGCCACAACAAGCCTCCAAGGGATATAAAGCTACAATGAAGTTTGAAGACGAAGCCTCTAAGCTTGACGATGGAGTGACAACGTAG

Protein sequence

KFIFGIKVWNLDFIKFIFGIKVWDVGRVLSRNKKAPSSPNISGRVKLEFEGLKRSKTRFRPLNLESTSRWSKDEATGHGDQPQQASKGYKATMKFEDEASKLDDGVTT

Homology

[Close]

BLAST of Carg21600 vs. NCBI nr
Match: KAG7028373.1 (hypothetical protein SDJN02_09554, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.0e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   KFIFGIKVWNLDFIKFIFGIKVWDVGRVLSRNKKAPSSPNISGRVKLEFEGLKRSKTRFR 60
           KFIFGIKVWNLDFIKFIFGIKVWDVGRVLSRNKKAPSSPNISGRVKLEFEGLKRSKTRFR
Sbjct: 1   KFIFGIKVWNLDFIKFIFGIKVWDVGRVLSRNKKAPSSPNISGRVKLEFEGLKRSKTRFR 60

Query: 61  PLNLESTSRWSKDEATGHGDQPQQASKGYKATMKFEDEASKLDDGVTT 109
           PLNLESTSRWSKDEATGHGDQPQQASKGYKATMKFEDEASKLDDGVTT
Sbjct: 61  PLNLESTSRWSKDEATGHGDQPQQASKGYKATMKFEDEASKLDDGVTT 108

The following BLAST results are available for this feature:

BLAST of Carg21600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028373.1	4.0e-53	100.00	hypothetical protein SDJN02_09554, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg21600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21600-RA	Carg21600-RA	mRNA