Carg21150 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg21150
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPolyamine-modulated factor 1-binding protein
LocationCarg_Chr01: 10936882 .. 10937743 (+)
RNA-Seq ExpressionCarg21150
SyntenyCarg21150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTCCTTCGTTCATCTGGTTCCGGCATCTCTGCGATGGCGACTTCCGATTCAAAACCCGACGATCGGTCTATTTCGTCGCCGGAAACTGAGTTGTTGCCGGAATCTGAATCGCAGCTCTCAGTTCTGGTCTACGGTACGCTTCTTCGTTTTTCTTTCTCTCTCTATTTGTGGGTAATGTTAACAAACAAGCTGCTAGAAGGGAGAGAAAAGATTACCTACACGCGAACTTGATGATTCTGGTTTATTCATTACTAATAAATGAATTGATATCATCCTTTTATTGACAATGAAATTTTACAGTTTTCATATAAAGGATTTAAAAAGCATGCACTCATCGAAATATTACATGAAGTCGAGGGAATGCAAATTGTATGATGACATGTTTAGATTCTACTGCATGCTTTCAATAAATTCTATTAAGAACTTTGTGCCAGCGAAAGATGACTATTTTTACATGCGTAACCAATTTTTCATAATAGAGCGTTCTCCCAGTCGTCAAATTTAAATATATTCTAGTTTGGTGACATTATCTGTTCTTTGTCGCCCACCAATACCATTTATCTTCCCATTCCTCTTCTGCCCATTATTTTCTGAATCTTCTCTCGTAACGACACTCAACTTAATTGCATAACACTTAATAATAGTACGTCTACGTCCTAATGCTGCTTTAGTCTTCTCGTTATCAACTGTTTTCAGTGAAATTGATCGAAACACTGCTTGAATATTTGAAGACATGGAAAAGTGCAGGCGTTCTGCTCTCGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACTTGCTCAACAACGGAGGGGGAACGCTGTAA

mRNA sequence

ATGGAACTCCTTCGTTCATCTGGTTCCGGCATCTCTGCGATGGCGACTTCCGATTCAAAACCCGACGATCGGTCTATTTCGTCGCCGGAAACTGAGTTGTTGCCGGAATCTGAATCGCAGCTCTCAGTTCTGGTCTACGACATGGAAAAGTGCAGGCGTTCTGCTCTCGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACTTGCTCAACAACGGAGGGGGAACGCTGTAA

Coding sequence (CDS)

ATGGAACTCCTTCGTTCATCTGGTTCCGGCATCTCTGCGATGGCGACTTCCGATTCAAAACCCGACGATCGGTCTATTTCGTCGCCGGAAACTGAGTTGTTGCCGGAATCTGAATCGCAGCTCTCAGTTCTGGTCTACGACATGGAAAAGTGCAGGCGTTCTGCTCTCGACAGGAAGGGAGTCCTAGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACTTGCTCAACAACGGAGGGGGAACGCTGTAA

Protein sequence

MELLRSSGSGISAMATSDSKPDDRSISSPETELLPESESQLSVLVYDMEKCRRSALDRKGVLEEEKQQFQQAAYTVLDLLNNGGGTL
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7037542.14.2e-37100.00hypothetical protein SDJN02_01170, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023524409.11.5e-1858.41uncharacterized protein LOC111788313 [Cucurbita pepo subsp. pepo][more]
XP_004136463.29.7e-1857.43uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetica... [more]
XP_022937053.14.8e-1757.14uncharacterized protein LOC111443468 [Cucurbita moschata][more]
XP_023535872.16.3e-1757.14uncharacterized protein LOC111797169 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJE04.7e-1857.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1[more]
A0A6J1FEZ12.3e-1757.14uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC1114434... [more]
A0A5A7TBQ06.8e-1756.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CR826.8e-1756.73uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=... [more]
A0A6J1IGC13.4e-1656.19uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676... [more]
Match NameE-valueIdentityDescription
AT5G25570.11.8e-0653.85unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT5G25570.21.8e-0653.85unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
AT5G25570.31.8e-0653.85unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availablePANTHERPTHR36800POLYAMINE-MODULATED FACTOR 1-BINDING PROTEINcoord: 47..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21150-RACarg21150-RAmRNA