Carg21150-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg21150-RA
Type	mRNA
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Polyamine-modulated factor 1-binding protein
Location	Carg_Chr01: 10936882 .. 10937743 (+)
Sequence length	264
RNA-Seq Expression	Carg21150-RA
Synteny	Carg21150-RA

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTCCTTCGTTCATCTGGTTCCGGCATCTCTGCGATGGCGACTTCCGATTCAAAACCCGACGATCGGTCTATTTCGTCGCCGGAAACTGAGTTGTTGCCGGAATCTGAATCGCAGCTCTCAGTTCTGGTCTACGGTACGCTTCTTCGTTTTTCTTTCTCTCTCTATTTGTGGGTAATGTTAACAAACAAGCTGCTAGAAGGGAGAGAAAAGATTACCTACACGCGAACTTGATGATTCTGGTTTATTCATTACTAATAAATGAATTGATATCATCCTTTTATTGACAATGAAATTTTACAGTTTTCATATAAAGGATTTAAAAAGCATGCACTCATCGAAATATTACATGAAGTCGAGGGAATGCAAATTGTATGATGACATGTTTAGATTCTACTGCATGCTTTCAATAAATTCTATTAAGAACTTTGTGCCAGCGAAAGATGACTATTTTTACATGCGTAACCAATTTTTCATAATAGAGCGTTCTCCCAGTCGTCAAATTTAAATATATTCTAGTTTGGTGACATTATCTGTTCTTTGTCGCCCACCAATACCATTTATCTTCCCATTCCTCTTCTGCCCATTATTTTCTGAATCTTCTCTCGTAACGACACTCAACTTAATTGCATAACACTTAATAATAGTACGTCTACGTCCTAATGCTGCTTTAGTCTTCTCGTTATCAACTGTTTTCAGTGAAATTGATCGAAACACTGCTTGAATATTTGAAGACATGGAAAAGTGCAGGCGTTCTGCTCTCGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACTTGCTCAACAACGGAGGGGGAACGCTGTAA

mRNA sequence

ATGGAACTCCTTCGTTCATCTGGTTCCGGCATCTCTGCGATGGCGACTTCCGATTCAAAACCCGACGATCGGTCTATTTCGTCGCCGGAAACTGAGTTGTTGCCGGAATCTGAATCGCAGCTCTCAGTTCTGGTCTACGACATGGAAAAGTGCAGGCGTTCTGCTCTCGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACTTGCTCAACAACGGAGGGGGAACGCTGTAA

Coding sequence (CDS)

ATGGAACTCCTTCGTTCATCTGGTTCCGGCATCTCTGCGATGGCGACTTCCGATTCAAAACCCGACGATCGGTCTATTTCGTCGCCGGAAACTGAGTTGTTGCCGGAATCTGAATCGCAGCTCTCAGTTCTGGTCTACGACATGGAAAAGTGCAGGCGTTCTGCTCTCGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACTTGCTCAACAACGGAGGGGGAACGCTGTAA

Protein sequence

MELLRSSGSGISAMATSDSKPDDRSISSPETELLPESESQLSVLVYDMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGGTL

Homology

[Close]

BLAST of Carg21150-RA vs. NCBI nr
Match: KAG7037542.1 (hypothetical protein SDJN02_01170, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MELLRSSGSGISAMATSDSKPDDRSISSPETELLPESESQLSVLVYDMEKCRRSALDRKG 60
          MELLRSSGSGISAMATSDSKPDDRSISSPETELLPESESQLSVLVYDMEKCRRSALDRKG
Sbjct: 1  MELLRSSGSGISAMATSDSKPDDRSISSPETELLPESESQLSVLVYDMEKCRRSALDRKG 60

Query: 61 VLEEEKQQFQQAAYTVLDLLNNGGGTL 88
          VLEEEKQQFQQAAYTVLDLLNNGGGTL
Sbjct: 61 VLEEEKQQFQQAAYTVLDLLNNGGGTL 87

[Close]

BLAST of Carg21150-RA vs. NCBI nr
Match: XP_023524409.1 (uncharacterized protein LOC111788313 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 66/113 (58.41%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MELLRSSGSGISAMATSDSKPDDRSISSPETELLPESESQLSVLVYDMEKCRRSALDR-- 60
           MELLRSS SGISAMATS+SKPDDRSIS      LPESESQLSVLVYD+ +  + A++   
Sbjct: 2   MELLRSSCSGISAMATSESKPDDRSIS------LPESESQLSVLVYDISQQAQGAMENML 61

Query: 61  ------------------------KGVLEEEKQQFQQAAYTVLDLLNNGGGTL 88
                                     VLEEEKQQFQQAAYTVLD+LNNGGGTL
Sbjct: 62  RMISEIDRTLLEYLKTWKSAGVLLSRVLEEEKQQFQQAAYTVLDMLNNGGGTL 108

[Close]

BLAST of Carg21150-RA vs. NCBI nr
Match: XP_004136463.2 (uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetical protein Csa_001898 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 9.7e-18
Identity = 58/101 (57.43%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 14  MATSDSKPDDRSISSPETELLPESESQLSVLVY--------------------------- 73
           MATS+SKP+D+ I  PE+E LPESESQLS L++                           
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 74  --DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGG 86
             D+EKCR SALDRKGVLEEEKQQFQQAAYTVLD+LNNGGG
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]

BLAST of Carg21150-RA vs. NCBI nr
Match: XP_022937053.1 (uncharacterized protein LOC111443468 [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 4.8e-17
Identity = 60/105 (57.14%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 14  MATSDSKPDDRSISSPETELLP--ESESQLSVLVY------------------------- 73
           MA+S+SKP+D+ I  PE+E LP  ESESQLSVL++                         
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 74  ----DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGGTL 88
               D+EKCR SALDRKGVLEEEKQQFQQAAYTVLD+LNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of Carg21150-RA vs. NCBI nr
Match: XP_023535872.1 (uncharacterized protein LOC111797169 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 6.3e-17
Identity = 60/105 (57.14%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 14  MATSDSKPDDRSISSPETELLP--ESESQLSVLVY------------------------- 73
           MA+S+SKP+D  I  PE+E LP  ESESQLSVL++                         
Sbjct: 1   MASSESKPNDHLIPLPESESLPEAESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 74  ----DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGGTL 88
               D+EKCR SALDRKGVLEEEKQQFQQAAYTVLD+LNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of Carg21150-RA vs. ExPASy TrEMBL
Match: A0A0A0LJE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.7e-18
Identity = 58/101 (57.43%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 14  MATSDSKPDDRSISSPETELLPESESQLSVLVY--------------------------- 73
           MATS+SKP+D+ I  PE+E LPESESQLS L++                           
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 74  --DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGG 86
             D+EKCR SALDRKGVLEEEKQQFQQAAYTVLD+LNNGGG
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]

BLAST of Carg21150-RA vs. ExPASy TrEMBL
Match: A0A6J1FEZ1 (uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC111443468 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 60/105 (57.14%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 14  MATSDSKPDDRSISSPETELLP--ESESQLSVLVY------------------------- 73
           MA+S+SKP+D+ I  PE+E LP  ESESQLSVL++                         
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 74  ----DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGGTL 88
               D+EKCR SALDRKGVLEEEKQQFQQAAYTVLD+LNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of Carg21150-RA vs. ExPASy TrEMBL
Match: A0A5A7TBQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007070 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-17
Identity = 59/104 (56.73%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 14  MATSDSKPDDRSISSPETELLPESESQLSVLVY--------------------------- 73
           MATS+SKP+D+ I  PE E LPE ESQLS L++                           
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 74  --DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNN-GGGTL 88
             D+EKCR SALDRKGVLEEEKQQFQQAAYTVLD+LNN GGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]

BLAST of Carg21150-RA vs. ExPASy TrEMBL
Match: A0A1S3CR82 (uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-17
Identity = 59/104 (56.73%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 14  MATSDSKPDDRSISSPETELLPESESQLSVLVY--------------------------- 73
           MATS+SKP+D+ I  PE E LPE ESQLS L++                           
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 74  --DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNN-GGGTL 88
             D+EKCR SALDRKGVLEEEKQQFQQAAYTVLD+LNN GGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]

BLAST of Carg21150-RA vs. ExPASy TrEMBL
Match: A0A6J1IGC1 (uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 59/105 (56.19%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 14  MATSDSKPDDRSISSPETELLPESES--QLSVLVY------------------------- 73
           MA+S+SKP D+ I  PE+E L ESES  QLSVL++                         
Sbjct: 1   MASSESKPTDQLIPLPESESLSESESETQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 74  ----DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGGTL 88
               D+EKCR SALDRKGVLEEEKQQFQQAAYTVLD+LNNGGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of Carg21150-RA vs. TAIR 10
Match: AT5G25570.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 47 DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGG 86
          ++EK +  A+++K +LEEEK QFQ+AAYT+LD+L+N  G
Sbjct: 61 EIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]

BLAST of Carg21150-RA vs. TAIR 10
Match: AT5G25570.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 47 DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGG 86
          ++EK +  A+++K +LEEEK QFQ+AAYT+LD+L+N  G
Sbjct: 61 EIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]

BLAST of Carg21150-RA vs. TAIR 10
Match: AT5G25570.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 47  DMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGG 86
           ++EK +  A+++K +LEEEK QFQ+AAYT+LD+L+N  G
Sbjct: 93  EIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 131

The following BLAST results are available for this feature:

BLAST of Carg21150-RA vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037542.1	4.2e-37	100.00	hypothetical protein SDJN02_01170, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023524409.1	1.5e-18	58.41	uncharacterized protein LOC111788313 [Cucurbita pepo subsp. pepo]	[more]
XP_004136463.2	9.7e-18	57.43	uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetica...	[more]
XP_022937053.1	4.8e-17	57.14	uncharacterized protein LOC111443468 [Cucurbita moschata]	[more]
XP_023535872.1	6.3e-17	57.14	uncharacterized protein LOC111797169 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg21150-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg21150-RA vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJE0	4.7e-18	57.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1	[more]
A0A6J1FEZ1	2.3e-17	57.14	uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]
A0A5A7TBQ0	6.8e-17	56.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CR82	6.8e-17	56.73	uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=...	[more]
A0A6J1IGC1	3.4e-16	56.19	uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676...	[more]

BLAST of Carg21150-RA vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25570.1	1.8e-06	53.85	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G25570.2	1.8e-06	53.85	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT5G25570.3	1.8e-06	53.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR36800	POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN	coord: 47..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg21150	Carg21150	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21150-RA:1	Carg21150-RA:1	exon
Carg21150-RA:2	Carg21150-RA:2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21150-RA:cds	Carg21150-RA:cds	CDS
Carg21150-RA:cds	Carg21150-RA:cds_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg21150-RA	Carg21150-RA-protein	polypeptide